RchiOBHm_Chr2g0161971

Belongs to the glycosyltransferase 8 family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
Physical Location & Seq
Forward (+)
77791283 .. 77794275
2993 bp
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UTR
Exon/CDS
Intron
PRQ53029

Sequence Viewer

Length: 1596 bp
ATGAGGCGGAGAGCGGCGGACTTCCGGCGGCCATTGAGGCCCAGAAGGTTTCCCAATGCGTTTTGGTGGGTTCTGTGTGGGGTTGCAGTGTTGCTGTTTATCTATACTTTGAGCAGAGGCACTCAGATTGAATCCAGACCTGTAATAGCCACAAGATATAGGCATGATAGAGTTATGGAAGGCCTGAACATTACTGAAGAAATGTTGAGCCCCAACTCAGTCACCAGGCAGATCAGTGACCAAATAGCTCTGGCAAAAGCTTTCGTTGTGATTGCCAAAGAGAGCAACAACCTTCAGTTTGCGTGGGAATTAAGTGCCCAGATCCGCAACTCACAGATTCTGCTGTCAAATGCTGCGACAAGGAGACCTTTGACAGCCAGAGAATCAGAAACTGCAATCCGTGATATGGCACTTGTACTGTACCAAGCACAGCTGCTCCATTACGATAGTGCAACCATGATTATGAGACTTAAAGCCAAAATACAATCTCTGGAAGAACAGATGAGTTCTGTGAGTGAGAAAAGTTCCAAGTATGGACAGATAGCTGCCGAGGAAGTCCCGAAAAGTCTTTACTGCCTTGGTATTCAGCTGACTAGTGAATGGTTCAGACACCCAAATCTACAGAGGAAACTCAAGGACAGAAAAATAGACATGAAAGTAAAGGATAACAATCTCTATCATTTCTGTGTATTCTCTGACAACATCCTGGCAACTTCAGTTGTGGTCAATTCAACAGCGTTAAGTTCCAACAATCCAGATAAGGTCGTCTTCCATCTTGTAACCGATGAAATCAACTATGCTGCAATGAAGGCCTGGTTTTCTATGAACAGCTTCAGAGGAGTGACTGTCGAGGTTCAAAAGTTTGAGGACTTCAAATGGCTGAATGCTTCTTATGTTCCTGTGCTTAAGCAGCTCCAAGACTCTGAAACTCAAAGTTACTATTTTTCTGGAAACAGTGATGATGGCCGGACACCAATCAAGTTTCGGAACCCAAAGTATCTTTCTATGCTTAACCATCTACGGTTTTATATTCCAGAAGTCTTTCCTGCCCTGAAGAAGGTGGTATTCCTTGATGATGATGTTGTTGTCCAGAAGGATCTGTCTGGTCTGTTCTCGATTGATTTGAATGGTAATGTAAATGGAGCAGTCGAGACATGCATGGAGACGTTTCACAGATACCATAAATATCTGAACTACTCTCACCCTCTCATACGATCACATTTTGATCCCGATGCCTGTGGATGGGCATTTGGAATGAATGTGTTTGATTTGGTTCAGTGGAGGAATAGGAATGTTACTGGCATCTACCATTACTGGCAGGAAAGAAATGTTGATCGGACGTTGTGGAAACTTGGCACATTGCCACCTGGATTGTTGACGTTCTATGGACTGACTGAGCCTTTGGAGCCCTCATGGCATGTTTTGGGTTTAGGCTACACAACTGTTGATCCTCATTTGATAGAGAAGGGTGCTGTGCTGCACTACAATGGAAACTCAAAACCGTGGTTGAAGATTGGGATGGAAAAGTACAAGCCCCTTTGGGAGAAATTTATTGATTATACTCATCCTTTGTTGCAACGATGCAATTTCCATTGA

Protein Analysis

531

Amino Acids

61.62

Weight (kDa)

