Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006688

Physical Location & Seq

Genomic Coordinates Reverse (-)

9601151 .. 9602394

Gene Structure 1244 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG060600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

ATGGTCTGGAGGGCACACATACATCCTGTCCTTGTGCAAGAGCAGCGGGTGAAGGAACCAAAACCAATTAAAGTGCATTTGAAGAAGTTCCCCTCTCATCGAGTTTTATGCTTCAGGTCTGAACGTATTTTGCAGGAAGCGTTATCAGCAGAACGCACTACTTTGCTTCCATTAGTTGATGCGCTTTCAGCAGGGGAACGGTTTAAGGATATTATTGCTGCTGGTGATCTATCATTGGGTGCTTTGATAATGATGGCTTTGAAGAAGGTGATCTTTTTCTGGCAGCACCACTATTCAACCAAGCTTCCACTAACTGATGCACTTGTGGCAGGGGAACGGTTGAAGGATCTTATTACTGCTGGTGATCCATCATTGGGTGCTTTGACAATGATGGCTTTGAAAAAGGTGGTCTTTTTCTGGCAGCATCATTACTCAACCAAGTTTCAAATTTTTTATTTGGATCATAGCCCGGTTGCTGATTACATTTGCAAGTGCATGAATACCGTGCAGATGACGGTTGCTGGTGCTATTGTGGCTGCTAGGAATCGGTGTCAATTTCCTAATCCAATGGATCCTAATCCAGCAGATTATGCACCAGTTTTGGGTTCTCTGCTGTGGGTCATCTTTGGGCTATTCTGGCTGTTGAGAATTCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

218

Amino Acids

24.79

Weight (kDa)

9.43

Isoelectric Point (pI)

