Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Forward (+)

25183461 .. 25186202

Gene Structure 2742 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG155600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2127 bp

ATGGAGGTTCCTCTGTTAAGGTACCAAAGCCTAGCGTTGGACCAGATTCAATGTAGCATTAGCTTCCCTTTGTCATTCTCAGATTCCAAGTTTTCCAAGCGGAGATCTTTGTTTTCTGGCTACTCTTTTTCCCTTAATAGACCAAAATGGAGGAACCCTTTTTCCCAAATTAGGTGTTGTTCTTATGTGGAGCAACAGCTGAAGCCCCGGCCCAGGCCCATACCCGCCAAAATTGAGGTTGAGGAGGAACCAAAGGTCGCACCTTTGGAACTCGAAGAGGCCCAGATTGCAGTACCCAGTTCTGGGATTTGTAGTCAGATTGAGAAGTTGGTTTTGTATAAGAGGTATAGGGAAGCACTTGAAATGTTTGAGTTTTTGGAATCTAGAGGTGGGTATGAAGTGGGTGGTAGTACTTATGATGCTTTAGTGAGTGCTTGTATTAGCTTGAAATCGATTAGAGGAGTGAAGAGGGTGTTTGGTTATATGATTGGTAATGGGTTTGAGTTGGATCAGTACATGAGGAACAGGGTTTTGCTTATGCATGTGAAATGTGGGATGATGATTGATGCACGCCACCTGTTTGAGGAAATGCCTGAGAGAAATTCGGTTTCGTGGAACACGATAATTGGGGGTCTTGTGGATTGTGGAGAGTTCGTGGAGGCATTCGGGTTGTTTTTGGATATGTGGGAGGAGTTTTCTGATGGGGAGTCGAGGATATTTGCCACAATGATTCGGGCTTCGGCTGGGTTGGGACTCATTTCTGCAGGGAGACAGTTTCATTCGTGTTGTGTGAAGATGGGTGTGGCGGCTGATATTTTCGTGTCTTGTGCGTTGATTGATATGTATAGCAAGTGTGGGAGCATTGATGACGCTCACTGTGTTTTTGATGAGATGCCGAAGAAGACAACTGTAGGATGGAATACCATTATAGCGGGTTATGCACTTCATGGTTATAGTGAGGAGGCTTTGAGTATGTACTATGATATGCGTGATTCTGGTGTGCCGATGGACCATTTTACGTTTTCCATGATCATAAGAACATGTGCAAGGTTGGCGTCGTTAGAACATGCAAAGCAAGCACATGCAGGTCTAGTTCGTCATGGTTTTGGGTTGGATATAGTGGCAAACACATCGCTCGTGGACTTCTATAGCAAATGGGGGAGGATAGAAGATGCTCGGCATGTTTTTGATCAGATGCCTAACAAGAATGTCATATCTTGGAATGCCTTGATTGCTGGATATGGTAACCATGGTCGGGGTGATGAGGCTGTTGAGATGTTTGAGAAGATGCTTCAGGAAGGAATGGTACCCAACCATGTTACTTTTCTTGCTGTCTTGTCTGCTTGCAGTCGTTCAGGTTTATCAGAACTTGGATGGGAGATTTTTGAATCAATGGGCAGGGATTACAAGATTAAGCCCCGTGCTATGCATTATGCTTGTATGATTGAATTGCTAGGACAAGAGGGCAATTTAGATGAAGCGTTTGCACTGATAAGAACTGCTCCCTTAAAGCCTACAGCAAACATGTGGGCTGCTCTGCTGACAGCTTGTCGAATCCATGAGAATTTAGAGCTTGGCAAAATTGCAGCCGAAGAGCTCTATGGGATGGAGCCTGAGAAGCTAAGTAATTATGTTGTGCTCCTGAATATATATAACAGTTGTGGAAAGTTGAAGGAAGCTGCTGCTGTTGTTCAGACTCTAAGAAGAAAGGGTTTGAGAATGCTTCCGGCATGCAGTTGGATTGAAATTAAGAAACAGGTACATATTTTTCATTCCGGAGATGAAAGGCATGCCCAAACAAGAGAGATTTACGAGAAAGTGGACGAATTGATGGTCAGGATTAGGAGACGTGGTTACATCCCTGACAAGAAGCATCTACTTCCTGATGTGGATGAACACGAGCGCATCTCAGCTTACCACAGTGAGAAACTGGCTATAGCTTACGGCTTGATAAGTATGTCAGATGGGACGCCACTGCAAATTGTGCAAGGCCATCGCATTTGCGGAGACTGCCATTCCGCAATCAAGTTAATAGCTAAGGTGACTGAACGGGAAATTGTAGTGAGGGACGCCAGCAGATTCCACCACTTCAAGAATGGGAGTTGTTCTTGTGGGAATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