9.14

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GAUT_1 PF25557 72 - 145 2.4e-09 Galacturonosyltransferase domain 1
Glyco_transf_8 PF01501 233 - 505 3.1e-69 Glycosyl transferase family 8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 14
AciI CCGC 5 cut(s) 7, 14, 17, 28, 325
AclWI GGATC 4 cut(s) 316, 1104, 1220, 1442
AcoI YGGCCR 2 cut(s) 29, 964
AcsI RAATTY 1 cut(s) 1547
AcuI CTGAAG 5 cut(s) 216, 278, 699, 817, 1073
AfaI GTAC 3 cut(s) 417, 422, 1529
AfiI CCNNNNNNNGG 3 cut(s) 406, 1057, 1242
AflII CTTAAG 1 cut(s) 905
AgsI TTSAA 6 cut(s) 131, 732, 857, 874, 1126, 1510
AhlI ACTAGT 1 cut(s) 593
AjnI CCWGG 4 cut(s) 224, 705, 812, 1366
AjuI GAANNNNNNNTTGG 2 cut(s) 985, 1017
AluBI AGCT 7 cut(s) 248, 260, 433, 545, 589, 831, 913
AluI AGCT 7 cut(s) 248, 260, 433, 545, 589, 831, 913
Alw26I GTCTC 4 cut(s) 358, 460, 1145, 1157
AlwI GGATC 4 cut(s) 316, 1104, 1220, 1442
AlwNI CAGNNNCTG 2 cut(s) 340, 392
AoxI GGCC 5 cut(s) 29, 38, 181, 810, 964
ApeKI GCWGC 6 cut(s) 353, 433, 545, 800, 910, 1477
ApoI RAATTY 1 cut(s) 1547
ArsI GACNNNNNNTTYG 2 cut(s) 1384, 1416
Asp700I GAANNNNTTC 2 cut(s) 830, 1041
AspS9I GGNCC 1 cut(s) 39
AsuHPI GGTGA 2 cut(s) 214, 1193
BaeGI GKGCMC 1 cut(s) 319
BanII GRGCYC 2 cut(s) 212, 1410
BbsI GAAGAC 1 cut(s) 760
BbvI GCAGC 6 cut(s) 340, 420, 532, 787, 922, 1464
BccI CCATC 5 cut(s) 780, 956, 1023, 1236, 1513
BciT130I CCWGG 4 cut(s) 226, 707, 814, 1368
BcoDI GTCTC 4 cut(s) 358, 460, 1145, 1157
BcuI ACTAGT 1 cut(s) 593
BfaI CTAG 1 cut(s) 594
BfmI CTRYAG 1 cut(s) 620
BfrI CTTAAG 1 cut(s) 905
BglI GCCNNNNNGGC 2 cut(s) 37, 1414
BisI GCNGC 8 cut(s) 15, 29, 354, 434, 546, 801, 911, 1478
BlsI GCNGC 8 cut(s) 16, 30, 355, 435, 547, 802, 912, 1479
Bme1390I CCNGG 4 cut(s) 226, 707, 814, 1368
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 989, 1407
BmrFI CCNGG 4 cut(s) 226, 707, 814, 1368
BmsI GCATC 3 cut(s) 1222, 1311, 1571
BpiI GAAGAC 1 cut(s) 760
BpuEI CTTGAG 1 cut(s) 617
BsaBI GATNNNNATC 1 cut(s) 669
BsaI GGTCTC 1 cut(s) 358
BsaJI CCNNGG 3 cut(s) 549, 577, 1502
BsaXI ACNNNNNCTCC 4 cut(s) 420, 450, 831, 861
Bsc4I CCNNNNNNNGG 3 cut(s) 406, 1057, 1242
Bse1I ACTGG 2 cut(s) 1303, 1319
Bse3DI GCAATG 2 cut(s) 810, 1358
Bse8I GATNNNNATC 1 cut(s) 669
BseBI CCWGG 4 cut(s) 226, 707, 814, 1368
BseDI CCNNGG 3 cut(s) 549, 577, 1502
BseGI GGATG 4 cut(s) 702, 1247, 1524, 1564
BseJI GATNNNNATC 1 cut(s) 669
BseLI CCNNNNNNNGG 3 cut(s) 406, 1057, 1242
BseMI GCAATG 2 cut(s) 810, 1358
BseMII CTCAG 3 cut(s) 137, 231, 1386
BseNI ACTGG 2 cut(s) 1303, 1319
BseRI GAGGAG 1 cut(s) 852
BseSI GKGCMC 1 cut(s) 319
