Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Forward (+)

36392800 .. 36395374

Gene Structure 2575 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g48290.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2124 bp

ATGGAGATTCCTCTTTTAAGGTACCAAACGTTGTCGTTGGACCAGATCCAACGTAGCATTAGCTTCCCTCTGTCTTTCTCAGATTCCAAGTTCCCAAAGCAGAGATCTTTGTTTTCTGGGTACTCTTTTTACCTAAACAGACCAAAATGGAAGAACCCATTTTCCAGAATCCGGTGTTGTTCATATGTAGAGCAACAGCTGAAGCCTCGGCCCAGGCCCATTCCCGCCGAAGTCGAAGTTGAGGAGATAAAGGCGCCGCCTTTGGCGCAAGAAGAGGCTCAGATTGCAATACCCAGTTCTGGGATTTGTAGTCAGATTGAGAAGTTGGTTTTGTACAAGAGGTATAGGGAAGCGCTTGAAATGTTTGAGTTTTTGGAATCTAAAGGTGGGTATGAAGTTGGTGGTAGTACTTATGATGCTTTGGTGAGTGCTTGTATTAGCTTGAGATCGATTAGAGGAGTGAAGAGGGTGTTTGGTTATATGATTAGTAATGGGTTTGAGTTGGATCAGTATATGAGGAACAGGGTTTTGCTTATGCACGTGAAATGTGGGATGATGATTGATGCACGCCAGCTGTTTGGGGAAATGCCTGAGAGGAATTCGGTTTCGTGGAACACGATAATTGGGGGTCTGGTGGATTGTGGGGAGTTTGTGGAGGCTTTCGGGTTGTTTTTGGATATGTGGGAGGAGATTTGTGACGGGGAGTCGAGGGTGTTTGCCACAATGATAAGGGCTGCGGCTGGTTTGGGGGACATTTCTGCAGGGAGGGAGTTGCATTCGTGTTGCGTGAAGATGGGTGTGACTGCTGATATTTTTGTGTCTTGTGCATTGATTGATATGTATAGCAAGTGTGGGAGTATTGAAGATGCTCACTGTGTTTTTGATGAGATGCCGAAGAAGACAACTGTGGGGTGGAACACCATCATAGCAGGGTATGCGCTTCATGGTTATAGTGATGAGGCTTTGAGTATGTACTATGATATGCGTGATTCTGGTGTGCCGATGGATCATTTTACGTTTTCCATGATTATAAGAATCTGTGCCAGGTTGGCTTCATTAGAACATGCTAAGCAAGCTCATGCAGGTCTAGTTCGTCATGGTTTTGGGTTGGACATAGTGGCAAACACATCACTGGTGGACTTCTATAGCAAGTGGGGAAGGATAGAAGATGCACGTCATGTCTTTGACCAGATGCCTAACAAGAATGTCATATCTTGGAATGCCTTGATTGCTGGATATGGTAATCATGGTCGGGGTGATGAGGCTGTTGAGATGTTTGAGAAGATGCTTGAGGAAAGAATGGTACCCAATCACGTTACATTTCTTGCTGTATTGTCTGCTTGCAGCCGTTCAGGTTTATCAGAACGTGGATGGGAAATTTTTGAATCAATGAGCAGAGATTACAAGGTTAAACCCCGTGCTATGCATTATGCCTGTATGATTGAACTGCTTGGACAGGAGGGGAACTTAGATGAAGCCTTTGCACTAATAAGAGCCGCTCCCTTTAAGCCTACAGCAAACATGTGGGCTGCTCTGCTGACAGCTTGTCGAATCAATGAAAATTTAGAGCTTGGCAAAATTGCCGCCAAAGAGCTCTATGGAATGGAGCCTCAGAAGCTAAGTAATTATGTTGTGCTCCTAAATATATACAACAGTTGTGGAAAGTTGAAGGAAGCTGCTGCTGTTGTTCAGACTCTAAGAAGGAAGGGTTTGAGAATGCTTCCGGCATGCAGTTGGATTGAAATTAAGAAACAGGTACATATTTTTCATTCCGGAGATGAAAGGCATGCCCAAACAAGAGAGATTTATGAGACAGTGGACGACTTGATGGTCAAGATTAGAAGACGTGGTTACATCCGTGATGAGAAGCATCTTCTTCCTGATGTGGATGAACACGAGCGCATCTCAGCTTACCACAGTGAGAAACTGGCGATAGCTTATGGATTGATCAGTACATCAGATGGGACGCCACTGCAAATTGTGCAAGGACATCGCATCTGCCCGGACTGCCATTCTGCAATCAAGTTAATTGCTAAGGTGACTGAACGAGAAATTGTCGTGAGGGACGCCAGCAGATTCCACCACTTCAAGAATGGGAGTTGTTCTTGTGGGAATTACTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

