Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Forward (+)

82690670 .. 82691652

Gene Structure 983 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ53595

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGTATAGCAAGTGTGGGAGCATTGATGATGCTCACTGTGTTTTTGATGAGATGCCGAAGAAGAATGCCATTATAGCAGGTTATGAACTTCATGGTTATAGTGAGGAAGCTTTGAGTATGTACTATGATATGCGTGATTCTGGTGTGCCGATGGACCATTTTACGTTTTCCATGATCATAAGAACATGTGCAAGGTTGGCGTCGTTAGAACATGCAAAGCAAGCACATGCAGGTCTAGTTCGTCATGGTTTTGGGTTGGATATAGTGGCAAACACATTGCTTGTGGACTTCTATAGCAAATGGGGGAGGATAGAAGATGCTCATCATGTTTTTGATCAGATGCCTAACAAGAATGTCATATCTTGGAATGCCTTGATTGCTGGATATGGTAACCATGGTCGGGGTGATGAGGCTGTTGAGATGTTTGAGAAGATGCTTCAAGAAGGAATGATTTTTGAATCAATGAGCAGGGATTACAAGATTAAGCCCCGTGCTATGCATTATGCTTGTATGATTGAATTGCTAGGACAAGAGGGCAATTTAGATGAAGCGTTTGCAATAATAAGAACTGCTCCCTTAAAGCCTACAGCAAACATGTGGGCTGCTCTGCTGACAGCTTGTCGAATCCATGAGAATTTAGAGCTTGGCAAAATTGCTGCTGAAGAGCTCTATGGGATGGAGCCTGAGAAGCAAAGTAATTATGTTGTGCTCCTAAATATATACAACAGTTGTGGAAAGTTGAAGGAAGTTGCTGCTGTTGCTCAGACTCTAAGAAGAAAGGATTTGAGAATGCTTCCGGCATGCAGTTGGATTGAAATTAAGAAACAGGTACATATTTTTCATTCCGGAGATGAAAGGCATGCCCAAACAAGAGAGATTTACGAGAAATTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

297

Amino Acids

33.81

Weight (kDa)

6.06

Isoelectric Point (pI)

