Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006688

Physical Location & Seq

Genomic Coordinates Forward (+)

59580648 .. 59581772

Gene Structure 1125 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014931

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

ATGATTTATTGTGAAATTGAATCTGGTGTGAGGGCTCTCATACCTCCTGTCCCTGTGCAAGAGCAGCGGGTGAAGGAACCAAAACCAACTAAAGTGCATTTGAAGAAGTTCCCCTCTGGTCGAGTTTTATGCTTCAGGTCTGAACGTACTCTGCAAGAAGCGTTATCAGCAGAACACACTACTTTGCTTCCATTAGCTGATGCACTTTCAGCGGGGGAACGGTTTAAGGATCTTATTGCTGCTGGTGATCCATCATTGGGTGCTTTGACAATGATGGCTTTGAAGAAGGTGGTCTTTTTCTGGCAGCACCACTACTCAACCAAGTTTCAAATTTCCGATTTTGATTGCCGCCTACATCTGCAAGTGCATGAACACCAGGCAGATGACGGTTGCTGCTTTTATTGTGGCTGCCAGAGATCGATGTCAGTGATTCTAGCCGTCGAGAATTCATTAAGTTTGGATGACGTCCTCAAACTCTCAAAGATTGGGATCTCGGAGTGGGCAGCCTCAAGAAGAGGTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

175

Amino Acids

19.5

Weight (kDa)

7.03

Isoelectric Point (pI)