708

Amino Acids

80.11

Weight (kDa)

6.75

Isoelectric Point (pI)

46.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	301 - 349	4.6e-11	PPR repeat family
PPR	PF01535	305 - 333	3e-06	PPR repeat
PPR_2	PF13041	401 - 449	4.9e-12	PPR repeat family
PPR_1	PF12854	402 - 429	6.2e-06	PPR repeat
PPR_3	PF13812	402 - 448	9.6e-06	Pentatricopeptide repeat domain
PPR	PF01535	404 - 432	1.9e-08	PPR repeat
E_motif	PF20431	521 - 581	1.4e-10	E motif
DYW_deaminase	PF14432	617 - 707	7.4e-35	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1031
AasI	GACNNNNNNGTC	1 cut(s)	1829
Acc36I	ACCTGC	1 cut(s)	1073
Acc65I	GGTACC	2 cut(s)	21, 1303
AccB1I	GGYRCC	3 cut(s)	21, 253, 1303
AccBSI	CCGCTC	1 cut(s)	1499
AccIII	TCCGGA	1 cut(s)	1772
AciI	CCGC	5 cut(s)	225, 257, 737, 1497, 1584
AclI	AACGTT	1 cut(s)	29
AclWI	GGATC	3 cut(s)	40, 513, 1014
AcsI	RAATTY	3 cut(s)	598, 1377, 1561
AcuI	CTGAAG	1 cut(s)	221
AcvI	CACGTG	1 cut(s)	541
AcyI	GRCGYC	3 cut(s)	254, 1967, 2067
AfaI	GTAC	8 cut(s)	23, 122, 335, 409, 974, 1305, 1758, 1954
AfeI	AGCGCT	1 cut(s)	354
AfiI	CCNNNNNNNGG	3 cut(s)	171, 299, 300
AflIII	ACRYGT	1 cut(s)	1521
AgsI	TTSAA	7 cut(s)	359, 863, 1385, 1445, 1669, 1742, 2089
AhdI	GACNNNNNGTC	2 cut(s)	703, 1545
AjiI	CACGTC	2 cut(s)	1175, 1847
AjnI	CCWGG	2 cut(s)	212, 1043
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
Alw21I	GWGCWC	2 cut(s)	1596, 1638
Alw26I	GTCTC	1 cut(s)	1805
AlwI	GGATC	3 cut(s)	40, 513, 1014
Aor13HI	TCCGGA	1 cut(s)	1772
Aor51HI	AGCGCT	1 cut(s)	354
AoxI	GGCC	2 cut(s)	209, 215
ApeKI	GCWGC	5 cut(s)	734, 1344, 1529, 1676, 1679
ApoI	RAATTY	3 cut(s)	598, 1377, 1561
Asp718I	GGTACC	2 cut(s)	21, 1303
AspLEI	GCGC	5 cut(s)	256, 268, 355, 940, 1902
AspS9I	GGNCC	3 cut(s)	40, 210, 216
AsuC2I	CCSGG	1 cut(s)	2003
AsuHPI	GGTGA	3 cut(s)	436, 1268, 2050
AvaII	GGWCC	1 cut(s)	40
BanI	GGYRCC	3 cut(s)	21, 253, 1303
BanII	GRGCYC	1 cut(s)	1596
BauI	CACGAG	1 cut(s)	1895
BbrPI	CACGTG	1 cut(s)	541
BbsI	GAAGAC	2 cut(s)	905, 1849
