Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Forward (+)

66243107 .. 66252104

Gene Structure 8998 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0532200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 918 bp

ATGAACGACCTGCTTACGGATTCGTTTGTCAGTGAGGCAAGTGCTCAGCCTTCCGGAACAAATGATATCGAAATGGGAAGGCCAATTCCCCGCAGCGTGTCTGATGGCGGAATGGATAGTTTCAACAAGCAGATCCAAGAGGTTGAGAAACAGGTGGAAAAGCTCTCCGGGCTTCTTAAAAAACTTAAGGATGCGAATGAGGAGTCGAAGGCTGTTACAAAAGCATCTGCCATGAAAGCAATCAAAAAGCGGATGGAAAAAGATATTGATGAAGTGGGAAAGATTGCCCGTGGTGTCAAAGGAAAACTAGAAGCAATAAGCAAAGATAACTTAGCCAACCGACAGAAGCCTGGATGTGAGAAGGGAACAGGTGTTGACAGATCAAGGATGAACATGACAAATTCATTGACGAAAAAGTTTAGGGAGATAATGATCGAATTTCAGACCCTTAGACAAAGAATCCAAGATGAATATCGTGAGGTTGTGGAGAGAAGAGTCATTACAGTTACAGGAACTAGACCAGATGAAGAGACAATTGACAATCTAATAGAAACTGGAAATAGTGAGCAAATATTCCAGAAGGCAGTCCAAGAACAGGGACGAGGACAGGTACTAAATACTTTGGAAGAAATTCAAGAGAGGCATGACACCGTAAAAGAAATTGAGAAAAAGCTTCTTGACTTGCATCAGATCTACCTCGATATGGCAGTCTTGGTTGATGCTCAAGGAGAGGTTTTAGATAACATTGAAACTCAGGTGACAAATGCAGTGGACCATGTACAATCAGGGACAGATGCTCTACACACTGCAAAGAGCTTGCAAAAGAAGTCAAGAAAATGCATGATCATTTCCATGGTCTTGCTCTTGATCATTGCTCTCATTATTGTCCTCTCTATTCTCAAGCCATGGAAGAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

305

Amino Acids

34.33

Weight (kDa)

6.94

Isoelectric Point (pI)