708

Amino Acids

80.06

Weight (kDa)

6.57

Isoelectric Point (pI)

46.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	302 - 350	1.1e-11	PPR repeat family
PPR	PF01535	306 - 334	2.5e-06	PPR repeat
PPR_2	PF13041	402 - 450	6.4e-13	PPR repeat family
PPR_1	PF12854	403 - 430	6.2e-06	PPR repeat
PPR_3	PF13812	403 - 449	9.4e-06	Pentatricopeptide repeat domain
PPR	PF01535	405 - 434	7.5e-09	PPR repeat
E_motif	PF20431	520 - 582	2.5e-11	E motif
DYW_deaminase	PF14432	618 - 708	8.7e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1076
Acc65I	GGTACC	2 cut(s)	21, 1306
AccB1I	GGYRCC	2 cut(s)	21, 1306
AccIII	TCCGGA	1 cut(s)	1775
AciI	CCGC	6 cut(s)	100, 225, 806, 932, 2004, 2019
AclWI	GGATC	1 cut(s)	516
AcsI	RAATTY	2 cut(s)	601, 1564
AcuI	CTGAAG	2 cut(s)	221, 1277
AcyI	GRCGYC	3 cut(s)	1055, 1970, 2070
AfaI	GTAC	7 cut(s)	23, 294, 412, 515, 977, 1308, 1761
AfiI	CCNNNNNNNGG	7 cut(s)	37, 171, 213, 302, 303, 583, 1255
AflIII	ACRYGT	2 cut(s)	1040, 1524
AgsI	TTSAA	8 cut(s)	50, 362, 448, 1388, 1448, 1672, 1745, 2092
AhdI	GACNNNNNGTC	1 cut(s)	1548
AjiI	CACGTC	1 cut(s)	1850
AjnI	CCWGG	1 cut(s)	212
AloI	GAACNNNNNNTCC	2 cut(s)	146, 178
Alw21I	GWGCWC	2 cut(s)	1599, 1641
Alw26I	GTCTC	3 cut(s)	763, 1840, 2001
AlwI	GGATC	1 cut(s)	516
Aor13HI	TCCGGA	1 cut(s)	1775
AoxI	GGCC	4 cut(s)	209, 215, 279, 1990
ApeKI	GCWGC	4 cut(s)	1532, 1586, 1679, 1682
ApoI	RAATTY	2 cut(s)	601, 1564
ArsI	GACNNNNNNTTYG	2 cut(s)	1818, 1850
Asp718I	GGTACC	2 cut(s)	21, 1306
AspLEI	GCGC	1 cut(s)	1905
AspS9I	GGNCC	5 cut(s)	40, 210, 216, 280, 1009
AsuC2I	CCSGG	1 cut(s)	208
AsuHPI	GGTGA	2 cut(s)	1271, 2053
AvaII	GGWCC	2 cut(s)	40, 1009
BanI	GGYRCC	2 cut(s)	21, 1306
BanII	GRGCYC	1 cut(s)	1599
BarI	GAAGNNNNNNTAC	2 cut(s)	1290, 1322
BauI	CACGAG	2 cut(s)	1136, 1898
BbsI	GAAGAC	1 cut(s)	908
Bbv12I	GWGCWC	2 cut(s)	1599, 1641