Bbv12I	GWGCWC	2 cut(s)	1596, 1638
BbvI	GCAGC	5 cut(s)	721, 1356, 1516, 1663, 1666
BccI	CCATC	6 cut(s)	787, 929, 997, 1365, 1822, 1955
BceAI	ACGGC	1 cut(s)	1332
BcgI	CGANNNNNNTGC	2 cut(s)	1973, 2007
BciT130I	CCWGG	2 cut(s)	214, 1045
BclI	TGATCA	1 cut(s)	1947
BcnI	CCSGG	1 cut(s)	2003
BcoDI	GTCTC	1 cut(s)	1805
BfaI	CTAG	1 cut(s)	1088
BfmI	CTRYAG	3 cut(s)	759, 1144, 1512
BfoI	RGCGCY	2 cut(s)	257, 356
BfuAI	ACCTGC	1 cut(s)	1073
BglI	GCCNNNNNGGC	1 cut(s)	1049
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	9 cut(s)	257, 735, 738, 1345, 1497, 1530, 1584, 1677, 1680
BlpI	GCTNAGC	1 cut(s)	1068
BlsI	GCNGC	9 cut(s)	258, 736, 739, 1346, 1498, 1531, 1585, 1678, 1681
BmcAI	AGTACT	1 cut(s)	409
Bme1390I	CCNGG	3 cut(s)	214, 1045, 2003
Bme18I	GGWCC	1 cut(s)	40
BmeRI	GACNNNNNGTC	2 cut(s)	703, 1545
BmgBI	CACGTC	2 cut(s)	1175, 1847
BmgT120I	GGNCC	3 cut(s)	40, 210, 216
BmiI	GGNNCC	4 cut(s)	23, 255, 1305, 1608
BmrFI	CCNGG	3 cut(s)	214, 1045, 2003
BmrI	ACTGGG	1 cut(s)	288
BmuI	ACTGGG	1 cut(s)	288
BpiI	GAAGAC	2 cut(s)	905, 1849
BplI	GAGNNNNNCTC	2 cut(s)	1889, 1921
Bpu10I	CCTNAGC	1 cut(s)	2034
Bpu1102I	GCTNAGC	1 cut(s)	1068
BpuEI	CTTGAG	2 cut(s)	463, 1310
BpuMI	CCSGG	1 cut(s)	2003
Bsa29I	ATCGAT	1 cut(s)	449
BsaAI	YACGTR	1 cut(s)	541
BsaHI	GRCGYC	3 cut(s)	254, 1967, 2067
BsaJI	CCNNGG	2 cut(s)	206, 212
BsaWI	WCCGGW	2 cut(s)	171, 1772
Bsc4I	CCNNNNNNNGG	3 cut(s)	171, 299, 300
Bse1I	ACTGG	4 cut(s)	294, 1137, 1932, 2123
BseAI	TCCGGA	1 cut(s)	1772
BseBI	CCWGG	2 cut(s)	214, 1045
BseCI	ATCGAT	1 cut(s)	449
BseDI	CCNNGG	2 cut(s)	206, 212
BseGI	GGATG	4 cut(s)	558, 1376, 1854, 1894
BseLI	CCNNNNNNNGG	3 cut(s)	171, 299, 300
BseMII	CTCAG	5 cut(s)	93, 293, 582, 1625, 1920
BseNI	ACTGG	4 cut(s)	294, 1137, 1932, 2123
BseRI	GAGGAG	3 cut(s)	257, 471, 701
BseXI	GCAGC	5 cut(s)	721, 1356, 1516, 1663, 1666
BshFI	GGCC	2 cut(s)	211, 217
BshNI	GGYRCC	3 cut(s)	21, 253, 1303
BshVI	ATCGAT	1 cut(s)	449
BsiHKAI	GWGCWC	2 cut(s)	1596, 1638
BsiSI	CCGG	4 cut(s)	172, 1724, 1773, 2003
BslFI	GGGAC	3 cut(s)	764, 1978, 2078
BslI	CCNNNNNNNGG	3 cut(s)	171, 299, 300
BsmAI	GTCTC	1 cut(s)	1805
BsmFI	GGGAC	3 cut(s)	764, 1978, 2078
BsmI	GAATGC	3 cut(s)	775, 1225, 1722
BsnI	GGCC	2 cut(s)	211, 217
