Rroxscaffold_7G00211020

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006688
Physical Location & Seq
Forward (+)
61438938 .. 61441435
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00211020.1

Sequence Viewer

Length: 720 bp
ATGGTGTACAGGTCTCAAAACGACTCCAATAAGGCTGAAATTTGGAGGAACCCACCAAGAACTGCATGTCGTGACACGAAGCTGCACAATGGTCTTGAGGGTAATTTAGCGGAGCATCGACAATTGGAGGCTCACATACATCCTGTCATTGTGCAAGAGCAGCGGATGAAGGAACCAAAACCAATTAAAGTGCATTTGAAGAAGTTCCCCTCTCGTCGAGTTTTATGCTTCAGTCTGAATCTTCCATTAGTTGATGCACTTTCAGCAGGGGAACGGTTTAAGGATCTTATTGCTGCTGGTGATCCATCATTGGGTGCTTTGACAATGATGGCTTTGAAGAAGGTGGTCTTTTTCTGGCAGCACTACTACTCAACCAAGCTTCCACTAGCTGATGCACTTGTGGTAGGGGAACGGTTGAAGGATCTTATTACTGTTGGTGATCCATTATTGGGTGCTTTGACAATGATGGCTTTGAAAAAGGTGGTCTTTTTCTGGCAGCATCATTACTCAACCAAGTTTCAAATTTTTGATTTGGATCATAGCCCGCTAGCTGATTACATTTGCAAGTGCATGAATATCTTGCAAATGATGGTTGCTGGTGCTATTGTGGCTGCTAGGAATCGGTGTCAATTTGCTAATCCAATGGATCCTAATCTAGCAGATTATGCACCAGTTTTGGGTTCTCTGTTGTGGGTCATCTTTGGGCTATTCGGCTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

27.05

Weight (kDa)

9.12

Isoelectric Point (pI)

