Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8459511.1

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 913

Gene Structure 913 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8459511.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 913 bp

atcttggaatgccttgattgctggatatggtaaccatggtcggggtgatgaggctgttgagatgtttgagaagatgcttcaggaaggaatggtacccaaccatgttacttttcttgctgtcttgtctgcttgcagtcgttcaggtttatcagaacttggatgggagatttttgaatcaatgggcagggattacaagattaagccccgtgctatgcattatgcttgtatgattgaattgctaggacaagagggcaatttagatgaagcgtttgcactgataagaactgctcccttaaagcctacagcaaacatgtgggctgctctgctgacagcttgtcgaatccatgagaatttagagcttggcaaaattgcagccgaagagctctatgggatggagcctgagaagctaagtaattatgttgtgctcctgaatatatataacagttgtggaaagttgaaggaagctgctgctgttgttcagactctaagaagaaagggtttgagaatgcttccggcatgcagttggattgaaattaagaaacaggtacatatttttcattccggagatgaaaggcatgcccaaacaaaagagatttacgagaaagtggacgaattgatggtcaggattaggagacgtggttacatccctgacaagaagcatctacttcctgatgtggatgaacacgagcacatctcagcttaccacagtgagaaactggctatagcttacggcttgataagtacgtcagacgggacgccactgcaaattgtgcaaggccatcgtatttgcagagactgccattccgcaatcaagttaatagctaaggtgactgaacgggaaattgtagtgagggatgccagcagattccaccacttcaagaatgggagttgttcttgtgggaattactggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

303

Amino Acids

34.32

Weight (kDa)

7.22

Isoelectric Point (pI)