Bsp1286I	GDGCHC	2 cut(s)	1596, 1638
Bsp13I	TCCGGA	1 cut(s)	1772
Bsp1407I	TGTACA	1 cut(s)	333
Bsp143I	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
Bsp1720I	GCTNAGC	1 cut(s)	1068
BspACI	CCGC	5 cut(s)	225, 257, 737, 1497, 1584
BspANI	GGCC	2 cut(s)	211, 217
BspCNI	CTCAG	5 cut(s)	92, 292, 583, 1624, 1919
BspDI	ATCGAT	1 cut(s)	449
BspEI	TCCGGA	1 cut(s)	1772
BspLI	GGNNCC	4 cut(s)	23, 255, 1305, 1608
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	1 cut(s)	1073
BspPI	GGATC	3 cut(s)	40, 513, 1014
BspT107I	GGYRCC	3 cut(s)	21, 253, 1303
BsrBI	CCGCTC	1 cut(s)	1499
BsrGI	TGTACA	1 cut(s)	333
BsrI	ACTGG	4 cut(s)	294, 1137, 1932, 2123
BssECI	CCNNGG	2 cut(s)	206, 212
BssMI	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
BssNI	GRCGYC	3 cut(s)	254, 1967, 2067
BssSI	CACGAG	1 cut(s)	1895
Bst2BI	CACGAG	1 cut(s)	1895
Bst2UI	CCWGG	2 cut(s)	214, 1045
Bst4CI	ACNGT	5 cut(s)	875, 907, 1655, 1816, 1919
Bst6I	CTCTTC	2 cut(s)	267, 458
BstACI	GRCGYC	3 cut(s)	254, 1967, 2067
BstAPI	GCANNNNNTGC	2 cut(s)	935, 1981
BstAUI	TGTACA	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	541
BstC8I	GCNNGC	7 cut(s)	568, 572, 1074, 1342, 1729, 1788, 2071
BstF5I	GGATG	4 cut(s)	558, 1376, 1854, 1894
BstH2I	RGCGCY	2 cut(s)	257, 356
BstHHI	GCGC	5 cut(s)	256, 268, 355, 940, 1902
BstKTI	GATC	6 cut(s)	48, 107, 449, 508, 1009, 1950
BstMAI	GTCTC	1 cut(s)	1805
BstMBI	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
BstMWI	GCNNNNNNNGC	9 cut(s)	265, 284, 935, 1049, 1073, 1229, 1615, 1981, 2007
BstNI	CCWGG	2 cut(s)	214, 1045
BstNSI	RCATGY	4 cut(s)	1067, 1525, 1731, 1790
BstSCI	CCNGG	3 cut(s)	212, 1043, 2001
BstSFI	CTRYAG	3 cut(s)	759, 1144, 1512
BstV1I	GCAGC	5 cut(s)	721, 1356, 1516, 1663, 1666
BstV2I	GAAGAC	2 cut(s)	905, 1849
BstX2I	RGATCY	2 cut(s)	45, 104
BstXI	CCANNNNNNTGG	1 cut(s)	578
BstYI	RGATCY	2 cut(s)	45, 104
Bsu15I	ATCGAT	1 cut(s)	449
BsuRI	GGCC	2 cut(s)	211, 217
BsuTUI	ATCGAT	1 cut(s)	449
BtgZI	GCGATG	1 cut(s)	1976
BtrI	CACGTC	2 cut(s)	1175, 1847
BtsCI	GGATG	4 cut(s)	558, 1376, 1854, 1894
BtsI	GCAGTG	1 cut(s)	1970
BtsIMutI	CAGTG	5 cut(s)	871, 1130, 1821, 1924, 1970
BveI	ACCTGC	1 cut(s)	1073
Cac8I	GCNNGC	7 cut(s)	568, 572, 1074, 1342, 1729, 1788, 2071