BbvI	GCAGC	4 cut(s)	1519, 1598, 1666, 1669
BccI	CCATC	9 cut(s)	695, 790, 909, 1000, 1368, 1600, 1825, 1958, 2001
BceAI	ACGGC	1 cut(s)	1960
BcgI	CGANNNNNNTGC	4 cut(s)	1113, 1147, 1976, 2010
BciT130I	CCWGG	1 cut(s)	214
BclI	TGATCA	2 cut(s)	1029, 1189
BcnI	CCSGG	1 cut(s)	208
BcoDI	GTCTC	3 cut(s)	763, 1840, 2001
BfaI	CTAG	4 cut(s)	32, 384, 1091, 1454
BfmI	CTRYAG	5 cut(s)	762, 909, 1147, 1515, 1935
BfuAI	ACCTGC	1 cut(s)	1076
BglII	AGATCT	1 cut(s)	104
BisI	GCNGC	5 cut(s)	807, 1533, 1587, 1680, 1683
BlsI	GCNGC	5 cut(s)	808, 1534, 1588, 1681, 1684
BmcAI	AGTACT	1 cut(s)	412
Bme1390I	CCNGG	2 cut(s)	208, 214
Bme18I	GGWCC	2 cut(s)	40, 1009
BmeRI	GACNNNNNGTC	1 cut(s)	1548
BmgBI	CACGTC	1 cut(s)	1850
BmgT120I	GGNCC	5 cut(s)	40, 210, 216, 280, 1009
BmiI	GGNNCC	6 cut(s)	9, 23, 155, 249, 1308, 1611
BmrFI	CCNGG	2 cut(s)	208, 214
BmrI	ACTGGG	1 cut(s)	291
BmsI	GCATC	8 cut(s)	409, 556, 882, 1162, 1185, 1278, 1882, 1914
BmuI	ACTGGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	908
BplI	GAGNNNNNCTC	2 cut(s)	1892, 1924
Bpu10I	CCTNAGC	1 cut(s)	2037
BpuMI	CCSGG	1 cut(s)	208
Bsa29I	ATCGAT	1 cut(s)	452
BsaHI	GRCGYC	3 cut(s)	1055, 1970, 2070
BsaJI	CCNNGG	3 cut(s)	206, 212, 1249
BsaWI	WCCGGW	1 cut(s)	1775
BsaXI	ACNNNNNCTCC	4 cut(s)	639, 669, 1837, 1867
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 171, 213, 302, 303, 583, 1255
Bse1I	ACTGG	3 cut(s)	297, 1935, 2126
BseAI	TCCGGA	1 cut(s)	1775
BseBI	CCWGG	1 cut(s)	214
BseCI	ATCGAT	1 cut(s)	452
BseDI	CCNNGG	3 cut(s)	206, 212, 1249
BseGI	GGATG	6 cut(s)	561, 920, 1379, 1611, 1857, 1897
BseLI	CCNNNNNNNGG	7 cut(s)	37, 171, 213, 302, 303, 583, 1255
BseMII	CTCAG	4 cut(s)	93, 585, 1605, 1923
BseNI	ACTGG	3 cut(s)	297, 1935, 2126
BseRI	GAGGAG	4 cut(s)	257, 474, 704, 974
BseXI	GCAGC	4 cut(s)	1519, 1598, 1666, 1669
BseYI	CCCAGC	1 cut(s)	743
BshFI	GGCC	4 cut(s)	211, 217, 281, 1992
BshNI	GGYRCC	2 cut(s)	21, 1306
BshVI	ATCGAT	1 cut(s)	452
BsiHKAI	GWGCWC	2 cut(s)	1599, 1641
BsiSI	CCGG	3 cut(s)	208, 1727, 1776
BslFI	GGGAC	3 cut(s)	765, 1981, 2081
BslI	CCNNNNNNNGG	7 cut(s)	37, 171, 213, 302, 303, 583, 1255
BsmAI	GTCTC	3 cut(s)	763, 1840, 2001
BsmBI	CGTCTC	1 cut(s)	1840