34.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Syntaxin	PF00804	37 - 196	1.4e-51	Syntaxin
SNARE	PF05739	244 - 296	1.2e-14	SNARE domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	18
AccIII	TCCGGA	1 cut(s)	53
AciI	CCGC	3 cut(s)	91, 108, 250
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	3 cut(s)	400, 437, 630
AfaI	GTAC	2 cut(s)	612, 780
AfiI	CCNNNNNNNGG	3 cut(s)	16, 595, 703
AflII	CTTAAG	1 cut(s)	185
AgsI	TTSAA	3 cut(s)	124, 635, 749
AjnI	CCWGG	1 cut(s)	349
AluBI	AGCT	3 cut(s)	163, 673, 816
AluI	AGCT	3 cut(s)	163, 673, 816
Alw21I	GWGCWC	1 cut(s)	46
Alw26I	GTCTC	1 cut(s)	524
AlwI	GGATC	1 cut(s)	127
Aor13HI	TCCGGA	1 cut(s)	53
AoxI	GGCC	1 cut(s)	80
ApeKI	GCWGC	1 cut(s)	93
ApoI	RAATTY	3 cut(s)	400, 437, 630
ArsI	GACNNNNNNTTYG	2 cut(s)	188, 220
Asp700I	GAANNNNTTC	1 cut(s)	630
AspS9I	GGNCC	1 cut(s)	772
AsuC2I	CCSGG	1 cut(s)	169
AsuHPI	GGTGA	1 cut(s)	769
AvaII	GGWCC	1 cut(s)	772
BarI	GAAGNNNNNNTAC	2 cut(s)	484, 516
Bbv12I	GWGCWC	1 cut(s)	46
BbvI	GCAGC	1 cut(s)	105
BccI	CCATC	2 cut(s)	98, 247
BciT130I	CCWGG	1 cut(s)	351
BclI	TGATCA	2 cut(s)	843, 867
BcnI	CCSGG	1 cut(s)	169
BcoDI	GTCTC	1 cut(s)	524
BfaI	CTAG	2 cut(s)	308, 516
BfrI	CTTAAG	1 cut(s)	185
BfuAI	ACCTGC	1 cut(s)	18
BglII	AGATCT	1 cut(s)	690
BisI	GCNGC	1 cut(s)	94
BlpI	GCTNAGC	1 cut(s)	45
BlsI	GCNGC	1 cut(s)	95
Bme1390I	CCNGG	2 cut(s)	169, 351
Bme18I	GGWCC	1 cut(s)	772
BmgT120I	GGNCC	1 cut(s)	772
BmrFI	CCNGG	2 cut(s)	169, 351
BmsI	GCATC	5 cut(s)	181, 233, 694, 709, 784
Bpu1102I	GCTNAGC	1 cut(s)	45
BpuEI	CTTGAG	2 cut(s)	708, 884
BpuMI	CCSGG	1 cut(s)	169
BsaBI	GATNNNNATC	2 cut(s)	431, 471
BsaJI	CCNNGG	3 cut(s)	289, 852, 905
BsaWI	WCCGGW	1 cut(s)	53
Bsc4I	CCNNNNNNNGG	3 cut(s)	16, 595, 703
Bse1I	ACTGG	1 cut(s)	559
Bse3DI	GCAATG	1 cut(s)	870
Bse8I	GATNNNNATC	2 cut(s)	431, 471
BseAI	TCCGGA	1 cut(s)	53
BseBI	CCWGG	1 cut(s)	351
BseDI	CCNNGG	3 cut(s)	289, 852, 905
BseGI	GGATG	4 cut(s)	196, 258, 359, 393
BseJI	GATNNNNATC	2 cut(s)	431, 471
BseLI	CCNNNNNNNGG	3 cut(s)	16, 595, 703
BseMI	GCAATG	1 cut(s)	870
BseMII	CTCAG	2 cut(s)	59, 767
BseNI	ACTGG	1 cut(s)	559
BseRI	GAGGAG	1 cut(s)	215
BseXI	GCAGC	1 cut(s)	105
BshFI	GGCC	1 cut(s)	82
BsiHKAI	GWGCWC	1 cut(s)	46
BsiSI	CCGG	2 cut(s)	54, 168
BslFI	GGGAC	2 cut(s)	612, 802
BslI	CCNNNNNNNGG	3 cut(s)	16, 595, 703
BsmAI	GTCTC	1 cut(s)	524
BsmFI	GGGAC	2 cut(s)	612, 802
BsnI	GGCC	1 cut(s)	82
Bsp1286I	GDGCHC	1 cut(s)	46
Bsp13I	TCCGGA	1 cut(s)	53
Bsp1407I	TGTACA	1 cut(s)	778
Bsp143I	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
Bsp1720I	GCTNAGC	1 cut(s)	45
Bsp19I	CCATGG	2 cut(s)	852, 905
BspACI	CCGC	3 cut(s)	91, 108, 250
BspANI	GGCC	1 cut(s)	82
BspCNI	CTCAG	2 cut(s)	58, 766
BspEI	TCCGGA	1 cut(s)	53
BspMI	ACCTGC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	127
BspTI	CTTAAG	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	870