CfoI	GCGC	5 cut(s)	256, 268, 355, 940, 1902
Cfr13I	GGNCC	3 cut(s)	40, 210, 216
ClaI	ATCGAT	1 cut(s)	449
CseI	GACGC	2 cut(s)	1975, 2075
Csp6I	GTAC	8 cut(s)	22, 121, 334, 408, 973, 1304, 1757, 1953
CspCI	CAANNNNNGTGG	2 cut(s)	1639, 1674
CviQI	GTAC	8 cut(s)	22, 121, 334, 408, 973, 1304, 1757, 1953
DinI	GGCGCC	1 cut(s)	255
DpnI	GATC	6 cut(s)	47, 106, 448, 507, 1008, 1949
DpnII	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
DrdI	GACNNNNNNGTC	1 cut(s)	1829
DriI	GACNNNNNGTC	2 cut(s)	703, 1545
DseDI	GACNNNNNNGTC	1 cut(s)	1829
Eam1104I	CTCTTC	2 cut(s)	267, 458
Eam1105I	GACNNNNNGTC	2 cut(s)	703, 1545
EarI	CTCTTC	2 cut(s)	267, 458
Ecl136II	GAGCTC	1 cut(s)	1594
Eco24I	GRGCYC	1 cut(s)	1596
Eco47I	GGWCC	1 cut(s)	40
Eco47III	AGCGCT	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	1594
Eco57I	CTGAAG	1 cut(s)	221
Eco72I	CACGTG	1 cut(s)	541
EcoICRI	GAGCTC	1 cut(s)	1594
EcoRI	GAATTC	1 cut(s)	598
EcoRII	CCWGG	2 cut(s)	212, 1043
EcoT22I	ATGCAT	1 cut(s)	1428
EcoT38I	GRGCYC	1 cut(s)	1596
EgeI	GGCGCC	1 cut(s)	255
EheI	GGCGCC	1 cut(s)	255
FaqI	GGGAC	3 cut(s)	764, 1978, 2078
FauI	CCCGC	1 cut(s)	232
FauNDI	CATATG	1 cut(s)	184
FbaI	TGATCA	1 cut(s)	1947
Fnu4HI	GCNGC	9 cut(s)	257, 735, 738, 1345, 1497, 1530, 1584, 1677, 1680
FokI	GGATG	4 cut(s)	565, 1383, 1841, 1901
FriOI	GRGCYC	1 cut(s)	1596
Fsp4HI	GCNGC	9 cut(s)	257, 735, 738, 1345, 1497, 1530, 1584, 1677, 1680
FspBI	CTAG	1 cut(s)	1088
GlaI	GCGC	5 cut(s)	255, 267, 354, 939, 1901
GluI	GCNGC	9 cut(s)	257, 735, 738, 1345, 1497, 1530, 1584, 1677, 1680
HaeII	RGCGCY	2 cut(s)	257, 356
HaeIII	GGCC	2 cut(s)	211, 217
HapII	CCGG	4 cut(s)	172, 1724, 1773, 2003
HgaI	GACGC	2 cut(s)	1975, 2075
HhaI	GCGC	5 cut(s)	256, 268, 355, 940, 1902
Hin1I	GRCGYC	3 cut(s)	254, 1967, 2067
Hin6I	GCGC	5 cut(s)	254, 266, 353, 938, 1900
HinP1I	GCGC	5 cut(s)	254, 266, 353, 938, 1900
HpaII	CCGG	4 cut(s)	172, 1724, 1773, 2003
HphI	GGTGA	3 cut(s)	436, 1268, 2050
Hpy166II	GTNNAC	2 cut(s)	1138, 1819
Hpy188I	TCNGA	7 cut(s)	82, 282, 315, 1363, 1614, 1692, 1960
Hpy188III	TCNNGA	6 cut(s)	165, 1773, 1834, 1880, 2059, 2089
Hpy8I	GTNNAC	2 cut(s)	1138, 1819
HpyAV	CCTTC	4 cut(s)	1152, 1663, 1695, 1699