BsmFI	GGGAC	3 cut(s)	765, 1981, 2081
BsmI	GAATGC	3 cut(s)	662, 1228, 1725
BsnI	GGCC	4 cut(s)	211, 217, 281, 1992
Bsp1286I	GDGCHC	2 cut(s)	1599, 1641
Bsp13I	TCCGGA	1 cut(s)	1775
Bsp143I	GATC	4 cut(s)	104, 508, 1029, 1189
Bsp19I	CCATGG	1 cut(s)	1249
BspACI	CCGC	6 cut(s)	100, 225, 806, 932, 2004, 2019
BspANI	GGCC	4 cut(s)	211, 217, 281, 1992
BspCNI	CTCAG	4 cut(s)	92, 586, 1606, 1922
BspDI	ATCGAT	1 cut(s)	452
BspEI	TCCGGA	1 cut(s)	1775
BspLI	GGNNCC	6 cut(s)	9, 23, 155, 249, 1308, 1611
BspMAI	CTGCAG	1 cut(s)	766
BspMI	ACCTGC	1 cut(s)	1076
BspPI	GGATC	1 cut(s)	516
BspQI	GCTCTTC	1 cut(s)	1587
BspT107I	GGYRCC	2 cut(s)	21, 1306
BsrI	ACTGG	3 cut(s)	297, 1935, 2126
BssECI	CCNNGG	3 cut(s)	206, 212, 1249
BssMI	GATC	4 cut(s)	104, 508, 1029, 1189
BssNI	GRCGYC	3 cut(s)	1055, 1970, 2070
BssSI	CACGAG	2 cut(s)	1136, 1898
BssT1I	CCWWGG	1 cut(s)	1249
Bst2BI	CACGAG	2 cut(s)	1136, 1898
Bst2UI	CCWGG	1 cut(s)	214
Bst4CI	ACNGT	5 cut(s)	774, 878, 910, 1658, 1922
Bst6I	CTCTTC	3 cut(s)	270, 461, 1587
BstACI	GRCGYC	3 cut(s)	1055, 1970, 2070
BstAPI	GCANNNNNTGC	1 cut(s)	1984
BstC8I	GCNNGC	6 cut(s)	571, 1077, 1345, 1732, 1791, 2074
BstDEI	CTNAG	7 cut(s)	79, 594, 1614, 1622, 1700, 1909, 2037
BstDSI	CCRYGG	1 cut(s)	1249
BstEII	GGTNACC	1 cut(s)	1244
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstF5I	GGATG	6 cut(s)	561, 920, 1379, 1611, 1857, 1897
BstHHI	GCGC	1 cut(s)	1905
BstKTI	GATC	4 cut(s)	107, 511, 1032, 1192
BstMAI	GTCTC	3 cut(s)	763, 1840, 2001
BstMBI	GATC	4 cut(s)	104, 508, 1029, 1189
BstMWI	GCNNNNNNNGC	8 cut(s)	287, 938, 1052, 1076, 1232, 1618, 1984, 2010
BstNI	CCWGG	1 cut(s)	214
BstNSI	RCATGY	8 cut(s)	545, 1044, 1070, 1085, 1184, 1528, 1734, 1793
BstPI	GGTNACC	1 cut(s)	1244
BstSCI	CCNGG	2 cut(s)	206, 212
BstSFI	CTRYAG	5 cut(s)	762, 909, 1147, 1515, 1935
BstV1I	GCAGC	4 cut(s)	1519, 1598, 1666, 1669
BstV2I	GAAGAC	1 cut(s)	908
BstX2I	RGATCY	1 cut(s)	104
BstYI	RGATCY	1 cut(s)	104
Bsu15I	ATCGAT	1 cut(s)	452
BsuRI	GGCC	4 cut(s)	211, 217, 281, 1992
BsuTUI	ATCGAT	1 cut(s)	452
BtgI	CCRYGG	1 cut(s)	1249
BtgZI	GCGATG	2 cut(s)	1116, 1979
BtrI	CACGTC	1 cut(s)	1850
