Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Forward (+)

77492769 .. 77494070

Gene Structure 1302 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049930.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCCGCCCCAACTTAATACAGCAGGAGAAGAGGAAGGGAAAAACAATCCTACCGACCTAGTTATAGGCAATCGCCATGGATCAGGGCTTTCCCAGCCCATACCCTCCAAAATTGAGGCCCAGATTGCAGTACCCAGTTCTGGGACTTGTAGTCAGATTGAGAAGTTGGTTTTGTATAAGAGGTATAGGGAAGCACTTGAAATGTTTGAGTTTTTGGAATCTAGAGGTGGCAAGTGTGGGAGCATTGATGATGCTCACTGTGTTTTTGATGAGATGCCGAAGAAGAATGCCATTATAGCAGGTTATGCACTTCATGGTTATAGTGAGGAAGCTTTGAGTATGTACTATGATATGCGTGATTCTGGTGCGCCGATGGACCATTTTACGTTTTCCATGATCATAAGAACATGTGCAAGGTTGGCGTCGTTAGAACATGCAAAGCAAGCACATGCAGGTCTAGTTCGTCATGGTTTTGGGTTGGATATAGTGGCAAACACATTGCTTGTGGACTTCTATAGCAAATGGGGGAGGATAGAAGATGCTCATCATGTTTTTGATCAGATGCCTAACAAGAATGTCATATCTTGGAATGCCTTGATTGCTGGATATGGTAACCATGGTCGGGGTGATGAGGCTGTTGAGATGTTTGAGAAGATGCTTCAAGAAGGAATGGTACCCAACCATGTTACTTTTCTTGCTGTCTTGTCTGCTTGCAGTCGTTCAAGTTTATCAGAACTTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

247

Amino Acids

27.24

Weight (kDa)

5.64

Isoelectric Point (pI)