BseXI GCAGC 6 cut(s) 340, 420, 532, 787, 922, 1464
BsgI GTGCAG 1 cut(s) 1463
BshFI GGCC 5 cut(s) 31, 40, 183, 812, 966
BsiSI CCGG 2 cut(s) 25, 967
BslFI GGGAC 1 cut(s) 542
BslI CCNNNNNNNGG 3 cut(s) 406, 1057, 1242
BsmAI GTCTC 4 cut(s) 358, 460, 1145, 1157
BsmBI CGTCTC 1 cut(s) 1157
BsmFI GGGAC 1 cut(s) 542
BsmI GAATGC 1 cut(s) 889
BsnI GGCC 5 cut(s) 31, 40, 183, 812, 966
Bso31I GGTCTC 1 cut(s) 358
Bsp1286I GDGCHC 3 cut(s) 212, 319, 1410
Bsp143I GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
BspACI CCGC 5 cut(s) 7, 14, 17, 28, 325
BspANI GGCC 5 cut(s) 31, 40, 183, 812, 966
BspCNI CTCAG 3 cut(s) 136, 230, 1387
BspLI GGNNCC 2 cut(s) 989, 1407
BspPI GGATC 4 cut(s) 316, 1104, 1220, 1442
BspTI CTTAAG 1 cut(s) 905
BspTNI GGTCTC 1 cut(s) 358
BsrBI CCGCTC 1 cut(s) 14
BsrDI GCAATG 2 cut(s) 810, 1358
BsrI ACTGG 2 cut(s) 1303, 1319
BssECI CCNNGG 3 cut(s) 549, 577, 1502
BssMI GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
BssT1I CCWWGG 1 cut(s) 577
Bst2UI CCWGG 4 cut(s) 226, 707, 814, 1368
Bst4CI ACNGT 6 cut(s) 420, 847, 956, 1023, 1444, 1503
BstAFI CTTAAG 1 cut(s) 905
BstDEI CTNAG 3 cut(s) 123, 217, 1395
BstDSI CCRYGG 1 cut(s) 1502
BstENI CCTNNNNNAGG 1 cut(s) 1055
BstF5I GGATG 4 cut(s) 702, 1247, 1524, 1564
BstKTI GATC 7 cut(s) 234, 324, 1099, 1217, 1228, 1336, 1450
BstMAI GTCTC 4 cut(s) 358, 460, 1145, 1157
BstMBI GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
BstMWI GCNNNNNNNGC 5 cut(s) 37, 809, 910, 1405, 1414
BstNI CCWGG 4 cut(s) 226, 707, 814, 1368
BstNSI RCATGY 2 cut(s) 1158, 1421
BstSCI CCNGG 4 cut(s) 224, 705, 812, 1366
BstSFI CTRYAG 1 cut(s) 620
BstSLI GKGCMC 1 cut(s) 319
BstV1I GCAGC 6 cut(s) 340, 420, 532, 787, 922, 1464
BstV2I GAAGAC 1 cut(s) 760
BstX2I RGATCY 2 cut(s) 321, 1096
BstYI RGATCY 2 cut(s) 321, 1096
BsuRI GGCC 5 cut(s) 31, 40, 183, 812, 966
BtgI CCRYGG 1 cut(s) 1502
BtsCI GGATG 4 cut(s) 702, 1247, 1524, 1564
BtsI GCAGTG 1 cut(s) 93
BtsIMutI CAGTG 4 cut(s) 93, 241, 961, 1283
CaiI CAGNNNCTG 2 cut(s) 340, 392
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 3 cut(s) 416, 421, 1528
CspCI CAANNNNNGTGG 2 cut(s) 1353, 1388
CviAII CATG 7 cut(s) 164, 457, 652, 1155, 1159, 1413, 1418
CviQI GTAC 3 cut(s) 416, 421, 1528
DdeI CTNAG 3 cut(s) 123, 217, 1395
DpnI GATC 7 cut(s) 233, 323, 1098, 1216, 1227, 1335, 1449
DpnII GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
EaeI YGGCCR 2 cut(s) 29, 964
EciI GGCGGA 2 cut(s) 22, 32
Eco130I CCWWGG 1 cut(s) 577
Eco147I AGGCCT 2 cut(s) 183, 812
Eco24I GRGCYC 2 cut(s) 212, 1410
Eco31I GGTCTC 1 cut(s) 358
Eco57I CTGAAG 5 cut(s) 216, 278, 699, 817, 1073