BtsCI	GGATG	6 cut(s)	561, 920, 1379, 1611, 1857, 1897
BtsI	GCAGTG	1 cut(s)	1973
BtsIMutI	CAGTG	4 cut(s)	874, 1487, 1927, 1973
BveI	ACCTGC	1 cut(s)	1076
Cac8I	GCNNGC	6 cut(s)	571, 1077, 1345, 1732, 1791, 2074
CfoI	GCGC	1 cut(s)	1905
Cfr13I	GGNCC	5 cut(s)	40, 210, 216, 280, 1009
ClaI	ATCGAT	1 cut(s)	452
CseI	GACGC	4 cut(s)	878, 1044, 1978, 2078
Csp6I	GTAC	7 cut(s)	22, 293, 411, 514, 976, 1307, 1760
CviQI	GTAC	7 cut(s)	22, 293, 411, 514, 976, 1307, 1760
DdeI	CTNAG	7 cut(s)	79, 594, 1614, 1622, 1700, 1909, 2037
DpnI	GATC	4 cut(s)	106, 510, 1031, 1191
DpnII	GATC	4 cut(s)	104, 508, 1029, 1189
DriI	GACNNNNNGTC	1 cut(s)	1548
Eam1104I	CTCTTC	3 cut(s)	270, 461, 1587
Eam1105I	GACNNNNNGTC	1 cut(s)	1548
EarI	CTCTTC	3 cut(s)	270, 461, 1587
Ecl136II	GAGCTC	1 cut(s)	1597
Eco130I	CCWWGG	1 cut(s)	1249
Eco24I	GRGCYC	1 cut(s)	1599
Eco47I	GGWCC	2 cut(s)	40, 1009
Eco53kI	GAGCTC	1 cut(s)	1597
Eco57I	CTGAAG	2 cut(s)	221, 1277
Eco91I	GGTNACC	1 cut(s)	1244
EcoICRI	GAGCTC	1 cut(s)	1597
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	1244
EcoRII	CCWGG	1 cut(s)	212
EcoT14I	CCWWGG	1 cut(s)	1249
EcoT22I	ATGCAT	2 cut(s)	543, 1431
EcoT38I	GRGCYC	1 cut(s)	1599
ErhI	CCWWGG	1 cut(s)	1249
Esp3I	CGTCTC	1 cut(s)	1840
FaqI	GGGAC	3 cut(s)	765, 1981, 2081
FauI	CCCGC	2 cut(s)	232, 925
FbaI	TGATCA	2 cut(s)	1029, 1189
Fnu4HI	GCNGC	5 cut(s)	807, 1533, 1587, 1680, 1683
FokI	GGATG	6 cut(s)	568, 927, 1386, 1618, 1844, 1904
FriOI	GRGCYC	1 cut(s)	1599
Fsp4HI	GCNGC	5 cut(s)	807, 1533, 1587, 1680, 1683
FspBI	CTAG	4 cut(s)	32, 384, 1091, 1454
GlaI	GCGC	1 cut(s)	1904
GluI	GCNGC	5 cut(s)	807, 1533, 1587, 1680, 1683
GsaI	CCCAGC	1 cut(s)	747
HaeIII	GGCC	4 cut(s)	211, 217, 281, 1992
HapII	CCGG	3 cut(s)	208, 1727, 1776
HgaI	GACGC	4 cut(s)	878, 1044, 1978, 2078
HhaI	GCGC	1 cut(s)	1905
Hin1I	GRCGYC	3 cut(s)	1055, 1970, 2070
Hin6I	GCGC	1 cut(s)	1903
HinP1I	GCGC	1 cut(s)	1903
HpaII	CCGG	3 cut(s)	208, 1727, 1776
HphI	GGTGA	2 cut(s)	1271, 2053
Hpy166II	GTNNAC	2 cut(s)	1141, 1822
Hpy188I	TCNGA	7 cut(s)	82, 318, 700, 1194, 1366, 1695, 1963
Hpy188III	TCNNGA	7 cut(s)	384, 1295, 1642, 1776, 1837, 1883, 2092
Hpy8I	GTNNAC	2 cut(s)	1141, 1822