45.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	92
AccB1I	GGYRCC	1 cut(s)	92
AccIII	TCCGGA	1 cut(s)	561
AciI	CCGC	1 cut(s)	805
AcsI	RAATTY	1 cut(s)	350
AcuI	CTGAAG	1 cut(s)	63
AcyI	GRCGYC	1 cut(s)	756
AfaI	GTAC	3 cut(s)	94, 547, 743
AfiI	CCNNNNNNNGG	1 cut(s)	41
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	5 cut(s)	174, 234, 458, 531, 878
AhdI	GACNNNNNGTC	1 cut(s)	334
AjiI	CACGTC	1 cut(s)	636
AluBI	AGCT	8 cut(s)	333, 359, 383, 407, 465, 699, 726, 822
AluI	AGCT	8 cut(s)	333, 359, 383, 407, 465, 699, 726, 822
Alw21I	GWGCWC	3 cut(s)	385, 427, 691
Alw26I	GTCTC	2 cut(s)	626, 787
AlwNI	CAGNNNCTG	1 cut(s)	796
Aor13HI	TCCGGA	1 cut(s)	561
AoxI	GGCC	1 cut(s)	776
ApeKI	GCWGC	4 cut(s)	318, 372, 465, 468
ApoI	RAATTY	1 cut(s)	350
ArsI	GACNNNNNNTTYG	2 cut(s)	604, 636
Asp718I	GGTACC	1 cut(s)	92
AsuHPI	GGTGA	2 cut(s)	57, 839
BanI	GGYRCC	1 cut(s)	92
BanII	GRGCYC	1 cut(s)	385
BarI	GAAGNNNNNNTAC	2 cut(s)	76, 108
BauI	CACGAG	1 cut(s)	684
Bbv12I	GWGCWC	3 cut(s)	385, 427, 691
BbvI	GCAGC	4 cut(s)	305, 384, 452, 455
BccI	CCATC	4 cut(s)	154, 386, 611, 787
BceAI	ACGGC	1 cut(s)	746
BcgI	CGANNNNNNTGC	2 cut(s)	762, 796
BcoDI	GTCTC	2 cut(s)	626, 787
BfaI	CTAG	1 cut(s)	240
BfmI	CTRYAG	2 cut(s)	301, 721
BisI	GCNGC	4 cut(s)	319, 373, 466, 469
BlsI	GCNGC	4 cut(s)	320, 374, 467, 470
BmeRI	GACNNNNNGTC	1 cut(s)	334
BmgBI	CACGTC	1 cut(s)	636
BmiI	GGNNCC	2 cut(s)	94, 397
BmsI	GCATC	3 cut(s)	64, 668, 845
BplI	GAGNNNNNCTC	2 cut(s)	678, 710
Bpu10I	CCTNAGC	1 cut(s)	823
BsaHI	GRCGYC	1 cut(s)	756
BsaJI	CCNNGG	1 cut(s)	35
BsaWI	WCCGGW	1 cut(s)	561
BsaXI	ACNNNNNCTCC	2 cut(s)	623, 653
Bsc4I	CCNNNNNNNGG	1 cut(s)	41
Bse1I	ACTGG	2 cut(s)	721, 912
BseAI	TCCGGA	1 cut(s)	561
BseDI	CCNNGG	1 cut(s)	35
BseGI	GGATG	5 cut(s)	165, 397, 643, 683, 860
BseLI	CCNNNNNNNGG	1 cut(s)	41
BseMII	CTCAG	2 cut(s)	391, 709
BseNI	ACTGG	2 cut(s)	721, 912
BseXI	GCAGC	4 cut(s)	305, 384, 452, 455
BshFI	GGCC	1 cut(s)	778
BshNI	GGYRCC	1 cut(s)	92
BsiHKAI	GWGCWC	3 cut(s)	385, 427, 691
BsiSI	CCGG	2 cut(s)	513, 562
BslFI	GGGAC	1 cut(s)	767
BslI	CCNNNNNNNGG	1 cut(s)	41
BsmAI	GTCTC	2 cut(s)	626, 787
BsmBI	CGTCTC	1 cut(s)	626
BsmFI	GGGAC	1 cut(s)	767
BsmI	GAATGC	2 cut(s)	14, 511
BsnI	GGCC	1 cut(s)	778
Bsp1286I	GDGCHC	3 cut(s)	385, 427, 691
Bsp13I	TCCGGA	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	35
BspACI	CCGC	1 cut(s)	805
BspANI	GGCC	1 cut(s)	778
BspCNI	CTCAG	2 cut(s)	392, 708
BspEI	TCCGGA	1 cut(s)	561
BspLI	GGNNCC	2 cut(s)	94, 397
BspQI	GCTCTTC	1 cut(s)	373
BspT107I	GGYRCC	1 cut(s)	92