HpyCH4III	ACNGT	5 cut(s)	875, 907, 1655, 1816, 1919
HpyCH4IV	ACGT	8 cut(s)	29, 52, 540, 1016, 1174, 1314, 1366, 1846
HpyF10VI	GCNNNNNNNGC	9 cut(s)	265, 284, 935, 1049, 1073, 1229, 1615, 1981, 2007
HpySE526I	ACGT	8 cut(s)	29, 52, 540, 1016, 1174, 1314, 1366, 1846
Hsp92I	GRCGYC	3 cut(s)	254, 1967, 2067
HspAI	GCGC	5 cut(s)	254, 266, 353, 938, 1900
KasI	GGCGCC	1 cut(s)	253
Kpn2I	TCCGGA	1 cut(s)	1772
KpnI	GGTACC	2 cut(s)	25, 1307
Ksp22I	TGATCA	1 cut(s)	1947
Kzo9I	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
LmnI	GCTCC	3 cut(s)	1504, 1606, 1641
Lsp1109I	GCAGC	5 cut(s)	721, 1356, 1516, 1663, 1666
MaeI	CTAG	1 cut(s)	1088
MaeII	ACGT	8 cut(s)	29, 52, 540, 1016, 1174, 1314, 1366, 1846
MaeIII	GTNAC	5 cut(s)	695, 799, 1315, 1850, 2038
MalI	GATC	6 cut(s)	47, 106, 448, 507, 1008, 1949
MbiI	CCGCTC	1 cut(s)	1499
MboI	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
MflI	RGATCY	2 cut(s)	45, 104
MhlI	GDGCHC	2 cut(s)	1596, 1638
Mly113I	GGCGCC	1 cut(s)	254
MlyI	GAGTC	2 cut(s)	713, 1687
MmeI	TCCRAC	5 cut(s)	18, 73, 483, 1089, 1715
Mph1103I	ATGCAT	1 cut(s)	1428
MroI	TCCGGA	1 cut(s)	1772
MseI	TTAA	5 cut(s)	17, 1410, 1506, 1746, 2027
MspA1I	CMGCKG	2 cut(s)	199, 574
MspI	CCGG	4 cut(s)	172, 1724, 1773, 2003
MspR9I	CCNGG	3 cut(s)	214, 1045, 2003
Mva1269I	GAATGC	3 cut(s)	775, 1225, 1722
MvaI	CCWGG	2 cut(s)	214, 1045
MwoI	GCNNNNNNNGC	9 cut(s)	265, 284, 935, 1049, 1073, 1229, 1615, 1981, 2007
NarI	GGCGCC	1 cut(s)	254
NciI	CCSGG	1 cut(s)	2003
NdeI	CATATG	1 cut(s)	184
NdeII	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
NlaIV	GGNNCC	4 cut(s)	23, 255, 1305, 1608
NmeAIII	GCCGAG	1 cut(s)	187
NmuCI	GTSAC	3 cut(s)	695, 799, 2038
NsiI	ATGCAT	1 cut(s)	1428
NspI	RCATGY	4 cut(s)	1067, 1525, 1731, 1790
PaeI	GCATGC	2 cut(s)	1731, 1790
PciI	ACATGT	1 cut(s)	1521
PcsI	WCGNNNNNNNCGW	1 cut(s)	614
PctI	GAATGC	3 cut(s)	775, 1225, 1722
PfeI	GAWTC	9 cut(s)	7, 83, 168, 377, 989, 1035, 1385, 1551, 2076
PkrI	GCNGC	9 cut(s)	258, 736, 739, 1346, 1498, 1531, 1585, 1678, 1681
PleI	GAGTC	2 cut(s)	712, 1687
PluTI	GGCGCC	1 cut(s)	257
PmaCI	CACGTG	1 cut(s)	541
PmlI	CACGTG	1 cut(s)	541
PpsI	GAGTC	2 cut(s)	712, 1687
Ppu21I	YACGTR	1 cut(s)	541
PscI	ACATGT	1 cut(s)	1521
PsiI	TTATAA	1 cut(s)	1031