EcoNI CCTNNNNNAGG 1 cut(s) 1055
EcoRII CCWGG 4 cut(s) 224, 705, 812, 1366
EcoT14I CCWWGG 1 cut(s) 577
EcoT22I ATGCAT 1 cut(s) 1160
EcoT38I GRGCYC 2 cut(s) 212, 1410
ErhI CCWWGG 1 cut(s) 577
Esp3I CGTCTC 1 cut(s) 1157
FaeI CATG 7 cut(s) 167, 460, 655, 1158, 1162, 1416, 1421
FalI AAGNNNNNCTT 4 cut(s) 352, 384, 752, 784
FaqI GGGAC 1 cut(s) 542
FatI CATG 7 cut(s) 163, 456, 651, 1154, 1158, 1412, 1417
Fnu4HI GCNGC 8 cut(s) 15, 29, 354, 434, 546, 801, 911, 1478
FokI GGATG 4 cut(s) 689, 1254, 1531, 1551
FriOI GRGCYC 2 cut(s) 212, 1410
Fsp4HI GCNGC 8 cut(s) 15, 29, 354, 434, 546, 801, 911, 1478
FspBI CTAG 1 cut(s) 594
GluI GCNGC 8 cut(s) 15, 29, 354, 434, 546, 801, 911, 1478
HaeIII GGCC 5 cut(s) 31, 40, 183, 812, 966
HapII CCGG 2 cut(s) 25, 967
Hin1II CATG 7 cut(s) 167, 460, 655, 1158, 1162, 1416, 1421
HincII GTYRAC 1 cut(s) 1377
HindII GTYRAC 1 cut(s) 1377
HindIII AAGCTT 1 cut(s) 258
HinfI GANTC 4 cut(s) 131, 337, 383, 920
HpaII CCGG 2 cut(s) 25, 967
HphI GGTGA 2 cut(s) 214, 1193
Hpy166II GTNNAC 1 cut(s) 1377
Hpy188I TCNGA 9 cut(s) 126, 388, 608, 697, 836, 925, 987, 1191, 1338
Hpy8I GTNNAC 1 cut(s) 1377
HpyAV CCTTC 7 cut(s) 39, 173, 302, 802, 1051, 1087, 1459
HpyCH4III ACNGT 6 cut(s) 420, 847, 956, 1023, 1444, 1503
HpyCH4IV ACGT 3 cut(s) 1166, 1340, 1379
HpyCH4V TGCA 8 cut(s) 86, 395, 452, 803, 1158, 1480, 1576, 1584
HpyF10VI GCNNNNNNNGC 5 cut(s) 37, 809, 910, 1405, 1414
HpyF3I CTNAG 3 cut(s) 123, 217, 1395
HpySE526I ACGT 3 cut(s) 1166, 1340, 1379
Hsp92II CATG 7 cut(s) 167, 460, 655, 1158, 1162, 1416, 1421
Kzo9I GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
LmnI GCTCC 4 cut(s) 441, 918, 1142, 1405
Lsp1109I GCAGC 6 cut(s) 340, 420, 532, 787, 922, 1464
LweI GCATC 3 cut(s) 1222, 1311, 1571
MaeI CTAG 1 cut(s) 594
MaeII ACGT 3 cut(s) 1166, 1340, 1379
MaeIII GTNAC 6 cut(s) 220, 236, 778, 841, 935, 1294
MalI GATC 7 cut(s) 233, 323, 1098, 1216, 1227, 1335, 1449
MbiI CCGCTC 1 cut(s) 14
MboI GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
MboII GAAGA 5 cut(s) 209, 506, 760, 1066, 1522
MflI RGATCY 2 cut(s) 321, 1096
MhlI GDGCHC 3 cut(s) 212, 319, 1410
MluCI AATT 4 cut(s) 308, 727, 1547, 1585
MlyI GAGTC 1 cut(s) 914
MmeI TCCRAC 1 cut(s) 771
Mph1103I ATGCAT 1 cut(s) 1160
MroXI GAANNNNTTC 2 cut(s) 830, 1041
MseI TTAA 5 cut(s) 311, 471, 740, 906, 1011
MslI CAYNNNNRTG 3 cut(s) 461, 684, 1485
MspA1I CMGCKG 2 cut(s) 433, 589
MspCI CTTAAG 1 cut(s) 905
MspI CCGG 2 cut(s) 25, 967
MspR9I CCNGG 4 cut(s) 226, 707, 814, 1368
Mva1269I GAATGC 1 cut(s) 889
MvaI CCWGG 4 cut(s) 226, 707, 814, 1368