BsrI	ACTGG	2 cut(s)	721, 912
BssECI	CCNNGG	1 cut(s)	35
BssNI	GRCGYC	1 cut(s)	756
BssSI	CACGAG	1 cut(s)	684
BssT1I	CCWWGG	1 cut(s)	35
Bst2BI	CACGAG	1 cut(s)	684
Bst4CI	ACNGT	2 cut(s)	444, 708
Bst6I	CTCTTC	1 cut(s)	373
BstACI	GRCGYC	1 cut(s)	756
BstAPI	GCANNNNNTGC	2 cut(s)	770, 796
BstC8I	GCNNGC	4 cut(s)	131, 518, 577, 860
BstDEI	CTNAG	5 cut(s)	400, 408, 486, 695, 823
BstDSI	CCRYGG	1 cut(s)	35
BstEII	GGTNACC	1 cut(s)	30
BstF5I	GGATG	5 cut(s)	165, 397, 643, 683, 860
BstMAI	GTCTC	2 cut(s)	626, 787
BstMWI	GCNNNNNNNGC	4 cut(s)	18, 404, 770, 796
BstNSI	RCATGY	3 cut(s)	314, 520, 579
BstPI	GGTNACC	1 cut(s)	30
BstSFI	CTRYAG	2 cut(s)	301, 721
BstV1I	GCAGC	4 cut(s)	305, 384, 452, 455
BsuRI	GGCC	1 cut(s)	778
BtgI	CCRYGG	1 cut(s)	35
BtrI	CACGTC	1 cut(s)	636
BtsCI	GGATG	5 cut(s)	165, 397, 643, 683, 860
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	3 cut(s)	273, 713, 759
Cac8I	GCNNGC	4 cut(s)	131, 518, 577, 860
CaiI	CAGNNNCTG	1 cut(s)	796
CseI	GACGC	1 cut(s)	764
Csp6I	GTAC	3 cut(s)	93, 546, 742
CviAII	CATG	6 cut(s)	36, 102, 311, 345, 517, 576
CviQI	GTAC	3 cut(s)	93, 546, 742
DdeI	CTNAG	5 cut(s)	400, 408, 486, 695, 823
DriI	GACNNNNNGTC	1 cut(s)	334
Eam1104I	CTCTTC	1 cut(s)	373
Eam1105I	GACNNNNNGTC	1 cut(s)	334
EarI	CTCTTC	1 cut(s)	373
Ecl136II	GAGCTC	1 cut(s)	383
Eco130I	CCWWGG	1 cut(s)	35
Eco24I	GRGCYC	1 cut(s)	385
Eco53kI	GAGCTC	1 cut(s)	383
Eco57I	CTGAAG	1 cut(s)	63
Eco91I	GGTNACC	1 cut(s)	30
EcoICRI	GAGCTC	1 cut(s)	383
EcoO65I	GGTNACC	1 cut(s)	30
EcoT14I	CCWWGG	1 cut(s)	35
EcoT22I	ATGCAT	1 cut(s)	217
EcoT38I	GRGCYC	1 cut(s)	385
ErhI	CCWWGG	1 cut(s)	35
Esp3I	CGTCTC	1 cut(s)	626
FaeI	CATG	6 cut(s)	39, 105, 314, 348, 520, 579
FaqI	GGGAC	1 cut(s)	767
FatI	CATG	6 cut(s)	35, 101, 310, 344, 516, 575
Fnu4HI	GCNGC	4 cut(s)	319, 373, 466, 469
FokI	GGATG	5 cut(s)	172, 404, 630, 690, 867
FriOI	GRGCYC	1 cut(s)	385
Fsp4HI	GCNGC	4 cut(s)	319, 373, 466, 469
FspBI	CTAG	1 cut(s)	240
GluI	GCNGC	4 cut(s)	319, 373, 466, 469
HaeIII	GGCC	1 cut(s)	778
HapII	CCGG	2 cut(s)	513, 562
HgaI	GACGC	1 cut(s)	764
Hin1I	GRCGYC	1 cut(s)	756
Hin1II	CATG	6 cut(s)	39, 105, 314, 348, 520, 579
HinfI	GANTC	4 cut(s)	174, 340, 482, 865
HpaII	CCGG	2 cut(s)	513, 562
HphI	GGTGA	2 cut(s)	57, 839
Hpy166II	GTNNAC	1 cut(s)	608
Hpy188I	TCNGA	3 cut(s)	152, 481, 749
Hpy188III	TCNNGA	6 cut(s)	81, 428, 562, 623, 669, 878
Hpy8I	GTNNAC	1 cut(s)	608
HpyAV	CCTTC	2 cut(s)	78, 452
HpyCH4III	ACNGT	2 cut(s)	444, 708
HpyCH4IV	ACGT	2 cut(s)	635, 744
HpyCH4V	TGCA	8 cut(s)	133, 215, 273, 372, 520, 764, 773, 790
