Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006688

Physical Location & Seq

Genomic Coordinates Reverse (-)

9297409 .. 9298107

Gene Structure 699 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22805

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGGCTCAGTCTGAATCTGAAATAGCAGTTGCTGCTCGTCCAGTTGAGCCATTGAGGAGGAACCCACCAAGAACTGCACGTTGTGACGCGAAGCTTCGACAATTGAAGGCTCTCATACCTCCTGTCCCTGTGCAAGAGCAGCGGGTGAAGGAACCAAAACCAACTAAAGTGCATTTGAAGAAGTTCCCCTTTGGTCGATTTTTATGCTTTAGGTGTGAACGTACTCTGCAGGAAGCGTTATCAGTAGAACGCACTACTTTGCTTCCATTAGCTGATGCGCTTTCAGCTGGGGAACGGTTTAAGGATCTTATTGCTGCTGGTGATCCATCATTGGGTGCTTTGACAATGATAGCTTTGAAAAAGGTGGTCTTTTTCTGGCAGCATCATTACTCAACCAAGGTAATTAATCTTCATTCTTATCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

141

Amino Acids

15.96

Weight (kDa)

9.96

Isoelectric Point (pI)

48.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20810
fragaria_vesca	FvH4_6g44800
malus_domestica	MD09G1093100.v1.1 MD17G1083200.v1.1
prunus_persica	Prupe.3G232100_v2.0.a1
pyrus_communis	pycom09g01830 pycom17g08100
rosa_chinensis	RchiOBHm_Chr2g0161971 RchiOBHm_Chr6g0254251
rosa_laevigata	RLG00000014931 RLG00000021312
rosa_multiflora	Rmu_sc0003711.1_g000023 Rmu_sc0008428.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088430 Rroxscaffold_7G00211000 Rroxscaffold_7G00211020
rosa_rugosa	Rorug02G0493700
rosa_samantha	Rh2AG559600 Rh2BG573000 Rh2CG543100 Rh2DG582800 Rh6AG067500 Rh6BG060600 Rh6DG057600
rosa_wichuraiana	Rw2G046310 Rw6G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	89
AciI	CCGC	1 cut(s)	142
AclWI	GGATC	2 cut(s)	312, 317
AdeI	CACNNNGTG	1 cut(s)	83
AfaI	GTAC	1 cut(s)	223
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	3 cut(s)	106, 178, 358
AluBI	AGCT	4 cut(s)	94, 272, 287, 353
AluI	AGCT	4 cut(s)	94, 272, 287, 353
AlwI	GGATC	2 cut(s)	312, 317
AlwNI	CAGNNNCTG	1 cut(s)	32
ApeKI	GCWGC	4 cut(s)	32, 139, 314, 379
AseI	ATTAAT	1 cut(s)	405
Asp700I	GAANNNNTTC	1 cut(s)	182
AspLEI	GCGC	1 cut(s)	280
AsuHPI	GGTGA	2 cut(s)	157, 332
BarI	GAAGNNNNNNTAC	2 cut(s)	393, 425
BbvI	GCAGC	4 cut(s)	19, 151, 301, 391
BccI	CCATC	1 cut(s)	334
BcgI	CGANNNNNNTGC	2 cut(s)	186, 220
BfmI	CTRYAG	1 cut(s)	227
BisI	GCNGC	4 cut(s)	33, 140, 315, 380
BlsI	GCNGC	4 cut(s)	34, 141, 316, 381
BmiI	GGNNCC	2 cut(s)	62, 153
BmsI	GCATC	2 cut(s)	265, 391
BsaJI	CCNNGG	1 cut(s)	396
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	1 cut(s)	41
BseDI	CCNNGG	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMII	CTCAG	1 cut(s)	20
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	70
BseXI	GCAGC	4 cut(s)	19, 151, 301, 391
BseYI	CCCAGC	1 cut(s)	287
BsgI	GTGCAG	1 cut(s)	60
Bsh1236I	CGCG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	110
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmFI	GGGAC	1 cut(s)	110
Bsp143I	GATC	2 cut(s)	304, 322
BspACI	CCGC	1 cut(s)	142
BspCNI	CTCAG	1 cut(s)	19
BspFNI	CGCG	1 cut(s)	89
BspLI	GGNNCC	2 cut(s)	62, 153
BspMAI	CTGCAG	1 cut(s)	231
BspPI	GGATC	2 cut(s)	312, 317
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	1 cut(s)	396
BssMI	GATC	2 cut(s)	304, 322
BssT1I	CCWWGG	1 cut(s)	396
Bst4CI	ACNGT	1 cut(s)	297
BstAPI	GCANNNNNTGC	1 cut(s)	32
BstDEI	CTNAG	1 cut(s)	6
BstFNI	CGCG	1 cut(s)	89
BstHHI	GCGC	1 cut(s)	280
