Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0005465

Physical Location & Seq

Genomic Coordinates Reverse (-)

45273035 .. 45275164

Gene Structure 2130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013992

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1974 bp

ATGGAGGTTCCTCTGTTAAGGTACCAAAGCCTAGTGTTGGACCAGATTCAATGTAGCATTAGCTTCCCTTTGTCATTCTCAGATTCCAAGTTTTCCAAGCGGACATCTTTGTTTTCTGGCTGCTACTCTTTTTCCCTTAATAGACCAAAATGGAGGAGCCCATTTTCCCAAATTAGGTGTTGTTCTTATGTGGAGCAACAGCTGAAGCCCCGGCCCAGGCCCATTCCCGCCAAAATTGAGGTTGAGGAGGAACCAAAGGTCGCACCTTTGGAACCCGAAGAGGCCCAGATTGCAGTACCCAGTTCTGGGATTTGTAGTCAGATTGAGAAGTTGGTTTTGTATAAGAGGTATAGGGAAGCACTTGAAATGTTTGAGTTTTTGGAATCTAGAAGTGGGTATCAAGTGGGTGGTAGTACTTACGATGCTTTAGTGAGTGCTTGTATTAGCTTGAAATCGATTAGAGGAGTGAAGAGGGTGTTTGGTTATATGATTGGTAATGGGTTTGAGTTGGATCAGTACACGAGGAACAGGGTTTTGCTGATGCATGTGAAATGTGGGATGATGGTTGATGCACGCCACCTGTTTGAGGAAATGCCTGAGAGAAATTCGGTTTCGTGGAACACGATAATTGGGGGTCTTGTGGATTGTGGAGAGTTCATGGAGGCGTTCGGGTTGTTTTTGGATATGTGGGAGGAGTTTTCTGATGGGGAGTCGAGGATATTTGCCACAATGATTCGGGCTTCGGCTGGGTTGGGACTCATTTCTGCAGGGAGACAGTTTCATTCGTGTTGTGTGAAGATGGGTGTGGCGGCTGATATTTTCGTGTCTTGTGCGTTGATTGATATGTATAGCAAGTGTGGGAGCATTGATGACGCTCACTGTGTTTTTGATGAGATGCCGAAGAAGACAACTGTAGGATGGAATACCATTATAGCGGGTTATGCACTTCATGGTTATAGTGAGGAGGCTTTGAGTATGTACTATGATATGCGTGATTCTGGTGTGCCGATGGACCATTTTACGTTTTCCATGATCATAAGAACATGTGCAAGGTTGGCGTCGTTAGAACATGCAAAGCAAGCACATGCAGGTCTAGTTCGTCATGGTTTTGGGTTGGATATAGTGGCAAACACATCGCTCGTGGACTTCTATAGCAAATGGGGGAGGATAGAAGATGCTCGTCATGTTTTTGATCAGATGCCTGACAAGAATGTCATATCTTGGAATGCCTTGATTGCTGGATATGGTAACCATGGTCGGGGTGATGAGGCTGTTGAGATGTTTGAGAAGATGCTTCAGGAAGGAATGGTACCCAACCATGTTACTTTTCTTGCTGTCTTGTCTGCTTGCAGTCGTTCAGGTTTATCAGAACTTGGATGGGAGATTTTTGAATCAATGAGCAGGGATTACAAGATCAAGCCCCGTGCTATGCATTATGCTTGTATGATTGAATTGCTAGGACAAGAGGGCAATTTAGATGGAGCGTTTGCATTGATAAGAACTGCTCCCTTAAAGCCTACAGCAAACATGTGGGCTGCTCTGCTGACAGCTTGTCGAATCCATGAGAATTTAGAGCTTGGCAAAATTGCAGCCGAAGAGCTCTATGGGATGGAGCCTGAGAAGCTAAATGAAAGGCATGCCCAAACAAGAGAGATTTACGAGAAAGTGGACGAATTGATGGTCAGGATTAGGAGACGTGGTTACATCCCTGACAAGAAGCATCTACTTCCTGATGTGGATGAACACGAGCGCATCTCAGCTTACCACAGTGAGAAACTGGCTATAGCTTACGGCTTGATAAGTACGTCAGATGGGACGCCACTGCAAATTGTGCAAGGCCATCGCATTTGCGGAGACTGCCATTCCACAATCAAGTTAATAGCTAAGGTGACTGAACGGGAAATTGTAGTGAGGGACGCCAGCAGATTCCACCACTTCAAGAATGGGAGTTGTTCTTGTGGGAATTACTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