MwoI GCNNNNNNNGC 5 cut(s) 37, 809, 910, 1405, 1414
NdeII GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
NlaIII CATG 7 cut(s) 167, 460, 655, 1158, 1162, 1416, 1421
NlaIV GGNNCC 2 cut(s) 989, 1407
NmeAIII GCCGAG 1 cut(s) 574
NmuCI GTSAC 3 cut(s) 220, 236, 841
NsiI ATGCAT 1 cut(s) 1160
NspI RCATGY 2 cut(s) 1158, 1421
PceI AGGCCT 2 cut(s) 183, 812
PctI GAATGC 1 cut(s) 889
PdmI GAANNNNTTC 2 cut(s) 830, 1041
PfeI GAWTC 3 cut(s) 131, 337, 383
PkrI GCNGC 8 cut(s) 16, 30, 355, 435, 547, 802, 912, 1479
PleI GAGTC 1 cut(s) 914
PpsI GAGTC 1 cut(s) 914
Psp6I CCWGG 4 cut(s) 224, 705, 812, 1366
PspGI CCWGG 4 cut(s) 224, 705, 812, 1366
PspN4I GGNNCC 2 cut(s) 989, 1407
PspPI GGNCC 1 cut(s) 39
PstNI CAGNNNCTG 2 cut(s) 340, 392
PsuI RGATCY 2 cut(s) 321, 1096
PvuII CAGCTG 2 cut(s) 433, 589
RsaI GTAC 3 cut(s) 417, 422, 1529
RsaNI GTAC 3 cut(s) 416, 421, 1528
RseI CAYNNNNRTG 3 cut(s) 461, 684, 1485
SaqAI TTAA 5 cut(s) 311, 471, 740, 906, 1011
SatI GCNGC 8 cut(s) 15, 29, 354, 434, 546, 801, 911, 1478
Sau3AI GATC 7 cut(s) 231, 321, 1096, 1214, 1225, 1333, 1447
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 1 cut(s) 914
ScrFI CCNGG 4 cut(s) 226, 707, 814, 1368
SduI GDGCHC 3 cut(s) 212, 319, 1410
SfaNI GCATC 3 cut(s) 1222, 1311, 1571
SfcI CTRYAG 1 cut(s) 620
SfiI GGCCNNNNNGGCC 1 cut(s) 37
SmiMI CAYNNNNRTG 3 cut(s) 461, 684, 1485
SmlI CTYRAG 2 cut(s) 632, 905
SmoI CTYRAG 2 cut(s) 632, 905
SpeI ACTAGT 1 cut(s) 593
Sse9I AATT 4 cut(s) 308, 727, 1547, 1585
SseBI AGGCCT 2 cut(s) 183, 812
SsiI CCGC 5 cut(s) 7, 14, 17, 28, 325
SspMI CTAG 1 cut(s) 594
StuI AGGCCT 2 cut(s) 183, 812
StyD4I CCNGG 4 cut(s) 224, 705, 812, 1366
StyI CCWWGG 1 cut(s) 577
TaaI ACNGT 6 cut(s) 420, 847, 956, 1023, 1444, 1503
TaiI ACGT 3 cut(s) 1169, 1343, 1382
TaqI TCGA 3 cut(s) 849, 1115, 1149
TasI AATT 4 cut(s) 308, 727, 1547, 1585
TatI WGTACW 2 cut(s) 415, 1527
TauI GCSGC 2 cut(s) 17, 31
TfiI GAWTC 3 cut(s) 131, 337, 383
Tru1I TTAA 5 cut(s) 311, 471, 740, 906, 1011
Tru9I TTAA 5 cut(s) 311, 471, 740, 906, 1011
TscAI CASTG 4 cut(s) 93, 241, 961, 1283
TseFI GTSAC 3 cut(s) 220, 236, 841
TseI GCWGC 6 cut(s) 353, 433, 545, 800, 910, 1477
Tsp45I GTSAC 3 cut(s) 220, 236, 841
TspDTI ATGAA 5 cut(s) 668, 801, 821, 839, 1271
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 4 cut(s) 93, 241, 961, 1283
Vha464I CTTAAG 1 cut(s) 905
XagI CCTNNNNNAGG 1 cut(s) 1055
XapI RAATTY 1 cut(s) 1547
XceI RCATGY 2 cut(s) 1158, 1421
XmnI GAANNNNTTC 2 cut(s) 830, 1041
XspI CTAG 1 cut(s) 594
Zsp2I ATGCAT 1 cut(s) 1160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.