BsrGI	TGTACA	1 cut(s)	778
BsrI	ACTGG	1 cut(s)	559
BssECI	CCNNGG	3 cut(s)	289, 852, 905
BssMI	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
BssT1I	CCWWGG	2 cut(s)	852, 905
Bst2UI	CCWGG	1 cut(s)	351
Bst4CI	ACNGT	2 cut(s)	505, 652
Bst6I	CTCTTC	2 cut(s)	487, 522
BstAFI	CTTAAG	1 cut(s)	185
BstAUI	TGTACA	1 cut(s)	778
BstC8I	GCNNGC	1 cut(s)	818
BstDEI	CTNAG	4 cut(s)	45, 331, 449, 753
BstDSI	CCRYGG	3 cut(s)	289, 852, 905
BstF5I	GGATG	4 cut(s)	196, 258, 359, 393
BstKTI	GATC	6 cut(s)	135, 383, 435, 693, 846, 870
BstMAI	GTCTC	1 cut(s)	524
BstMBI	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 236
BstNI	CCWGG	1 cut(s)	351
BstSCI	CCNGG	2 cut(s)	167, 349
BstV1I	GCAGC	1 cut(s)	105
BstX2I	RGATCY	2 cut(s)	132, 690
BstYI	RGATCY	2 cut(s)	132, 690
BsuRI	GGCC	1 cut(s)	82
BtgI	CCRYGG	3 cut(s)	289, 852, 905
BtsCI	GGATG	4 cut(s)	196, 258, 359, 393
BtsI	GCAGTG	2 cut(s)	774, 804
BtsIMutI	CAGTG	3 cut(s)	37, 774, 804
BveI	ACCTGC	1 cut(s)	18
Cac8I	GCNNGC	1 cut(s)	818
Cfr13I	GGNCC	1 cut(s)	772
Csp6I	GTAC	2 cut(s)	611, 779
CspCI	CAANNNNNGTGG	2 cut(s)	750, 785
CviAII	CATG	7 cut(s)	232, 394, 644, 776, 841, 853, 906
CviQI	GTAC	2 cut(s)	611, 779
DdeI	CTNAG	4 cut(s)	45, 331, 449, 753
DpnI	GATC	6 cut(s)	134, 382, 434, 692, 845, 869
DpnII	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
Eam1104I	CTCTTC	2 cut(s)	487, 522
EarI	CTCTTC	2 cut(s)	487, 522
EciI	GGCGGA	1 cut(s)	123
Eco130I	CCWWGG	2 cut(s)	852, 905
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	1 cut(s)	772
EcoRII	CCWGG	1 cut(s)	349
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	2 cut(s)	852, 905
EcoT22I	ATGCAT	1 cut(s)	842
ErhI	CCWWGG	2 cut(s)	852, 905
FaeI	CATG	7 cut(s)	235, 397, 647, 779, 844, 856, 909
FaiI	YATR	8 cut(s)	233, 395, 645, 704, 777, 842, 854, 907
FaqI	GGGAC	2 cut(s)	612, 802
FatI	CATG	7 cut(s)	231, 393, 643, 775, 840, 852, 905
FauI	CCCGC	1 cut(s)	98
FbaI	TGATCA	2 cut(s)	843, 867
Fnu4HI	GCNGC	1 cut(s)	94
FokI	GGATG	4 cut(s)	203, 265, 366, 400
Fsp4HI	GCNGC	1 cut(s)	94
FspBI	CTAG	2 cut(s)	308, 516
GluI	GCNGC	1 cut(s)	94
HaeIII	GGCC	1 cut(s)	82
HapII	CCGG	2 cut(s)	54, 168
Hin1II	CATG	7 cut(s)	235, 397, 647, 779, 844, 856, 909
HincII	GTYRAC	1 cut(s)	376
HindII	GTYRAC	1 cut(s)	376
HindIII	AAGCTT	1 cut(s)	671
HinfI	GANTC	4 cut(s)	20, 203, 459, 495
HpaII	CCGG	2 cut(s)	54, 168
HphI	GGTGA	1 cut(s)	769
Hpy166II	GTNNAC	2 cut(s)	376, 772
Hpy188I	TCNGA	3 cut(s)	103, 444, 690
Hpy188III	TCNNGA	7 cut(s)	54, 476, 577, 635, 677, 831, 865
Hpy8I	GTNNAC	2 cut(s)	376, 772
HpyAV	CCTTC	5 cut(s)	60, 72, 202, 355, 574
HpyCH4III	ACNGT	2 cut(s)	505, 652
HpyCH4V	TGCA	5 cut(s)	685, 767, 809, 820, 840
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 236
HpyF3I	CTNAG	4 cut(s)	45, 331, 449, 753
Hsp92II	CATG	7 cut(s)	235, 397, 647, 779, 844, 856, 909