658

Amino Acids

74.2

Weight (kDa)

6.15

Isoelectric Point (pI)

43.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	303 - 351	9.9e-12	PPR repeat family
PPR	PF01535	307 - 335	2.3e-06	PPR repeat
PPR_2	PF13041	403 - 451	5.8e-13	PPR repeat family
PPR_1	PF12854	404 - 431	6e-06	PPR repeat
PPR_3	PF13812	404 - 450	9e-06	Pentatricopeptide repeat domain
PPR	PF01535	406 - 435	6.9e-09	PPR repeat
DYW_deaminase	PF14432	567 - 657	3e-36	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0005465)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G50390
fragaria_vesca	FvH4_6g48290
malus_domestica	MD00G1131200.v1.1 MD09G1052300.v1.1
prunus_persica	Prupe.3G266400_v2.0.a1
pyrus_communis	pycom111g04370 pycom17g04780
rosa_chinensis	RchiOBHm_Chr2g0168271 RchiOBHm_Chr6g0267531
rosa_laevigata	RLG00000013953 RLG00000013992
rosa_multiflora	Rmu_co8459511.1_g000001 Rmu_sc0003354.1_g000005 Rmu_sc0012005.1_g000008
rosa_roxburghii	Rroxscaffold_2G00083250 Rroxscaffold_7G00200650
rosa_rugosa	Rorug02G0532200 Rorug02G0532200 Rorug02G0532300 Rorug06G0033600
rosa_samantha	Rh2AG601300 Rh2BG614500 Rh2BG614600 Rh6AG155000 Rh6BG155600 Rh6DG140900
rosa_wichuraiana	Rw0G012800 Rw2G049930 Rw6G013300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1211
Acc36I	ACCTGC	1 cut(s)	1079
Acc65I	GGTACC	2 cut(s)	21, 1309
AccB1I	GGYRCC	2 cut(s)	21, 1309
AciI	CCGC	5 cut(s)	100, 228, 809, 935, 1851
AclWI	GGATC	1 cut(s)	519
AcsI	RAATTY	2 cut(s)	604, 1567
AcuI	CTGAAG	2 cut(s)	224, 1280
AcyI	GRCGYC	3 cut(s)	1058, 1817, 1917
AfaI	GTAC	7 cut(s)	23, 297, 415, 518, 980, 1311, 1804
AfiI	CCNNNNNNNGG	7 cut(s)	37, 174, 216, 305, 306, 586, 1258
AflIII	ACRYGT	2 cut(s)	1043, 1527
AgsI	TTSAA	6 cut(s)	50, 365, 451, 1391, 1451, 1939
AhdI	GACNNNNNGTC	1 cut(s)	1551
AjiI	CACGTC	1 cut(s)	1697
AjnI	CCWGG	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	1602
Alw26I	GTCTC	3 cut(s)	766, 1687, 1848
AlwI	GGATC	1 cut(s)	519
AoxI	GGCC	4 cut(s)	212, 218, 282, 1837
ApeKI	GCWGC	3 cut(s)	120, 1535, 1589
ApoI	RAATTY	2 cut(s)	604, 1567
ArsI	GACNNNNNNTTYG	2 cut(s)	1665, 1697
Asp718I	GGTACC	2 cut(s)	21, 1309
AspLEI	GCGC	1 cut(s)	1752