HpyF10VI	GCNNNNNNNGC	4 cut(s)	18, 404, 770, 796
HpyF3I	CTNAG	5 cut(s)	400, 408, 486, 695, 823
HpySE526I	ACGT	2 cut(s)	635, 744
Hsp92I	GRCGYC	1 cut(s)	756
Hsp92II	CATG	6 cut(s)	39, 105, 314, 348, 520, 579
Kpn2I	TCCGGA	1 cut(s)	561
KpnI	GGTACC	1 cut(s)	96
LguI	GCTCTTC	1 cut(s)	373
LmnI	GCTCC	3 cut(s)	293, 395, 430
Lsp1109I	GCAGC	4 cut(s)	305, 384, 452, 455
LweI	GCATC	3 cut(s)	64, 668, 845
MaeI	CTAG	1 cut(s)	240
MaeII	ACGT	2 cut(s)	635, 744
MaeIII	GTNAC	4 cut(s)	30, 104, 639, 827
MboII	GAAGA	3 cut(s)	83, 390, 502
MhlI	GDGCHC	3 cut(s)	385, 427, 691
MlyI	GAGTC	1 cut(s)	476
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	3 cut(s)	44, 242, 844
Mph1103I	ATGCAT	1 cut(s)	217
MroI	TCCGGA	1 cut(s)	561
MseI	TTAA	4 cut(s)	199, 294, 535, 816
MspI	CCGG	2 cut(s)	513, 562
Mva1269I	GAATGC	2 cut(s)	14, 511
MwoI	GCNNNNNNNGC	4 cut(s)	18, 404, 770, 796
NcoI	CCATGG	1 cut(s)	35
NlaIII	CATG	6 cut(s)	39, 105, 314, 348, 520, 579
NlaIV	GGNNCC	2 cut(s)	94, 397
NmuCI	GTSAC	1 cut(s)	827
NsiI	ATGCAT	1 cut(s)	217
NspI	RCATGY	3 cut(s)	314, 520, 579
PaeI	GCATGC	2 cut(s)	520, 579
PciI	ACATGT	1 cut(s)	310
PciSI	GCTCTTC	1 cut(s)	373
PctI	GAATGC	2 cut(s)	14, 511
PfeI	GAWTC	3 cut(s)	174, 340, 865
PkrI	GCNGC	4 cut(s)	320, 374, 467, 470
PleI	GAGTC	1 cut(s)	476
PpsI	GAGTC	1 cut(s)	476
PscI	ACATGT	1 cut(s)	310
Psp124BI	GAGCTC	1 cut(s)	385
PspEI	GGTNACC	1 cut(s)	30
PspN4I	GGNNCC	2 cut(s)	94, 397
PstNI	CAGNNNCTG	1 cut(s)	796
RsaI	GTAC	3 cut(s)	94, 547, 743
RsaNI	GTAC	3 cut(s)	93, 546, 742
SacI	GAGCTC	1 cut(s)	385
SapI	GCTCTTC	1 cut(s)	373
SaqAI	TTAA	4 cut(s)	199, 294, 535, 816
SatI	GCNGC	4 cut(s)	319, 373, 466, 469
SchI	GAGTC	1 cut(s)	476
SduI	GDGCHC	3 cut(s)	385, 427, 691
SfaNI	GCATC	3 cut(s)	64, 668, 845
SfcI	CTRYAG	2 cut(s)	301, 721
SphI	GCATGC	2 cut(s)	520, 579
SsiI	CCGC	1 cut(s)	805
SspMI	CTAG	1 cut(s)	240
SstI	GAGCTC	1 cut(s)	385
StyI	CCWWGG	1 cut(s)	35
TaaI	ACNGT	2 cut(s)	444, 708
TaiI	ACGT	2 cut(s)	638, 747
TaqI	TCGA	1 cut(s)	338
TfiI	GAWTC	3 cut(s)	174, 340, 865
Tru1I	TTAA	4 cut(s)	199, 294, 535, 816
Tru9I	TTAA	4 cut(s)	199, 294, 535, 816
TscAI	CASTG	3 cut(s)	280, 713, 766
TseFI	GTSAC	1 cut(s)	827
TseI	GCWGC	4 cut(s)	318, 372, 465, 468
Tsp45I	GTSAC	1 cut(s)	827
TspDTI	ATGAA	4 cut(s)	277, 546, 583, 694
TspRI	CASTG	3 cut(s)	280, 713, 766
XapI	RAATTY	1 cut(s)	350
XceI	RCATGY	3 cut(s)	314, 520, 579
XcmI	CCANNNNNNNNNTGG	1 cut(s)	879
XspI	CTAG	1 cut(s)	240
Zsp2I	ATGCAT	1 cut(s)	217

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.