49.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	22 - 65	1.9e-08	PPR repeat family
PPR_2	PF13041	117 - 150	5e-08	PPR repeat family
PPR_1	PF12854	118 - 145	2.1e-06	PPR repeat
PPR	PF01535	120 - 149	2.5e-09	PPR repeat
E_motif	PF20431	210 - 272	2.5e-13	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	68, 221
AccIII	TCCGGA	1 cut(s)	845
AcsI	RAATTY	1 cut(s)	634
AcuI	CTGAAG	1 cut(s)	681
AcyI	GRCGYC	1 cut(s)	200
AfaI	GTAC	2 cut(s)	122, 831
AfiI	CCNNNNNNNGG	1 cut(s)	400
AflIII	ACRYGT	2 cut(s)	185, 594
AgsI	TTSAA	5 cut(s)	440, 458, 518, 742, 815
AhdI	GACNNNNNGTC	1 cut(s)	618
AluBI	AGCT	4 cut(s)	110, 617, 643, 667
AluI	AGCT	4 cut(s)	110, 617, 643, 667
Alw21I	GWGCWC	2 cut(s)	669, 711
Aor13HI	TCCGGA	1 cut(s)	845
ApeKI	GCWGC	3 cut(s)	602, 656, 752
ApoI	RAATTY	1 cut(s)	634
AspS9I	GGNCC	1 cut(s)	154
AsuHPI	GGTGA	1 cut(s)	416
AvaII	GGWCC	1 cut(s)	154
BanII	GRGCYC	1 cut(s)	669
Bbv12I	GWGCWC	2 cut(s)	669, 711
BbvI	GCAGC	3 cut(s)	589, 643, 739
BccI	CCATC	2 cut(s)	145, 670
BclI	TGATCA	2 cut(s)	174, 334
BfaI	CTAG	2 cut(s)	236, 524
BfmI	CTRYAG	2 cut(s)	292, 585
BfuAI	ACCTGC	2 cut(s)	68, 221
BisI	GCNGC	3 cut(s)	603, 657, 753
BlsI	GCNGC	3 cut(s)	604, 658, 754
Bme18I	GGWCC	1 cut(s)	154
BmeRI	GACNNNNNGTC	1 cut(s)	618
BmgT120I	GGNCC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	681
BmsI	GCATC	5 cut(s)	19, 42, 307, 330, 423
BsaBI	GATNNNNATC	1 cut(s)	321
BsaHI	GRCGYC	1 cut(s)	200
BsaJI	CCNNGG	1 cut(s)	394
BsaWI	WCCGGW	1 cut(s)	845
Bsc4I	CCNNNNNNNGG	1 cut(s)	400
Bse3DI	GCAATG	1 cut(s)	275
Bse8I	GATNNNNATC	1 cut(s)	321
BseAI	TCCGGA	1 cut(s)	845
BseDI	CCNNGG	1 cut(s)	394
BseGI	GGATG	1 cut(s)	681
BseJI	GATNNNNATC	1 cut(s)	321
BseLI	CCNNNNNNNGG	1 cut(s)	400
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	675, 776
BseXI	GCAGC	3 cut(s)	589, 643, 739
BsiHKAI	GWGCWC	2 cut(s)	669, 711
BsiSI	CCGG	2 cut(s)	797, 846
BslI	CCNNNNNNNGG	1 cut(s)	400
BsmI	GAATGC	3 cut(s)	70, 373, 795
Bsp1286I	GDGCHC	2 cut(s)	669, 711
Bsp13I	TCCGGA	1 cut(s)	845
Bsp143I	GATC	2 cut(s)	174, 334
Bsp19I	CCATGG	1 cut(s)	394
BspCNI	CTCAG	2 cut(s)	676, 775
BspEI	TCCGGA	1 cut(s)	845
BspLI	GGNNCC	1 cut(s)	681
BspMI	ACCTGC	2 cut(s)	68, 221
BspQI	GCTCTTC	1 cut(s)	657
BsrDI	GCAATG	1 cut(s)	275
BssECI	CCNNGG	1 cut(s)	394
BssMI	GATC	2 cut(s)	174, 334
BssNI	GRCGYC	1 cut(s)	200
BssT1I	CCWWGG	1 cut(s)	394
Bst4CI	ACNGT	2 cut(s)	38, 728
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	222, 802, 861
BstDEI	CTNAG	3 cut(s)	684, 762, 770
BstDSI	CCRYGG	1 cut(s)	394
BstEII	GGTNACC	1 cut(s)	389
BstF5I	GGATG	1 cut(s)	681
BstKTI	GATC	2 cut(s)	177, 337
BstMBI	GATC	2 cut(s)	174, 334
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 197, 221, 377, 688, 758
BstNSI	RCATGY	6 cut(s)	189, 215, 230, 598, 804, 863
BstPI	GGTNACC	1 cut(s)	389
BstSFI	CTRYAG	2 cut(s)	292, 585
BstV1I	GCAGC	3 cut(s)	589, 643, 739
BtgI	CCRYGG	1 cut(s)	394
BtsCI	GGATG	1 cut(s)	681
BtsIMutI	CAGTG	1 cut(s)	34
BveI	ACCTGC	2 cut(s)	68, 221
Cac8I	GCNNGC	3 cut(s)	222, 802, 861
Cfr13I	GGNCC	1 cut(s)	154
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	2 cut(s)	121, 830
CspCI	CAANNNNNGTGG	2 cut(s)	712, 747
CviJI	RGCY	9 cut(s)	110, 413, 487, 583, 602, 617, 643, 667, 682
CviKI_1	RGCY	9 cut(s)	110, 413, 487, 583, 602, 617, 643, 667, 682
CviQI	GTAC	2 cut(s)	121, 830
DdeI	CTNAG	3 cut(s)	684, 762, 770
DpnI	GATC	2 cut(s)	176, 336
DpnII	GATC	2 cut(s)	174, 334
DriI	GACNNNNNGTC	1 cut(s)	618
Eam1104I	CTCTTC	1 cut(s)	657
Eam1105I	GACNNNNNGTC	1 cut(s)	618
EarI	CTCTTC	1 cut(s)	657
Ecl136II	GAGCTC	1 cut(s)	667
Eco130I	CCWWGG	1 cut(s)	394
Eco24I	GRGCYC	1 cut(s)	669
Eco47I	GGWCC	1 cut(s)	154
Eco53kI	GAGCTC	1 cut(s)	667
Eco57I	CTGAAG	1 cut(s)	681
Eco91I	GGTNACC	1 cut(s)	389
EcoICRI	GAGCTC	1 cut(s)	667