Psp124BI	GAGCTC	1 cut(s)	1596
Psp1406I	AACGTT	1 cut(s)	29
Psp6I	CCWGG	2 cut(s)	212, 1043
PspCI	CACGTG	1 cut(s)	541
PspGI	CCWGG	2 cut(s)	212, 1043
PspN4I	GGNNCC	4 cut(s)	23, 255, 1305, 1608
PspPI	GGNCC	3 cut(s)	40, 210, 216
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	45, 104
PvuII	CAGCTG	2 cut(s)	199, 574
RsaI	GTAC	8 cut(s)	23, 122, 335, 409, 974, 1305, 1758, 1954
RsaNI	GTAC	8 cut(s)	22, 121, 334, 408, 973, 1304, 1757, 1953
SacI	GAGCTC	1 cut(s)	1596
SaqAI	TTAA	5 cut(s)	17, 1410, 1506, 1746, 2027
SatI	GCNGC	9 cut(s)	257, 735, 738, 1345, 1497, 1530, 1584, 1677, 1680
Sau3AI	GATC	6 cut(s)	45, 104, 446, 505, 1006, 1947
Sau96I	GGNCC	3 cut(s)	40, 210, 216
ScaI	AGTACT	1 cut(s)	409
SchI	GAGTC	2 cut(s)	713, 1687
ScrFI	CCNGG	3 cut(s)	214, 1045, 2003
SduI	GDGCHC	2 cut(s)	1596, 1638
SfcI	CTRYAG	3 cut(s)	759, 1144, 1512
SfoI	GGCGCC	1 cut(s)	255
SinI	GGWCC	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	442, 1289
SmoI	CTYRAG	2 cut(s)	442, 1289
SphI	GCATGC	2 cut(s)	1731, 1790
SsiI	CCGC	5 cut(s)	225, 257, 737, 1497, 1584
SspDI	GGCGCC	1 cut(s)	253
SspMI	CTAG	1 cut(s)	1088
SstI	GAGCTC	1 cut(s)	1596
StyD4I	CCNGG	3 cut(s)	212, 1043, 2001
TaaI	ACNGT	5 cut(s)	875, 907, 1655, 1816, 1919
TaiI	ACGT	8 cut(s)	32, 55, 543, 1019, 1177, 1317, 1369, 1849
TaqI	TCGA	4 cut(s)	234, 449, 707, 1549
TatI	WGTACW	4 cut(s)	333, 407, 972, 1952
TauI	GCSGC	4 cut(s)	259, 740, 1499, 1586
TfiI	GAWTC	9 cut(s)	7, 83, 168, 377, 989, 1035, 1385, 1551, 2076
Tru1I	TTAA	5 cut(s)	17, 1410, 1506, 1746, 2027
Tru9I	TTAA	5 cut(s)	17, 1410, 1506, 1746, 2027
TscAI	CASTG	5 cut(s)	878, 1137, 1821, 1924, 1977
TseFI	GTSAC	3 cut(s)	695, 799, 2038
TseI	GCWGC	5 cut(s)	734, 1344, 1529, 1676, 1679
Tsp45I	GTSAC	3 cut(s)	695, 799, 2038
TspDTI	ATGAA	9 cut(s)	171, 408, 932, 1044, 1488, 1572, 1757, 1794, 1905
TspGWI	ACGGA	1 cut(s)	1847
TspRI	CASTG	5 cut(s)	878, 1137, 1821, 1924, 1977
VpaK11BI	GGWCC	1 cut(s)	40
XapI	RAATTY	3 cut(s)	598, 1377, 1561
XceI	RCATGY	4 cut(s)	1067, 1525, 1731, 1790
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2090
XspI	CTAG	1 cut(s)	1088
ZrmI	AGTACT	1 cut(s)	409
Zsp2I	ATGCAT	1 cut(s)	1428

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.