40.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20810
fragaria_vesca	FvH4_6g44800
malus_domestica	MD09G1093100.v1.1 MD17G1083200.v1.1
prunus_persica	Prupe.3G232100_v2.0.a1
pyrus_communis	pycom09g01830 pycom17g08100
rosa_chinensis	RchiOBHm_Chr2g0161971 RchiOBHm_Chr6g0254251
rosa_laevigata	RLG00000014931 RLG00000021312
rosa_multiflora	Rmu_sc0003711.1_g000023 Rmu_sc0008428.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088430 Rroxscaffold_7G00211000 Rroxscaffold_7G00211020
rosa_rugosa	Rorug02G0493700
rosa_samantha	Rh2AG559600 Rh2BG573000 Rh2CG543100 Rh2DG582800 Rh6AG067500 Rh6BG060600 Rh6DG057600
rosa_wichuraiana	Rw2G046310 Rw6G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	468
AciI	CCGC	3 cut(s)	67, 212, 349
AclWI	GGATC	3 cut(s)	237, 242, 497
AcsI	RAATTY	2 cut(s)	330, 445
AcuI	CTGAAG	1 cut(s)	118
AcyI	GRCGYC	1 cut(s)	465
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	257
AgsI	TTSAA	4 cut(s)	20, 103, 283, 329
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	1 cut(s)	197
AluI	AGCT	1 cut(s)	197
AlwI	GGATC	3 cut(s)	237, 242, 497
ApeKI	GCWGC	6 cut(s)	64, 239, 304, 393, 408, 503
ApoI	RAATTY	2 cut(s)	330, 445
Asp700I	GAANNNNTTC	1 cut(s)	107
AsuHPI	GGTGA	2 cut(s)	82, 257
BanII	GRGCYC	1 cut(s)	37
BbvI	GCAGC	6 cut(s)	76, 226, 316, 380, 395, 515
BccI	CCATC	2 cut(s)	259, 268
BceAI	ACGGC	1 cut(s)	422
BcgI	CGANNNNNNTGC	2 cut(s)	111, 145
BciT130I	CCWGG	1 cut(s)	377
BfaI	CTAG	1 cut(s)	434
BisI	GCNGC	7 cut(s)	65, 240, 305, 349, 394, 409, 504
BlsI	GCNGC	7 cut(s)	66, 241, 306, 350, 395, 410, 505
Bme1390I	CCNGG	1 cut(s)	377
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	190
BpuEI	CTTGAG	1 cut(s)	493
Bsa29I	ATCGAT	1 cut(s)	419
BsaBI	GATNNNNATC	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	465
Bsc4I	CCNNNNNNNGG	1 cut(s)	257
Bse8I	GATNNNNATC	1 cut(s)	488
BseBI	CCWGG	1 cut(s)	377
BseCI	ATCGAT	1 cut(s)	419
BseGI	GGATG	1 cut(s)	466
BseJI	GATNNNNATC	1 cut(s)	488
BseLI	CCNNNNNNNGG	1 cut(s)	257
BseXI	GCAGC	6 cut(s)	76, 226, 316, 380, 395, 515
BshVI	ATCGAT	1 cut(s)	419
BslFI	GGGAC	1 cut(s)	35
BslI	CCNNNNNNNGG	1 cut(s)	257
BsmFI	GGGAC	1 cut(s)	35
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	4 cut(s)	229, 247, 416, 489
BspACI	CCGC	3 cut(s)	67, 212, 349
BspDI	ATCGAT	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	78
BspPI	GGATC	3 cut(s)	237, 242, 497
BssMI	GATC	4 cut(s)	229, 247, 416, 489
BssNI	GRCGYC	1 cut(s)	465
Bst2UI	CCWGG	1 cut(s)	377
Bst4CI	ACNGT	2 cut(s)	222, 389
Bst6I	CTCTTC	1 cut(s)	508
BstACI	GRCGYC	1 cut(s)	465
BstF5I	GGATG	1 cut(s)	466
BstKTI	GATC	4 cut(s)	232, 250, 419, 492
BstMBI	GATC	4 cut(s)	229, 247, 416, 489
BstMWI	GCNNNNNNNGC	3 cut(s)	64, 167, 209
BstNI	CCWGG	1 cut(s)	377
BstSCI	CCNGG	1 cut(s)	375
BstV1I	GCAGC	6 cut(s)	76, 226, 316, 380, 395, 515
BstX2I	RGATCY	2 cut(s)	229, 489
BstYI	RGATCY	2 cut(s)	229, 489
Bsu15I	ATCGAT	1 cut(s)	419
BsuTUI	ATCGAT	1 cut(s)	419
BtsCI	GGATG	1 cut(s)	466
BtsIMutI	CAGTG	1 cut(s)	432
ClaI	ATCGAT	1 cut(s)	419
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	1 cut(s)	368
CviJI	RGCY	6 cut(s)	35, 197, 278, 408, 437, 506
CviKI_1	RGCY	6 cut(s)	35, 197, 278, 408, 437, 506
