Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Forward (+)

83738270 .. 83738806

Gene Structure 537 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG614500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 537 bp

ATGTATAGCAAGTGTGGGAGCATTGATGATGCTCACTGTGTTTTTGATGAGATGCCGAAGAAGAATGCCATTATAGCAGGTTATGAACTTCATGGTTATAGTGAGGAAGCTTTGAGTATGTACTATGATATGCGTGATTCTGGTGTGCCGATGGACCATTTTACGTTTTCCATGATCATAAGAACATGTGCAAGGTTGGCGTCGTTAGAACATGCAAAGCAAGCACATGCAGGTCTAGTTCGTCATGGTTTTGGGTTGGATATAGTGGCAAACACATTGCTTGTGGACTTCTATAGCAAATGGGGGAGGATAGAAGATGCTCATCATGTTTTTGATCAGATGCCTAACAAGAATGTCATATCTTGGAATGCCTTGATTGCTGGATATGGTAACCATGGTCGGGGTGATGAGGCTGTTGAGATGTTTGAGAAGATGCTTCAAGAAGGAATGGTACCCAACCATATATGTTACCTTTCTTGCTGTCTTGTCTGCTTGCAGTCGTTCAAGTTTATCAGAACTTGGATGAGAGATTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

178

Amino Acids

20.34

Weight (kDa)

5.88

Isoelectric Point (pI)

40.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 65	8.5e-09	PPR repeat family
PPR_2	PF13041	117 - 157	3.3e-11	PPR repeat family
PPR_1	PF12854	118 - 145	1e-06	PPR repeat
PPR	PF01535	120 - 149	1.2e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	68, 221
Acc65I	GGTACC	1 cut(s)	451
AccB1I	GGYRCC	1 cut(s)	451
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	122, 453
AfiI	CCNNNNNNNGG	1 cut(s)	400
AflIII	ACRYGT	1 cut(s)	185
AgsI	TTSAA	2 cut(s)	440, 505
AluBI	AGCT	1 cut(s)	110
AluI	AGCT	1 cut(s)	110
Asp718I	GGTACC	1 cut(s)	451
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	154
BanI	GGYRCC	1 cut(s)	451
BarI	GAAGNNNNNNTAC	2 cut(s)	435, 467
BccI	CCATC	1 cut(s)	145
BclI	TGATCA	2 cut(s)	174, 334
BfaI	CTAG	1 cut(s)	236
BfmI	CTRYAG	1 cut(s)	292
BfuAI	ACCTGC	2 cut(s)	68, 221
Bme18I	GGWCC	1 cut(s)	154
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	453
BmsI	GCATC	5 cut(s)	19, 42, 307, 330, 423
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	394
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	528
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	275
BshNI	GGYRCC	1 cut(s)	451
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmI	GAATGC	2 cut(s)	70, 373
Bsp143I	GATC	2 cut(s)	174, 334
Bsp19I	CCATGG	1 cut(s)	394
BspLI	GGNNCC	1 cut(s)	453
BspMI	ACCTGC	2 cut(s)	68, 221
BspT107I	GGYRCC	1 cut(s)	451
BsrDI	GCAATG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	2 cut(s)	174, 334
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	394
Bst4CI	ACNGT	1 cut(s)	38
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	222, 494
BstDSI	CCRYGG	1 cut(s)	394
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	528
BstKTI	GATC	2 cut(s)	177, 337
BstMBI	GATC	2 cut(s)	174, 334
BstMWI	GCNNNNNNNGC	4 cut(s)	74, 197, 221, 377
BstNSI	RCATGY	3 cut(s)	189, 215, 230
BstPI	GGTNACC	1 cut(s)	389
BstSFI	CTRYAG	1 cut(s)	292
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	2 cut(s)	68, 221
Cac8I	GCNNGC	2 cut(s)	222, 494
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	121, 452
CviAII	CATG	8 cut(s)	92, 172, 186, 212, 227, 245, 326, 395
CviJI	RGCY	2 cut(s)	110, 413
CviKI_1	RGCY	2 cut(s)	110, 413
CviQI	GTAC	2 cut(s)	121, 452
DpnI	GATC	2 cut(s)	176, 336
DpnII	GATC	2 cut(s)	174, 334
Eco130I	CCWWGG	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	154
Eco91I	GGTNACC	1 cut(s)	389
EcoO65I	GGTNACC	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	394
FaeI	CATG	8 cut(s)	95, 175, 189, 215, 230, 248, 329, 398
FatI	CATG	8 cut(s)	91, 171, 185, 211, 226, 244, 325, 394
FbaI	TGATCA	2 cut(s)	174, 334
FspBI	CTAG	1 cut(s)	236
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	200
Hin1II	CATG	8 cut(s)	95, 175, 189, 215, 230, 248, 329, 398
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	1 cut(s)	137
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	339, 515
Hpy188III	TCNNGA	1 cut(s)	440
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	1 cut(s)	437
HpyCH4III	ACNGT	1 cut(s)	38
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	4 cut(s)	191, 215, 230, 496
HpyF10VI	GCNNNNNNNGC	4 cut(s)	74, 197, 221, 377
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	200
Hsp92II	CATG	8 cut(s)	95, 175, 189, 215, 230, 248, 329, 398
KpnI	GGTACC	1 cut(s)	455
Ksp22I	TGATCA	2 cut(s)	174, 334
Kzo9I	GATC	2 cut(s)	174, 334
LmnI	GCTCC	1 cut(s)	18
LpnPI	CCDG	4 cut(s)	63, 126, 216, 366
LweI	GCATC	5 cut(s)	19, 42, 307, 330, 423
MaeI	CTAG	1 cut(s)	236
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	389, 467
MalI	GATC	2 cut(s)	176, 336
MboI	GATC	2 cut(s)	174, 334
MboII	GAAGA	4 cut(s)	70, 73, 326, 442
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	3 cut(s)	97, 300, 403
Mva1269I	GAATGC	2 cut(s)	70, 373
MwoI	GCNNNNNNNGC	4 cut(s)	74, 197, 221, 377
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	174, 334
NlaIII	CATG	8 cut(s)	95, 175, 189, 215, 230, 248, 329, 398
NlaIV	GGNNCC	1 cut(s)	453
NspI	RCATGY	3 cut(s)	189, 215, 230
PciI	ACATGT	1 cut(s)	185
PctI	GAATGC	2 cut(s)	70, 373
PfeI	GAWTC	1 cut(s)	137
PscI	ACATGT	1 cut(s)	185
PspEI	GGTNACC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	453
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	122, 453
RsaNI	GTAC	2 cut(s)	121, 452
Sau3AI	GATC	2 cut(s)	174, 334
Sau96I	GGNCC	1 cut(s)	154
SetI	ASST	6 cut(s)	82, 112, 167, 197, 235, 474
SfaNI	GCATC	5 cut(s)	19, 42, 307, 330, 423
SfcI	CTRYAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	154
SspMI	CTAG	1 cut(s)	236
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	1 cut(s)	38
TaiI	ACGT	1 cut(s)	167
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	1 cut(s)	137
TscAI	CASTG	1 cut(s)	41
TspDTI	ATGAA	2 cut(s)	80, 99
TspRI	CASTG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	154
XceI	RCATGY	3 cut(s)	189, 215, 230
XspI	CTAG	1 cut(s)	236

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.