BstKTI	GATC	2 cut(s)	307, 325
BstMBI	GATC	2 cut(s)	304, 322
BstMWI	GCNNNNNNNGC	3 cut(s)	32, 139, 284
BstSFI	CTRYAG	1 cut(s)	227
BstUI	CGCG	1 cut(s)	89
BstV1I	GCAGC	4 cut(s)	19, 151, 301, 391
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
CaiI	CAGNNNCTG	1 cut(s)	32
CfoI	GCGC	1 cut(s)	280
CseI	GACGC	1 cut(s)	95
Csp6I	GTAC	1 cut(s)	222
CviJI	RGCY	7 cut(s)	5, 49, 94, 110, 272, 287, 353
CviKI_1	RGCY	7 cut(s)	5, 49, 94, 110, 272, 287, 353
CviQI	GTAC	1 cut(s)	222
DdeI	CTNAG	1 cut(s)	6
DpnI	GATC	2 cut(s)	306, 324
DpnII	GATC	2 cut(s)	304, 322
DraIII	CACNNNGTG	1 cut(s)	83
Eco130I	CCWWGG	1 cut(s)	396
EcoT14I	CCWWGG	1 cut(s)	396
ErhI	CCWWGG	1 cut(s)	396
FaiI	YATR	2 cut(s)	116, 205
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 353, 385
FaqI	GGGAC	1 cut(s)	110
FauI	CCCGC	1 cut(s)	135
Fnu4HI	GCNGC	4 cut(s)	33, 140, 315, 380
Fsp4HI	GCNGC	4 cut(s)	33, 140, 315, 380
GlaI	GCGC	1 cut(s)	279
GluI	GCNGC	4 cut(s)	33, 140, 315, 380
GsaI	CCCAGC	1 cut(s)	291
HgaI	GACGC	1 cut(s)	95
HhaI	GCGC	1 cut(s)	280
Hin6I	GCGC	1 cut(s)	278
HinP1I	GCGC	1 cut(s)	278
HindIII	AAGCTT	1 cut(s)	92
HinfI	GANTC	1 cut(s)	14
HphI	GGTGA	2 cut(s)	157, 332
Hpy166II	GTNNAC	1 cut(s)	218
Hpy188I	TCNGA	2 cut(s)	13, 19
Hpy8I	GTNNAC	1 cut(s)	218
HpyAV	CCTTC	2 cut(s)	100, 142
HpyCH4III	ACNGT	1 cut(s)	297
HpyCH4IV	ACGT	2 cut(s)	79, 220
HpyCH4V	TGCA	4 cut(s)	77, 133, 172, 229
HpyF10VI	GCNNNNNNNGC	3 cut(s)	32, 139, 284
HpyF3I	CTNAG	1 cut(s)	6
HpySE526I	ACGT	2 cut(s)	79, 220
HspAI	GCGC	1 cut(s)	278
Kzo9I	GATC	2 cut(s)	304, 322
LpnPI	CCDG	7 cut(s)	54, 135, 141, 215, 273, 303, 361
Lsp1109I	GCAGC	4 cut(s)	19, 151, 301, 391
LweI	GCATC	2 cut(s)	265, 391
MaeII	ACGT	2 cut(s)	79, 220
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	2 cut(s)	306, 324
MboI	GATC	2 cut(s)	304, 322
MboII	GAAGA	2 cut(s)	190, 401
MfeI	CAATTG	1 cut(s)	101
MflI	RGATCY	1 cut(s)	304
MluCI	AATT	2 cut(s)	101, 402
MnlI	CCTC	3 cut(s)	48, 51, 129
MroXI	GAANNNNTTC	1 cut(s)	182
MseI	TTAA	3 cut(s)	300, 405, 424
MspA1I	CMGCKG	2 cut(s)	142, 287
MunI	CAATTG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	89
MwoI	GCNNNNNNNGC	3 cut(s)	32, 139, 284
NdeII	GATC	2 cut(s)	304, 322
NlaIV	GGNNCC	2 cut(s)	62, 153
NmuCI	GTSAC	1 cut(s)	83
PdmI	GAANNNNTTC	1 cut(s)	182
PfeI	GAWTC	1 cut(s)	14
PkrI	GCNGC	4 cut(s)	34, 141, 316, 381
PshBI	ATTAAT	1 cut(s)	405
PspFI	CCCAGC	1 cut(s)	287
PspN4I	GGNNCC	2 cut(s)	62, 153
PstI	CTGCAG	1 cut(s)	231
PstNI	CAGNNNCTG	1 cut(s)	32
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	287
RsaI	GTAC	1 cut(s)	223
RsaNI	GTAC	1 cut(s)	222
SaqAI	TTAA	3 cut(s)	300, 405, 424
SatI	GCNGC	4 cut(s)	33, 140, 315, 380
Sau3AI	GATC	2 cut(s)	304, 322
SfaNI	GCATC	2 cut(s)	265, 391
SfcI	CTRYAG	1 cut(s)	227
Sse9I	AATT	2 cut(s)	101, 402
SsiI	CCGC	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	396
TaaI	ACNGT	1 cut(s)	297
TaiI	ACGT	2 cut(s)	82, 223
TaqI	TCGA	2 cut(s)	97, 196
TasI	AATT	2 cut(s)	101, 402
TfiI	GAWTC	1 cut(s)	14
Tru1I	TTAA	3 cut(s)	300, 405, 424
Tru9I	TTAA	3 cut(s)	300, 405, 424
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	4 cut(s)	32, 139, 314, 379
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	401
VspI	ATTAAT	1 cut(s)	405
XmnI	GAANNNNTTC	1 cut(s)	182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.