35.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 110, 163, 545
AclWI GGATC 7 cut(s) 291, 296, 429, 434, 543, 641, 654
AcsI RAATTY 2 cut(s) 39, 522
AcuI CTGAAG 1 cut(s) 214
AfaI GTAC 1 cut(s) 8
AfiI CCNNNNNNNGG 3 cut(s) 311, 449, 677
AgsI TTSAA 5 cut(s) 199, 337, 418, 475, 521
AluBI AGCT 4 cut(s) 82, 379, 389, 551
AluI AGCT 4 cut(s) 82, 379, 389, 551
Alw26I GTCTC 1 cut(s) 18
AlwI GGATC 7 cut(s) 291, 296, 429, 434, 543, 641, 654
ApeKI GCWGC 6 cut(s) 82, 160, 293, 358, 496, 611
ApoI RAATTY 2 cut(s) 39, 522
Asp700I GAANNNNTTC 1 cut(s) 203
AsuHPI GGTGA 2 cut(s) 311, 449
AsuNHI GCTAGC 1 cut(s) 547
BamHI GGATCC 1 cut(s) 646
BbvI GCAGC 6 cut(s) 69, 172, 280, 370, 508, 598
BccI CCATC 4 cut(s) 313, 322, 460, 583
BcgI CGANNNNNNTGC 2 cut(s) 207, 241
BcoDI GTCTC 1 cut(s) 18
BfaI CTAG 4 cut(s) 386, 548, 615, 656
BisI GCNGC 6 cut(s) 83, 161, 294, 359, 497, 612
BlsI GCNGC 6 cut(s) 84, 162, 295, 360, 498, 613
BmiI GGNNCC 3 cut(s) 50, 174, 648
BmsI GCATC 4 cut(s) 124, 244, 382, 508
BmtI GCTAGC 1 cut(s) 551
BpuEI CTTGAG 1 cut(s) 116
BsaBI GATNNNNATC 2 cut(s) 534, 651
BsaI GGTCTC 1 cut(s) 18
Bsc4I CCNNNNNNNGG 3 cut(s) 311, 449, 677
Bse1I ACTGG 1 cut(s) 671
Bse8I GATNNNNATC 2 cut(s) 534, 651
BseGI GGATG 2 cut(s) 139, 171
BseJI GATNNNNATC 2 cut(s) 534, 651
BseLI CCNNNNNNNGG 3 cut(s) 311, 449, 677
BseNI ACTGG 1 cut(s) 671
BseXI GCAGC 6 cut(s) 69, 172, 280, 370, 508, 598
BsgI GTGCAG 1 cut(s) 68
BslI CCNNNNNNNGG 3 cut(s) 311, 449, 677
BsmAI GTCTC 1 cut(s) 18
Bso31I GGTCTC 1 cut(s) 18
Bsp1407I TGTACA 1 cut(s) 6
Bsp143I GATC 6 cut(s) 283, 301, 421, 439, 535, 646
BspACI CCGC 3 cut(s) 110, 163, 545
BspLI GGNNCC 3 cut(s) 50, 174, 648
BspOI GCTAGC 1 cut(s) 551
BspPI GGATC 7 cut(s) 291, 296, 429, 434, 543, 641, 654
BspTNI GGTCTC 1 cut(s) 18
BsrGI TGTACA 1 cut(s) 6
BsrI ACTGG 1 cut(s) 671
BssMI GATC 6 cut(s) 283, 301, 421, 439, 535, 646
Bst4CI ACNGT 3 cut(s) 276, 414, 433
BstAPI GCANNNNNTGC 1 cut(s) 665
BstAUI TGTACA 1 cut(s) 6
BstC8I GCNNGC 2 cut(s) 545, 549
BstF5I GGATG 2 cut(s) 139, 171
BstKTI GATC 6 cut(s) 286, 304, 424, 442, 538, 649
BstMAI GTCTC 1 cut(s) 18
BstMBI GATC 6 cut(s) 283, 301, 421, 439, 535, 646
BstMWI GCNNNNNNNGC 4 cut(s) 160, 263, 608, 665
BstNSI RCATGY 1 cut(s) 69
BstV1I GCAGC 6 cut(s) 69, 172, 280, 370, 508, 598
BstX2I RGATCY 3 cut(s) 283, 421, 646
BstYI RGATCY 3 cut(s) 283, 421, 646
BtsCI GGATG 2 cut(s) 139, 171
Cac8I GCNNGC 2 cut(s) 545, 549
Csp6I GTAC 1 cut(s) 7
CviAII CATG 2 cut(s) 66, 571
CviQI GTAC 1 cut(s) 7
DpnI GATC 6 cut(s) 285, 303, 423, 441, 537, 648
DpnII GATC 6 cut(s) 283, 301, 421, 439, 535, 646
Eco31I GGTCTC 1 cut(s) 18
Eco57I CTGAAG 1 cut(s) 214
FaeI CATG 2 cut(s) 69, 574
FaiI YATR 6 cut(s) 67, 137, 226, 540, 572, 666
FalI AAGNNNNNCTT 4 cut(s) 332, 364, 470, 502
FatI CATG 2 cut(s) 65, 570