AspS9I	GGNCC	5 cut(s)	40, 213, 219, 283, 1012
AsuC2I	CCSGG	1 cut(s)	211
AsuHPI	GGTGA	2 cut(s)	1274, 1900
AvaII	GGWCC	2 cut(s)	40, 1012
BanI	GGYRCC	2 cut(s)	21, 1309
BanII	GRGCYC	2 cut(s)	161, 1602
BarI	GAAGNNNNNNTAC	2 cut(s)	1293, 1325
BauI	CACGAG	3 cut(s)	520, 1139, 1745
BbsI	GAAGAC	1 cut(s)	911
Bbv12I	GWGCWC	1 cut(s)	1602
BbvI	GCAGC	3 cut(s)	107, 1522, 1601
BceAI	ACGGC	1 cut(s)	1807
BcgI	CGANNNNNNTGC	4 cut(s)	1116, 1150, 1823, 1857
BciT130I	CCWGG	1 cut(s)	217
BclI	TGATCA	2 cut(s)	1032, 1192
BcnI	CCSGG	1 cut(s)	211
BcoDI	GTCTC	3 cut(s)	766, 1687, 1848
BfaI	CTAG	4 cut(s)	32, 387, 1094, 1457
BfmI	CTRYAG	5 cut(s)	765, 912, 1150, 1518, 1782
BfuAI	ACCTGC	1 cut(s)	1079
BisI	GCNGC	4 cut(s)	121, 810, 1536, 1590
BlsI	GCNGC	4 cut(s)	122, 811, 1537, 1591
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	211, 217
Bme18I	GGWCC	2 cut(s)	40, 1012
BmeRI	GACNNNNNGTC	1 cut(s)	1551
BmgBI	CACGTC	1 cut(s)	1697
BmgT120I	GGNCC	5 cut(s)	40, 213, 219, 283, 1012
BmiI	GGNNCC	7 cut(s)	9, 23, 158, 252, 273, 1311, 1614
BmrFI	CCNGG	2 cut(s)	211, 217
BmrI	ACTGGG	1 cut(s)	294
BmsI	GCATC	9 cut(s)	412, 531, 559, 885, 1165, 1188, 1281, 1729, 1761
BmuI	ACTGGG	1 cut(s)	294
BpiI	GAAGAC	1 cut(s)	911
BplI	GAGNNNNNCTC	2 cut(s)	1739, 1771
Bpu10I	CCTNAGC	1 cut(s)	1884
BpuMI	CCSGG	1 cut(s)	211
Bsa29I	ATCGAT	1 cut(s)	455
BsaHI	GRCGYC	3 cut(s)	1058, 1817, 1917
BsaJI	CCNNGG	3 cut(s)	209, 215, 1252
BsaXI	ACNNNNNCTCC	2 cut(s)	1684, 1714
Bsc4I	CCNNNNNNNGG	7 cut(s)	37, 174, 216, 305, 306, 586, 1258
Bse1I	ACTGG	3 cut(s)	300, 1782, 1973
BseBI	CCWGG	1 cut(s)	217
BseCI	ATCGAT	1 cut(s)	455
BseDI	CCNNGG	3 cut(s)	209, 215, 1252
BseGI	GGATG	6 cut(s)	564, 923, 1382, 1614, 1704, 1744
BseLI	CCNNNNNNNGG	7 cut(s)	37, 174, 216, 305, 306, 586, 1258
BseMII	CTCAG	4 cut(s)	93, 588, 1608, 1770
BseNI	ACTGG	3 cut(s)	300, 1782, 1973
BseRI	GAGGAG	5 cut(s)	169, 260, 477, 707, 977
BseXI	GCAGC	3 cut(s)	107, 1522, 1601
BseYI	CCCAGC	1 cut(s)	746
BshFI	GGCC	4 cut(s)	214, 220, 284, 1839
BshNI	GGYRCC	2 cut(s)	21, 1309
BshVI	ATCGAT	1 cut(s)	455
BsiHKAI	GWGCWC	1 cut(s)	1602
BsiSI	CCGG	1 cut(s)	211
BslFI	GGGAC	3 cut(s)	768, 1828, 1928