Hpy99I	CGWCG	1 cut(s)	1060
HpyAV	CCTTC	2 cut(s)	1292, 1666
HpyCH4III	ACNGT	5 cut(s)	774, 878, 910, 1658, 1922
HpyCH4IV	ACGT	2 cut(s)	1019, 1849
HpyF10VI	GCNNNNNNNGC	8 cut(s)	287, 938, 1052, 1076, 1232, 1618, 1984, 2010
HpyF3I	CTNAG	7 cut(s)	79, 594, 1614, 1622, 1700, 1909, 2037
HpySE526I	ACGT	2 cut(s)	1019, 1849
Hsp92I	GRCGYC	3 cut(s)	1055, 1970, 2070
HspAI	GCGC	1 cut(s)	1903
Kpn2I	TCCGGA	1 cut(s)	1775
KpnI	GGTACC	2 cut(s)	25, 1310
Ksp22I	TGATCA	2 cut(s)	1029, 1189
Kzo9I	GATC	4 cut(s)	104, 508, 1029, 1189
LguI	GCTCTTC	1 cut(s)	1587
LmnI	GCTCC	5 cut(s)	190, 858, 1507, 1609, 1644
Lsp1109I	GCAGC	4 cut(s)	1519, 1598, 1666, 1669
LweI	GCATC	8 cut(s)	409, 556, 882, 1162, 1185, 1278, 1882, 1914
MaeI	CTAG	4 cut(s)	32, 384, 1091, 1454
MaeII	ACGT	2 cut(s)	1019, 1849
MaeIII	GTNAC	4 cut(s)	1244, 1318, 1853, 2041
MalI	GATC	4 cut(s)	106, 510, 1031, 1191
MboI	GATC	4 cut(s)	104, 508, 1029, 1189
MboII	GAAGA	9 cut(s)	287, 478, 805, 910, 913, 1181, 1297, 1604, 1716
MflI	RGATCY	1 cut(s)	104
MhlI	GDGCHC	2 cut(s)	1599, 1641
MlyI	GAGTC	3 cut(s)	716, 747, 1690
MmeI	TCCRAC	4 cut(s)	18, 486, 1092, 1718
Mph1103I	ATGCAT	2 cut(s)	543, 1431
MroI	TCCGGA	1 cut(s)	1775
MseI	TTAA	6 cut(s)	17, 135, 1413, 1508, 1749, 2030
MspA1I	CMGCKG	1 cut(s)	199
MspI	CCGG	3 cut(s)	208, 1727, 1776
MspR9I	CCNGG	2 cut(s)	208, 214
Mva1269I	GAATGC	3 cut(s)	662, 1228, 1725
MvaI	CCWGG	1 cut(s)	214
MwoI	GCNNNNNNNGC	8 cut(s)	287, 938, 1052, 1076, 1232, 1618, 1984, 2010
NciI	CCSGG	1 cut(s)	208
NcoI	CCATGG	1 cut(s)	1249
NdeII	GATC	4 cut(s)	104, 508, 1029, 1189
NlaIV	GGNNCC	6 cut(s)	9, 23, 155, 249, 1308, 1611
NmeAIII	GCCGAG	1 cut(s)	1156
NmuCI	GTSAC	1 cut(s)	2041
NsiI	ATGCAT	2 cut(s)	543, 1431
NspI	RCATGY	8 cut(s)	545, 1044, 1070, 1085, 1184, 1528, 1734, 1793
PaeI	GCATGC	2 cut(s)	1734, 1793
PciI	ACATGT	2 cut(s)	1040, 1524
PciSI	GCTCTTC	1 cut(s)	1587
PcsI	WCGNNNNNNNCGW	1 cut(s)	617
PctI	GAATGC	3 cut(s)	662, 1228, 1725
PfeI	GAWTC	8 cut(s)	46, 83, 380, 730, 992, 1388, 1554, 2079
PkrI	GCNGC	5 cut(s)	808, 1534, 1588, 1681, 1684
PleI	GAGTC	3 cut(s)	715, 747, 1690
PpsI	GAGTC	3 cut(s)	715, 747, 1690
PscI	ACATGT	2 cut(s)	1040, 1524