FauI CCCGC 1 cut(s) 552
Fnu4HI GCNGC 6 cut(s) 83, 161, 294, 359, 497, 612
FokI GGATG 2 cut(s) 126, 178
Fsp4HI GCNGC 6 cut(s) 83, 161, 294, 359, 497, 612
FspBI CTAG 4 cut(s) 386, 548, 615, 656
GluI GCNGC 6 cut(s) 83, 161, 294, 359, 497, 612
Hin1II CATG 2 cut(s) 69, 574
HindIII AAGCTT 1 cut(s) 377
HinfI GANTC 3 cut(s) 23, 238, 619
HphI GGTGA 2 cut(s) 311, 449
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 71, 95
Hpy8I GTNNAC 1 cut(s) 7
Hpy99I CGWCG 1 cut(s) 219
HpyAV CCTTC 3 cut(s) 163, 334, 412
HpyCH4III ACNGT 3 cut(s) 276, 414, 433
HpyF10VI GCNNNNNNNGC 4 cut(s) 160, 263, 608, 665
Hsp92II CATG 2 cut(s) 69, 574
Kzo9I GATC 6 cut(s) 283, 301, 421, 439, 535, 646
LmnI GCTCC 1 cut(s) 112
LpnPI CCDG 7 cut(s) 156, 252, 282, 340, 478, 582, 684
Lsp1109I GCAGC 6 cut(s) 69, 172, 280, 370, 508, 598
LweI GCATC 4 cut(s) 124, 244, 382, 508
MaeI CTAG 4 cut(s) 386, 548, 615, 656
MaeIII GTNAC 1 cut(s) 71
MalI GATC 6 cut(s) 285, 303, 423, 441, 537, 648
MboI GATC 6 cut(s) 283, 301, 421, 439, 535, 646
MboII GAAGA 3 cut(s) 211, 233, 349
MfeI CAATTG 1 cut(s) 122
MflI RGATCY 3 cut(s) 283, 421, 646
MluCI AATT 6 cut(s) 39, 103, 122, 183, 522, 629
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 4 cut(s) 39, 91, 121, 220
MroXI GAANNNNTTC 1 cut(s) 203
MseI TTAA 2 cut(s) 186, 279
MspA1I CMGCKG 1 cut(s) 163
MunI CAATTG 1 cut(s) 122
MwoI GCNNNNNNNGC 4 cut(s) 160, 263, 608, 665
NdeII GATC 6 cut(s) 283, 301, 421, 439, 535, 646
NheI GCTAGC 1 cut(s) 547
NlaIII CATG 2 cut(s) 69, 574
NlaIV GGNNCC 3 cut(s) 50, 174, 648
NmuCI GTSAC 1 cut(s) 71
NspI RCATGY 1 cut(s) 69
PdmI GAANNNNTTC 1 cut(s) 203
PfeI GAWTC 2 cut(s) 238, 619
PkrI GCNGC 6 cut(s) 84, 162, 295, 360, 498, 613
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PspN4I GGNNCC 3 cut(s) 50, 174, 648
PsuI RGATCY 3 cut(s) 283, 421, 646
RsaI GTAC 1 cut(s) 8
RsaNI GTAC 1 cut(s) 7
SaqAI TTAA 2 cut(s) 186, 279
SatI GCNGC 6 cut(s) 83, 161, 294, 359, 497, 612
Sau3AI GATC 6 cut(s) 283, 301, 421, 439, 535, 646
SchI GAGTC 1 cut(s) 17
SetI ASST 7 cut(s) 14, 84, 345, 381, 391, 483, 553
SfaNI GCATC 4 cut(s) 124, 244, 382, 508
SmlI CTYRAG 1 cut(s) 95
SmoI CTYRAG 1 cut(s) 95
Sse9I AATT 6 cut(s) 39, 103, 122, 183, 522, 629
SsiI CCGC 3 cut(s) 110, 163, 545
SspMI CTAG 4 cut(s) 386, 548, 615, 656
TaaI ACNGT 3 cut(s) 276, 414, 433
TaqI TCGA 2 cut(s) 118, 217
TasI AATT 6 cut(s) 39, 103, 122, 183, 522, 629
TatI WGTACW 1 cut(s) 6
TfiI GAWTC 2 cut(s) 238, 619
Tru1I TTAA 2 cut(s) 186, 279
Tru9I TTAA 2 cut(s) 186, 279
TseFI GTSAC 1 cut(s) 71
TseI GCWGC 6 cut(s) 82, 160, 293, 358, 496, 611
Tsp45I GTSAC 1 cut(s) 71
TspDTI ATGAA 2 cut(s) 182, 587
XapI RAATTY 2 cut(s) 39, 522
XceI RCATGY 1 cut(s) 69
XmnI GAANNNNTTC 1 cut(s) 203
XspI CTAG 4 cut(s) 386, 548, 615, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.