45.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	96 - 139	2.1e-08	PPR repeat family
PPR_2	PF13041	191 - 239	1.4e-13	PPR repeat family
PPR_1	PF12854	192 - 219	1.6e-06	PPR repeat
PPR_3	PF13812	192 - 238	2.3e-06	Pentatricopeptide repeat domain
PPR	PF01535	194 - 223	1.9e-09	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	290, 443
Acc65I	GGTACC	1 cut(s)	673
AccB1I	GGYRCC	1 cut(s)	673
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	1 cut(s)	88
AcyI	GRCGYC	1 cut(s)	422
AfaI	GTAC	3 cut(s)	132, 344, 675
AfiI	CCNNNNNNNGG	3 cut(s)	140, 141, 622
AflIII	ACRYGT	1 cut(s)	407
AgsI	TTSAA	3 cut(s)	200, 662, 723
AhdI	GACNNNNNGTC	1 cut(s)	150
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
AlwI	GGATC	1 cut(s)	88
AoxI	GGCC	1 cut(s)	117
Asp718I	GGTACC	1 cut(s)	673
AspLEI	GCGC	1 cut(s)	370
AspS9I	GGNCC	2 cut(s)	118, 376
AsuHPI	GGTGA	1 cut(s)	638
AvaII	GGWCC	1 cut(s)	376
BanI	GGYRCC	1 cut(s)	673
BarI	GAAGNNNNNNTAC	2 cut(s)	657, 689
BccI	CCATC	1 cut(s)	367
BclI	TGATCA	2 cut(s)	396, 556
BfaI	CTAG	3 cut(s)	59, 222, 458
BfmI	CTRYAG	1 cut(s)	514
BfuAI	ACCTGC	2 cut(s)	290, 443
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme18I	GGWCC	1 cut(s)	376
BmeRI	GACNNNNNGTC	1 cut(s)	150
BmgT120I	GGNCC	2 cut(s)	118, 376
BmiI	GGNNCC	1 cut(s)	675
BmrI	ACTGGG	1 cut(s)	129
BmsI	GCATC	5 cut(s)	241, 264, 529, 552, 645
BmuI	ACTGGG	1 cut(s)	129
BsaBI	GATNNNNATC	1 cut(s)	543
BsaHI	GRCGYC	1 cut(s)	422
BsaJI	CCNNGG	2 cut(s)	76, 616
Bsc4I	CCNNNNNNNGG	3 cut(s)	140, 141, 622
Bse1I	ACTGG	1 cut(s)	135
Bse3DI	GCAATG	1 cut(s)	497
Bse8I	GATNNNNATC	1 cut(s)	543
BseDI	CCNNGG	2 cut(s)	76, 616
BseJI	GATNNNNATC	1 cut(s)	543
BseLI	CCNNNNNNNGG	3 cut(s)	140, 141, 622
BseMI	GCAATG	1 cut(s)	497
BseNI	ACTGG	1 cut(s)	135
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	119
BshNI	GGYRCC	1 cut(s)	673
BslFI	GGGAC	1 cut(s)	157
BslI	CCNNNNNNNGG	3 cut(s)	140, 141, 622
BsmFI	GGGAC	1 cut(s)	157
BsmI	GAATGC	2 cut(s)	292, 595
BsnI	GGCC	1 cut(s)	119
Bsp143I	GATC	3 cut(s)	80, 396, 556
Bsp19I	CCATGG	2 cut(s)	76, 616
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	1 cut(s)	119
BspLI	GGNNCC	1 cut(s)	675
BspMI	ACCTGC	2 cut(s)	290, 443
BspPI	GGATC	1 cut(s)	88
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	1 cut(s)	497
BsrI	ACTGG	1 cut(s)	135
BssECI	CCNNGG	2 cut(s)	76, 616
BssMI	GATC	3 cut(s)	80, 396, 556
BssNI	GRCGYC	1 cut(s)	422
BssT1I	CCWWGG	2 cut(s)	76, 616
Bst4CI	ACNGT	1 cut(s)	260
Bst6I	CTCTTC	1 cut(s)	24
BstACI	GRCGYC	1 cut(s)	422
BstAPI	GCANNNNNTGC	1 cut(s)	305
BstC8I	GCNNGC	2 cut(s)	444, 712
BstDSI	CCRYGG	2 cut(s)	76, 616
BstEII	GGTNACC	1 cut(s)	611
BstHHI	GCGC	1 cut(s)	370
BstKTI	GATC	3 cut(s)	83, 399, 559
BstMBI	GATC	3 cut(s)	80, 396, 556
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 125, 296, 305, 419, 443, 599
BstNSI	RCATGY	3 cut(s)	411, 437, 452
BstPI	GGTNACC	1 cut(s)	611
BstSFI	CTRYAG	1 cut(s)	514
BsuRI	GGCC	1 cut(s)	119
BtgI	CCRYGG	2 cut(s)	76, 616
BtsIMutI	CAGTG	1 cut(s)	256
BveI	ACCTGC	2 cut(s)	290, 443
Cac8I	GCNNGC	2 cut(s)	444, 712
CfoI	GCGC	1 cut(s)	370
Cfr13I	GGNCC	2 cut(s)	118, 376
CseI	GACGC	1 cut(s)	411
Csp6I	GTAC	3 cut(s)	131, 343, 674
CviJI	RGCY	5 cut(s)	88, 97, 119, 332, 635
CviKI_1	RGCY	5 cut(s)	88, 97, 119, 332, 635