Kpn2I	TCCGGA	1 cut(s)	53
Ksp22I	TGATCA	2 cut(s)	843, 867
Kzo9I	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
Lsp1109I	GCAGC	1 cut(s)	105
LweI	GCATC	5 cut(s)	181, 233, 694, 709, 784
MaeI	CTAG	2 cut(s)	308, 516
MaeIII	GTNAC	3 cut(s)	214, 505, 757
MalI	GATC	6 cut(s)	134, 382, 434, 692, 845, 869
MboI	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
MboII	GAAGA	3 cut(s)	504, 539, 638
MfeI	CAATTG	1 cut(s)	534
MflI	RGATCY	2 cut(s)	132, 690
MhlI	GDGCHC	1 cut(s)	46
MluCI	AATT	6 cut(s)	84, 400, 437, 534, 630, 660
MlyI	GAGTC	2 cut(s)	212, 504
MnlI	CCTC	9 cut(s)	28, 133, 193, 472, 596, 633, 707, 724, 899
Mph1103I	ATGCAT	1 cut(s)	842
MroI	TCCGGA	1 cut(s)	53
MroXI	GAANNNNTTC	1 cut(s)	630
MseI	TTAA	2 cut(s)	177, 186
MslI	CAYNNNNRTG	1 cut(s)	851
MspCI	CTTAAG	1 cut(s)	185
MspI	CCGG	2 cut(s)	54, 168
MspR9I	CCNGG	2 cut(s)	169, 351
MunI	CAATTG	1 cut(s)	534
MvaI	CCWGG	1 cut(s)	351
MwoI	GCNNNNNNNGC	2 cut(s)	169, 236
NciI	CCSGG	1 cut(s)	169
NcoI	CCATGG	2 cut(s)	852, 905
NdeII	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
NlaIII	CATG	7 cut(s)	235, 397, 647, 779, 844, 856, 909
NmuCI	GTSAC	1 cut(s)	757
NsiI	ATGCAT	1 cut(s)	842
PdmI	GAANNNNTTC	1 cut(s)	630
PfeI	GAWTC	2 cut(s)	20, 459
PkrI	GCNGC	1 cut(s)	95
PleI	GAGTC	2 cut(s)	211, 503
PpsI	GAGTC	2 cut(s)	211, 503
Psp6I	CCWGG	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	349
PspPI	GGNCC	1 cut(s)	772
PsuI	RGATCY	2 cut(s)	132, 690
RsaI	GTAC	2 cut(s)	612, 780
RsaNI	GTAC	2 cut(s)	611, 779
RseI	CAYNNNNRTG	1 cut(s)	851
SaqAI	TTAA	2 cut(s)	177, 186
SatI	GCNGC	1 cut(s)	94
Sau3AI	GATC	6 cut(s)	132, 380, 432, 690, 843, 867
Sau96I	GGNCC	1 cut(s)	772
SchI	GAGTC	2 cut(s)	212, 504
ScrFI	CCNGG	2 cut(s)	169, 351
SduI	GDGCHC	1 cut(s)	46
SfaNI	GCATC	5 cut(s)	181, 233, 694, 709, 784
SinI	GGWCC	1 cut(s)	772
SmiMI	CAYNNNNRTG	1 cut(s)	851
SmlI	CTYRAG	3 cut(s)	185, 723, 899
SmoI	CTYRAG	3 cut(s)	185, 723, 899
Sse9I	AATT	6 cut(s)	84, 400, 437, 534, 630, 660
SsiI	CCGC	3 cut(s)	91, 108, 250
SspI	AATATT	1 cut(s)	573
SspMI	CTAG	2 cut(s)	308, 516
StyD4I	CCNGG	2 cut(s)	167, 349
StyI	CCWWGG	2 cut(s)	852, 905
TaaI	ACNGT	2 cut(s)	505, 652
TaqI	TCGA	4 cut(s)	69, 206, 435, 699
TasI	AATT	6 cut(s)	84, 400, 437, 534, 630, 660
TatI	WGTACW	1 cut(s)	778
TfiI	GAWTC	2 cut(s)	20, 459
Tru1I	TTAA	2 cut(s)	177, 186
Tru9I	TTAA	2 cut(s)	177, 186
TscAI	CASTG	3 cut(s)	37, 774, 811
TseFI	GTSAC	1 cut(s)	757
TseI	GCWGC	1 cut(s)	93
Tsp45I	GTSAC	1 cut(s)	757
TspDTI	ATGAA	7 cut(s)	17, 248, 285, 393, 404, 483, 540
TspGWI	ACGGA	1 cut(s)	32
TspRI	CASTG	3 cut(s)	37, 774, 811
Vha464I	CTTAAG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	772
XapI	RAATTY	3 cut(s)	400, 437, 630
XmnI	GAANNNNTTC	1 cut(s)	630
XspI	CTAG	2 cut(s)	308, 516
Zsp2I	ATGCAT	1 cut(s)	842

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.