CviQI	GTAC	1 cut(s)	147
DpnI	GATC	4 cut(s)	231, 249, 418, 491
DpnII	GATC	4 cut(s)	229, 247, 416, 489
Eam1104I	CTCTTC	1 cut(s)	508
EarI	CTCTTC	1 cut(s)	508
Eco24I	GRGCYC	1 cut(s)	37
Eco57I	CTGAAG	1 cut(s)	118
EcoRI	GAATTC	1 cut(s)	445
EcoRII	CCWGG	1 cut(s)	375
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	1 cut(s)	371
FaiI	YATR	3 cut(s)	41, 130, 369
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	35
FatI	CATG	1 cut(s)	367
FauI	CCCGC	2 cut(s)	60, 205
Fnu4HI	GCNGC	7 cut(s)	65, 240, 305, 349, 394, 409, 504
FokI	GGATG	1 cut(s)	473
FriOI	GRGCYC	1 cut(s)	37
Fsp4HI	GCNGC	7 cut(s)	65, 240, 305, 349, 394, 409, 504
FspBI	CTAG	1 cut(s)	434
GluI	GCNGC	7 cut(s)	65, 240, 305, 349, 394, 409, 504
Hin1I	GRCGYC	1 cut(s)	465
Hin1II	CATG	1 cut(s)	371
HinfI	GANTC	2 cut(s)	20, 430
HphI	GGTGA	2 cut(s)	82, 257
Hpy188I	TCNGA	3 cut(s)	142, 337, 496
Hpy188III	TCNNGA	2 cut(s)	442, 510
Hpy99I	CGWCG	1 cut(s)	443
HpyAV	CCTTC	2 cut(s)	67, 280
HpyCH4III	ACNGT	2 cut(s)	222, 389
HpyCH4IV	ACGT	2 cut(s)	145, 465
HpyCH4V	TGCA	6 cut(s)	58, 97, 154, 203, 361, 367
HpyF10VI	GCNNNNNNNGC	3 cut(s)	64, 167, 209
HpySE526I	ACGT	2 cut(s)	145, 465
Hsp92I	GRCGYC	1 cut(s)	465
Hsp92II	CATG	1 cut(s)	371
Kzo9I	GATC	4 cut(s)	229, 247, 416, 489
Lsp1109I	GCAGC	6 cut(s)	76, 226, 316, 380, 395, 515
LweI	GCATC	1 cut(s)	190
MaeI	CTAG	1 cut(s)	434
MaeII	ACGT	2 cut(s)	145, 465
MalI	GATC	4 cut(s)	231, 249, 418, 491
MboI	GATC	4 cut(s)	229, 247, 416, 489
MboII	GAAGA	3 cut(s)	115, 295, 525
MflI	RGATCY	2 cut(s)	229, 489
MhlI	GDGCHC	1 cut(s)	37
MluCI	AATT	3 cut(s)	15, 330, 445
MnlI	CCTC	6 cut(s)	24, 54, 124, 479, 509, 517
MroXI	GAANNNNTTC	1 cut(s)	107
MseI	TTAA	2 cut(s)	225, 452
MspA1I	CMGCKG	2 cut(s)	67, 212
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MwoI	GCNNNNNNNGC	3 cut(s)	64, 167, 209
NdeII	GATC	4 cut(s)	229, 247, 416, 489
NlaIII	CATG	1 cut(s)	371
NlaIV	GGNNCC	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	107
PfeI	GAWTC	2 cut(s)	20, 430
PkrI	GCNGC	7 cut(s)	66, 241, 306, 350, 395, 410, 505
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	1 cut(s)	78
PsuI	RGATCY	2 cut(s)	229, 489
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SaqAI	TTAA	2 cut(s)	225, 452
SatI	GCNGC	7 cut(s)	65, 240, 305, 349, 394, 409, 504
Sau3AI	GATC	4 cut(s)	229, 247, 416, 489
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	7 cut(s)	46, 140, 148, 199, 291, 468, 520
SfaNI	GCATC	1 cut(s)	190
SmlI	CTYRAG	1 cut(s)	508
SmoI	CTYRAG	1 cut(s)	508
Sse9I	AATT	3 cut(s)	15, 330, 445
SsiI	CCGC	3 cut(s)	67, 212, 349
SspMI	CTAG	1 cut(s)	434
StyD4I	CCNGG	1 cut(s)	375
TaaI	ACNGT	2 cut(s)	222, 389
TaiI	ACGT	2 cut(s)	148, 468
TaqI	TCGA	3 cut(s)	121, 419, 441
TasI	AATT	3 cut(s)	15, 330, 445
TauI	GCSGC	1 cut(s)	351
TfiI	GAWTC	2 cut(s)	20, 430
Tru1I	TTAA	2 cut(s)	225, 452
Tru9I	TTAA	2 cut(s)	225, 452
TscAI	CASTG	1 cut(s)	432
TseI	GCWGC	6 cut(s)	64, 239, 304, 393, 408, 503
TspDTI	ATGAA	2 cut(s)	384, 438
TspRI	CASTG	1 cut(s)	432
XapI	RAATTY	2 cut(s)	330, 445
XmnI	GAANNNNTTC	1 cut(s)	107
XspI	CTAG	1 cut(s)	434
ZraI	GACGTC	1 cut(s)	466

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.