34.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006688)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G20810
fragaria_vesca	FvH4_6g44800
malus_domestica	MD09G1093100.v1.1 MD17G1083200.v1.1
prunus_persica	Prupe.3G232100_v2.0.a1
pyrus_communis	pycom09g01830 pycom17g08100
rosa_chinensis	RchiOBHm_Chr2g0161971 RchiOBHm_Chr6g0254251
rosa_laevigata	RLG00000014931 RLG00000021312
rosa_multiflora	Rmu_sc0003711.1_g000023 Rmu_sc0008428.1_g000002
rosa_roxburghii	Rroxscaffold_2G00088430 Rroxscaffold_7G00211000 Rroxscaffold_7G00211020
rosa_rugosa	Rorug02G0493700
rosa_samantha	Rh2AG559600 Rh2BG573000 Rh2CG543100 Rh2DG582800 Rh6AG067500 Rh6BG060600 Rh6DG057600
rosa_wichuraiana	Rw2G046310 Rw6G005940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	46
AclWI	GGATC	5 cut(s)	354, 359, 468, 566, 579
AcsI	RAATTY	2 cut(s)	447, 648
AcuI	CTGAAG	1 cut(s)	97
AfiI	CCNNNNNNNGG	2 cut(s)	374, 602
AgsI	TTSAA	6 cut(s)	82, 262, 297, 343, 400, 446
AluBI	AGCT	1 cut(s)	304
AluI	AGCT	1 cut(s)	304
AlwI	GGATC	5 cut(s)	354, 359, 468, 566, 579
ApeKI	GCWGC	5 cut(s)	43, 218, 283, 421, 536
ApoI	RAATTY	2 cut(s)	447, 648
Asp700I	GAANNNNTTC	1 cut(s)	86
AspLEI	GCGC	1 cut(s)	184
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	4 cut(s)	61, 236, 280, 374
BaeGI	GKGCMC	1 cut(s)	16
BamHI	GGATCC	1 cut(s)	571
BbvI	GCAGC	5 cut(s)	55, 205, 295, 433, 523
BccI	CCATC	3 cut(s)	247, 376, 385
BcgI	CGANNNNNNTGC	2 cut(s)	90, 124
BcnI	CCSGG	1 cut(s)	470
BfaI	CTAG	1 cut(s)	540
BisI	GCNGC	5 cut(s)	44, 219, 284, 422, 537
BlsI	GCNGC	5 cut(s)	45, 220, 285, 423, 538
Bme1390I	CCNGG	1 cut(s)	470
BmiI	GGNNCC	2 cut(s)	57, 573
BmrFI	CCNGG	1 cut(s)	470
BmsI	GCATC	3 cut(s)	169, 307, 433
BpmI	CTGGAG	1 cut(s)	28
BpuMI	CCSGG	1 cut(s)	470
BsaBI	GATNNNNATC	1 cut(s)	576
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 602
Bse1I	ACTGG	1 cut(s)	596
Bse8I	GATNNNNATC	1 cut(s)	576
BseGI	GGATG	1 cut(s)	22
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	2 cut(s)	374, 602
BseNI	ACTGG	1 cut(s)	596
BseSI	GKGCMC	1 cut(s)	16
BseXI	GCAGC	5 cut(s)	55, 205, 295, 433, 523
BsgI	GTGCAG	1 cut(s)	527
BsiSI	CCGG	1 cut(s)	470
BslI	CCNNNNNNNGG	2 cut(s)	374, 602
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
BspACI	CCGC	1 cut(s)	46
BspLI	GGNNCC	2 cut(s)	57, 573
BspPI	GGATC	5 cut(s)	354, 359, 468, 566, 579
BsrI	ACTGG	1 cut(s)	596
BssMI	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
Bst4CI	ACNGT	4 cut(s)	201, 339, 505, 517
BstAPI	GCANNNNNTGC	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	22
BstHHI	GCGC	1 cut(s)	184
BstKTI	GATC	6 cut(s)	229, 273, 349, 367, 463, 574
BstMBI	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
BstMWI	GCNNNNNNNGC	7 cut(s)	43, 146, 188, 326, 533, 590, 637
BstSCI	CCNGG	1 cut(s)	468
BstSLI	GKGCMC	1 cut(s)	16
BstV1I	GCAGC	5 cut(s)	55, 205, 295, 433, 523
BstX2I	RGATCY	2 cut(s)	346, 571
BstYI	RGATCY	2 cut(s)	346, 571
BtsCI	GGATG	1 cut(s)	22
CfoI	GCGC	1 cut(s)	184
CviAII	CATG	1 cut(s)	496
CviJI	RGCY	7 cut(s)	257, 304, 395, 468, 536, 631, 640
CviKI_1	RGCY	7 cut(s)	257, 304, 395, 468, 536, 631, 640
DpnI	GATC	6 cut(s)	228, 272, 348, 366, 462, 573
DpnII	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
Eco57I	CTGAAG	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	648
FaeI	CATG	1 cut(s)	499
FaiI	YATR	5 cut(s)	20, 109, 465, 497, 591
FalI	AAGNNNNNCTT	4 cut(s)	257, 289, 395, 427
FatI	CATG	1 cut(s)	495
FauI	CCCGC	1 cut(s)	39
Fnu4HI	GCNGC	5 cut(s)	44, 219, 284, 422, 537
FokI	GGATG	1 cut(s)	9
Fsp4HI	GCNGC	5 cut(s)	44, 219, 284, 422, 537
FspBI	CTAG	1 cut(s)	540
GlaI	GCGC	1 cut(s)	183
GluI	GCNGC	5 cut(s)	44, 219, 284, 422, 537
GsuI	CTGGAG	1 cut(s)	28
HapII	CCGG	1 cut(s)	470
HhaI	GCGC	1 cut(s)	184
Hin1II	CATG	1 cut(s)	499
Hin6I	GCGC	1 cut(s)	182
HinP1I	GCGC	1 cut(s)	182
HindIII	AAGCTT	1 cut(s)	302
HinfI	GANTC	1 cut(s)	544
HpaII	CCGG	1 cut(s)	470
HphI	GGTGA	4 cut(s)	61, 236, 280, 374
Hpy188I	TCNGA	1 cut(s)	121
Hpy188III	TCNNGA	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	46, 259, 337
HpyCH4III	ACNGT	4 cut(s)	201, 339, 505, 517
HpyCH4IV	ACGT	1 cut(s)	124
HpyCH4V	TGCA	8 cut(s)	37, 76, 133, 320, 489, 495, 508, 593
HpyF10VI	GCNNNNNNNGC	7 cut(s)	43, 146, 188, 326, 533, 590, 637
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	1 cut(s)	499
HspAI	GCGC	1 cut(s)	182
Kzo9I	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
Lsp1109I	GCAGC	5 cut(s)	55, 205, 295, 433, 523
LweI	GCATC	3 cut(s)	169, 307, 433
MaeI	CTAG	1 cut(s)	540
MaeII	ACGT	1 cut(s)	124
MalI	GATC	6 cut(s)	228, 272, 348, 366, 462, 573
MboI	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
MboII	GAAGA	2 cut(s)	94, 274
MflI	RGATCY	2 cut(s)	346, 571
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	4 cut(s)	66, 447, 554, 648
MnlI	CCTC	2 cut(s)	3, 103
MroXI	GAANNNNTTC	1 cut(s)	86
MseI	TTAA	2 cut(s)	69, 204
MspA1I	CMGCKG	1 cut(s)	46
MspI	CCGG	1 cut(s)	470
MspR9I	CCNGG	1 cut(s)	470
MwoI	GCNNNNNNNGC	7 cut(s)	43, 146, 188, 326, 533, 590, 637
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
NlaIII	CATG	1 cut(s)	499
NlaIV	GGNNCC	2 cut(s)	57, 573
PdmI	GAANNNNTTC	1 cut(s)	86
PfeI	GAWTC	1 cut(s)	544
PkrI	GCNGC	5 cut(s)	45, 220, 285, 423, 538
PspN4I	GGNNCC	2 cut(s)	57, 573
PsuI	RGATCY	2 cut(s)	346, 571
SaqAI	TTAA	2 cut(s)	69, 204
SatI	GCNGC	5 cut(s)	44, 219, 284, 422, 537
Sau3AI	GATC	6 cut(s)	226, 270, 346, 364, 460, 571
ScrFI	CCNGG	1 cut(s)	470
SduI	GDGCHC	1 cut(s)	16
SetI	ASST	5 cut(s)	119, 127, 270, 306, 408
SfaNI	GCATC	3 cut(s)	169, 307, 433
Sse9I	AATT	4 cut(s)	66, 447, 554, 648
SsiI	CCGC	1 cut(s)	46
SspMI	CTAG	1 cut(s)	540
StyD4I	CCNGG	1 cut(s)	468
TaaI	ACNGT	4 cut(s)	201, 339, 505, 517
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	1 cut(s)	100
TasI	AATT	4 cut(s)	66, 447, 554, 648
TfiI	GAWTC	1 cut(s)	544
Tru1I	TTAA	2 cut(s)	69, 204
Tru9I	TTAA	2 cut(s)	69, 204
TseI	GCWGC	5 cut(s)	43, 218, 283, 421, 536
TspDTI	ATGAA	2 cut(s)	512, 641
XapI	RAATTY	2 cut(s)	447, 648
XmnI	GAANNNNTTC	1 cut(s)	86
XspI	CTAG	1 cut(s)	540

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.