EcoO65I	GGTNACC	1 cut(s)	389
EcoT14I	CCWWGG	1 cut(s)	394
EcoT22I	ATGCAT	1 cut(s)	501
EcoT38I	GRGCYC	1 cut(s)	669
ErhI	CCWWGG	1 cut(s)	394
FbaI	TGATCA	2 cut(s)	174, 334
Fnu4HI	GCNGC	3 cut(s)	603, 657, 753
FokI	GGATG	1 cut(s)	688
FriOI	GRGCYC	1 cut(s)	669
Fsp4HI	GCNGC	3 cut(s)	603, 657, 753
FspBI	CTAG	2 cut(s)	236, 524
GluI	GCNGC	3 cut(s)	603, 657, 753
HapII	CCGG	2 cut(s)	797, 846
HgaI	GACGC	1 cut(s)	189
Hin1I	GRCGYC	1 cut(s)	200
HindIII	AAGCTT	1 cut(s)	108
HinfI	GANTC	4 cut(s)	137, 458, 624, 766
HpaII	CCGG	2 cut(s)	797, 846
HphI	GGTGA	1 cut(s)	416
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	2 cut(s)	339, 765
Hpy188III	TCNNGA	2 cut(s)	440, 846
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	437, 736
HpyCH4III	ACNGT	2 cut(s)	38, 728
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	6 cut(s)	191, 215, 230, 499, 557, 804
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 197, 221, 377, 688, 758
HpyF3I	CTNAG	3 cut(s)	684, 762, 770
HpySE526I	ACGT	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	200
Kpn2I	TCCGGA	1 cut(s)	845
Ksp22I	TGATCA	2 cut(s)	174, 334
Kzo9I	GATC	2 cut(s)	174, 334
LguI	GCTCTTC	1 cut(s)	657
LmnI	GCTCC	4 cut(s)	18, 577, 679, 714
LpnPI	CCDG	9 cut(s)	63, 126, 216, 366, 454, 696, 810, 812, 859
Lsp1109I	GCAGC	3 cut(s)	589, 643, 739
LweI	GCATC	5 cut(s)	19, 42, 307, 330, 423
MaeI	CTAG	2 cut(s)	236, 524
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	1 cut(s)	389
MalI	GATC	2 cut(s)	176, 336
MboI	GATC	2 cut(s)	174, 334
MboII	GAAGA	6 cut(s)	70, 73, 326, 442, 674, 786
MhlI	GDGCHC	2 cut(s)	669, 711
MluCI	AATT	7 cut(s)	518, 538, 634, 651, 697, 816, 887
MlyI	GAGTC	1 cut(s)	760
MmeI	TCCRAC	2 cut(s)	237, 788
MnlI	CCTC	4 cut(s)	97, 300, 403, 526
Mph1103I	ATGCAT	1 cut(s)	501
MroI	TCCGGA	1 cut(s)	845
MseI	TTAA	3 cut(s)	483, 578, 819
MspI	CCGG	2 cut(s)	797, 846
Mva1269I	GAATGC	3 cut(s)	70, 373, 795
MwoI	GCNNNNNNNGC	6 cut(s)	74, 197, 221, 377, 688, 758
NcoI	CCATGG	1 cut(s)	394
NdeII	GATC	2 cut(s)	174, 334
NlaIV	GGNNCC	1 cut(s)	681
NsiI	ATGCAT	1 cut(s)	501
NspI	RCATGY	6 cut(s)	189, 215, 230, 598, 804, 863
PaeI	GCATGC	2 cut(s)	804, 863
PciI	ACATGT	2 cut(s)	185, 594
PciSI	GCTCTTC	1 cut(s)	657
PctI	GAATGC	3 cut(s)	70, 373, 795
PfeI	GAWTC	3 cut(s)	137, 458, 624
PkrI	GCNGC	3 cut(s)	604, 658, 754
PleI	GAGTC	1 cut(s)	760
PpsI	GAGTC	1 cut(s)	760
PscI	ACATGT	2 cut(s)	185, 594
Psp124BI	GAGCTC	1 cut(s)	669
PspEI	GGTNACC	1 cut(s)	389
PspN4I	GGNNCC	1 cut(s)	681
PspPI	GGNCC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	122, 831
RsaNI	GTAC	2 cut(s)	121, 830
SacI	GAGCTC	1 cut(s)	669
SapI	GCTCTTC	1 cut(s)	657
SaqAI	TTAA	3 cut(s)	483, 578, 819
SatI	GCNGC	3 cut(s)	603, 657, 753
Sau3AI	GATC	2 cut(s)	174, 334
Sau96I	GGNCC	1 cut(s)	154
SchI	GAGTC	1 cut(s)	760
SduI	GDGCHC	2 cut(s)	669, 711
SetI	ASST	9 cut(s)	82, 112, 167, 197, 235, 619, 645, 669, 831
SfaNI	GCATC	5 cut(s)	19, 42, 307, 330, 423
SfcI	CTRYAG	2 cut(s)	292, 585
SinI	GGWCC	1 cut(s)	154
SphI	GCATGC	2 cut(s)	804, 863
Sse9I	AATT	7 cut(s)	518, 538, 634, 651, 697, 816, 887
SspMI	CTAG	2 cut(s)	236, 524
SstI	GAGCTC	1 cut(s)	669
StyI	CCWWGG	1 cut(s)	394
TaaI	ACNGT	2 cut(s)	38, 728
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	1 cut(s)	622
TasI	AATT	7 cut(s)	518, 538, 634, 651, 697, 816, 887
TatI	WGTACW	1 cut(s)	120
TfiI	GAWTC	3 cut(s)	137, 458, 624
Tru1I	TTAA	3 cut(s)	483, 578, 819
Tru9I	TTAA	3 cut(s)	483, 578, 819
TscAI	CASTG	1 cut(s)	41
TseI	GCWGC	3 cut(s)	602, 656, 752
TspDTI	ATGAA	5 cut(s)	80, 99, 561, 830, 867
TspRI	CASTG	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	634
XceI	RCATGY	6 cut(s)	189, 215, 230, 598, 804, 863
XspI	CTAG	2 cut(s)	236, 524
Zsp2I	ATGCAT	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.