Psp124BI	GAGCTC	1 cut(s)	1599
Psp6I	CCWGG	1 cut(s)	212
PspEI	GGTNACC	1 cut(s)	1244
PspFI	CCCAGC	1 cut(s)	743
PspGI	CCWGG	1 cut(s)	212
PspN4I	GGNNCC	6 cut(s)	9, 23, 155, 249, 1308, 1611
PspPI	GGNCC	5 cut(s)	40, 210, 216, 280, 1009
PstI	CTGCAG	1 cut(s)	766
PsuI	RGATCY	1 cut(s)	104
PvuII	CAGCTG	1 cut(s)	199
RsaI	GTAC	7 cut(s)	23, 294, 412, 515, 977, 1308, 1761
RsaNI	GTAC	7 cut(s)	22, 293, 411, 514, 976, 1307, 1760
SacI	GAGCTC	1 cut(s)	1599
SapI	GCTCTTC	1 cut(s)	1587
SaqAI	TTAA	6 cut(s)	17, 135, 1413, 1508, 1749, 2030
SatI	GCNGC	5 cut(s)	807, 1533, 1587, 1680, 1683
Sau3AI	GATC	4 cut(s)	104, 508, 1029, 1189
Sau96I	GGNCC	5 cut(s)	40, 210, 216, 280, 1009
ScaI	AGTACT	1 cut(s)	412
SchI	GAGTC	3 cut(s)	716, 747, 1690
ScrFI	CCNGG	2 cut(s)	208, 214
SduI	GDGCHC	2 cut(s)	1599, 1641
SfaNI	GCATC	8 cut(s)	409, 556, 882, 1162, 1185, 1278, 1882, 1914
SfcI	CTRYAG	5 cut(s)	762, 909, 1147, 1515, 1935
SinI	GGWCC	2 cut(s)	40, 1009
SphI	GCATGC	2 cut(s)	1734, 1793
SsiI	CCGC	6 cut(s)	100, 225, 806, 932, 2004, 2019
SspMI	CTAG	4 cut(s)	32, 384, 1091, 1454
SstI	GAGCTC	1 cut(s)	1599
StyD4I	CCNGG	2 cut(s)	206, 212
StyI	CCWWGG	1 cut(s)	1249
TaaI	ACNGT	5 cut(s)	774, 878, 910, 1658, 1922
TaiI	ACGT	2 cut(s)	1022, 1852
TaqI	TCGA	4 cut(s)	273, 452, 710, 1552
TatI	WGTACW	3 cut(s)	410, 513, 975
TauI	GCSGC	1 cut(s)	809
TfiI	GAWTC	8 cut(s)	46, 83, 380, 730, 992, 1388, 1554, 2079
Tru1I	TTAA	6 cut(s)	17, 135, 1413, 1508, 1749, 2030
Tru9I	TTAA	6 cut(s)	17, 135, 1413, 1508, 1749, 2030
TscAI	CASTG	4 cut(s)	881, 1494, 1927, 1980
TseFI	GTSAC	1 cut(s)	2041
TseI	GCWGC	4 cut(s)	1532, 1586, 1679, 1682
Tsp45I	GTSAC	1 cut(s)	2041
TspDTI	ATGAA	7 cut(s)	411, 767, 935, 1491, 1760, 1797, 1908
TspRI	CASTG	4 cut(s)	881, 1494, 1927, 1980
VpaK11BI	GGWCC	2 cut(s)	40, 1009
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	2 cut(s)	601, 1564
XbaI	TCTAGA	1 cut(s)	383
XceI	RCATGY	8 cut(s)	545, 1044, 1070, 1085, 1184, 1528, 1734, 1793
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2093
XspI	CTAG	4 cut(s)	32, 384, 1091, 1454
ZrmI	AGTACT	1 cut(s)	412
Zsp2I	ATGCAT	2 cut(s)	543, 1431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.