CviQI	GTAC	3 cut(s)	131, 343, 674
DpnI	GATC	3 cut(s)	82, 398, 558
DpnII	GATC	3 cut(s)	80, 396, 556
DriI	GACNNNNNGTC	1 cut(s)	150
Eam1104I	CTCTTC	1 cut(s)	24
Eam1105I	GACNNNNNGTC	1 cut(s)	150
EarI	CTCTTC	1 cut(s)	24
Eco130I	CCWWGG	2 cut(s)	76, 616
Eco47I	GGWCC	1 cut(s)	376
Eco91I	GGTNACC	1 cut(s)	611
EcoO65I	GGTNACC	1 cut(s)	611
EcoT14I	CCWWGG	2 cut(s)	76, 616
ErhI	CCWWGG	2 cut(s)	76, 616
FaqI	GGGAC	1 cut(s)	157
FbaI	TGATCA	2 cut(s)	396, 556
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	3 cut(s)	59, 222, 458
GlaI	GCGC	1 cut(s)	369
GluI	GCNGC	1 cut(s)	5
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	119
HgaI	GACGC	1 cut(s)	411
HhaI	GCGC	1 cut(s)	370
Hin1I	GRCGYC	1 cut(s)	422
Hin6I	GCGC	1 cut(s)	368
HinP1I	GCGC	1 cut(s)	368
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	2 cut(s)	218, 359
HphI	GGTGA	1 cut(s)	638
Hpy166II	GTNNAC	1 cut(s)	508
Hpy188I	TCNGA	3 cut(s)	156, 561, 733
Hpy188III	TCNNGA	2 cut(s)	222, 662
Hpy8I	GTNNAC	1 cut(s)	508
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	2 cut(s)	29, 659
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4IV	ACGT	1 cut(s)	386
HpyCH4V	TGCA	6 cut(s)	128, 308, 413, 437, 452, 714
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 125, 296, 305, 419, 443, 599
HpySE526I	ACGT	1 cut(s)	386
Hsp92I	GRCGYC	1 cut(s)	422
HspAI	GCGC	1 cut(s)	368
KpnI	GGTACC	1 cut(s)	677
Ksp22I	TGATCA	2 cut(s)	396, 556
Kzo9I	GATC	3 cut(s)	80, 396, 556
LmnI	GCTCC	1 cut(s)	240
LweI	GCATC	5 cut(s)	241, 264, 529, 552, 645
MaeI	CTAG	3 cut(s)	59, 222, 458
MaeII	ACGT	1 cut(s)	386
MaeIII	GTNAC	2 cut(s)	611, 685
MalI	GATC	3 cut(s)	82, 398, 558
MboI	GATC	3 cut(s)	80, 396, 556
MboII	GAAGA	5 cut(s)	41, 292, 295, 548, 664
MluCI	AATT	1 cut(s)	111
MmeI	TCCRAC	1 cut(s)	459
MnlI	CCTC	8 cut(s)	25, 109, 115, 174, 218, 319, 522, 625
MseI	TTAA	1 cut(s)	15
Mva1269I	GAATGC	2 cut(s)	292, 595
MwoI	GCNNNNNNNGC	7 cut(s)	94, 125, 296, 305, 419, 443, 599
NcoI	CCATGG	2 cut(s)	76, 616
NdeII	GATC	3 cut(s)	80, 396, 556
NlaIV	GGNNCC	1 cut(s)	675
NspI	RCATGY	3 cut(s)	411, 437, 452
PciI	ACATGT	1 cut(s)	407
PctI	GAATGC	2 cut(s)	292, 595
PfeI	GAWTC	2 cut(s)	218, 359
PkrI	GCNGC	1 cut(s)	6
PscI	ACATGT	1 cut(s)	407
PspEI	GGTNACC	1 cut(s)	611
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	675
PspPI	GGNCC	2 cut(s)	118, 376
RsaI	GTAC	3 cut(s)	132, 344, 675
RsaNI	GTAC	3 cut(s)	131, 343, 674
SaqAI	TTAA	1 cut(s)	15
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	80, 396, 556
Sau96I	GGNCC	2 cut(s)	118, 376
SetI	ASST	8 cut(s)	60, 185, 229, 304, 334, 389, 419, 457
SfaNI	GCATC	5 cut(s)	241, 264, 529, 552, 645
SfcI	CTRYAG	1 cut(s)	514
SinI	GGWCC	1 cut(s)	376
Sse9I	AATT	1 cut(s)	111
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	3 cut(s)	59, 222, 458
StyI	CCWWGG	2 cut(s)	76, 616
TaaI	ACNGT	1 cut(s)	260
TaiI	ACGT	1 cut(s)	389
TasI	AATT	1 cut(s)	111
TatI	WGTACW	1 cut(s)	342
TauI	GCSGC	1 cut(s)	7
TfiI	GAWTC	2 cut(s)	218, 359
Tru1I	TTAA	1 cut(s)	15
Tru9I	TTAA	1 cut(s)	15
TscAI	CASTG	1 cut(s)	263
TspDTI	ATGAA	1 cut(s)	302
TspRI	CASTG	1 cut(s)	263
VpaK11BI	GGWCC	1 cut(s)	376
XbaI	TCTAGA	1 cut(s)	221
XceI	RCATGY	3 cut(s)	411, 437, 452
XspI	CTAG	3 cut(s)	59, 222, 458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.