BslI	CCNNNNNNNGG	7 cut(s)	37, 174, 216, 305, 306, 586, 1258
BsmAI	GTCTC	3 cut(s)	766, 1687, 1848
BsmBI	CGTCTC	1 cut(s)	1687
BsmFI	GGGAC	3 cut(s)	768, 1828, 1928
BsmI	GAATGC	1 cut(s)	1231
BsnI	GGCC	4 cut(s)	214, 220, 284, 1839
Bsp1286I	GDGCHC	2 cut(s)	161, 1602
Bsp143I	GATC	4 cut(s)	511, 1032, 1192, 1413
Bsp19I	CCATGG	1 cut(s)	1252
BspACI	CCGC	5 cut(s)	100, 228, 809, 935, 1851
BspANI	GGCC	4 cut(s)	214, 220, 284, 1839
BspCNI	CTCAG	4 cut(s)	92, 589, 1609, 1769
BspDI	ATCGAT	1 cut(s)	455
BspLI	GGNNCC	7 cut(s)	9, 23, 158, 252, 273, 1311, 1614
BspMAI	CTGCAG	1 cut(s)	769
BspMI	ACCTGC	1 cut(s)	1079
BspPI	GGATC	1 cut(s)	519
BspQI	GCTCTTC	1 cut(s)	1590
BspT107I	GGYRCC	2 cut(s)	21, 1309
BsrI	ACTGG	3 cut(s)	300, 1782, 1973
BssECI	CCNNGG	3 cut(s)	209, 215, 1252
BssMI	GATC	4 cut(s)	511, 1032, 1192, 1413
BssNI	GRCGYC	3 cut(s)	1058, 1817, 1917
BssSI	CACGAG	3 cut(s)	520, 1139, 1745
BssT1I	CCWWGG	1 cut(s)	1252
Bst2BI	CACGAG	3 cut(s)	520, 1139, 1745
Bst2UI	CCWGG	1 cut(s)	217
Bst4CI	ACNGT	4 cut(s)	777, 881, 913, 1769
Bst6I	CTCTTC	3 cut(s)	273, 464, 1590
BstACI	GRCGYC	3 cut(s)	1058, 1817, 1917
BstAPI	GCANNNNNTGC	1 cut(s)	1831
BstC8I	GCNNGC	5 cut(s)	574, 1080, 1348, 1638, 1921
BstDEI	CTNAG	5 cut(s)	79, 597, 1617, 1756, 1884
BstDSI	CCRYGG	1 cut(s)	1252
BstEII	GGTNACC	1 cut(s)	1247
BstENI	CCTNNNNNAGG	1 cut(s)	584
BstF5I	GGATG	6 cut(s)	564, 923, 1382, 1614, 1704, 1744
BstHHI	GCGC	1 cut(s)	1752
BstKTI	GATC	4 cut(s)	514, 1035, 1195, 1416
BstMAI	GTCTC	3 cut(s)	766, 1687, 1848
BstMBI	GATC	4 cut(s)	511, 1032, 1192, 1413
BstMWI	GCNNNNNNNGC	8 cut(s)	290, 941, 1055, 1079, 1235, 1621, 1831, 1857
BstNI	CCWGG	1 cut(s)	217
BstNSI	RCATGY	6 cut(s)	548, 1047, 1073, 1088, 1531, 1640
BstPI	GGTNACC	1 cut(s)	1247
BstSCI	CCNGG	2 cut(s)	209, 215
BstSFI	CTRYAG	5 cut(s)	765, 912, 1150, 1518, 1782
BstV1I	GCAGC	3 cut(s)	107, 1522, 1601
BstV2I	GAAGAC	1 cut(s)	911
Bsu15I	ATCGAT	1 cut(s)	455
BsuRI	GGCC	4 cut(s)	214, 220, 284, 1839
BsuTUI	ATCGAT	1 cut(s)	455
BtgI	CCRYGG	1 cut(s)	1252
BtgZI	GCGATG	2 cut(s)	1119, 1826
BtrI	CACGTC	1 cut(s)	1697
BtsCI	GGATG	6 cut(s)	564, 923, 1382, 1614, 1704, 1744
BtsI	GCAGTG	1 cut(s)	1820
BtsIMutI	CAGTG	3 cut(s)	877, 1774, 1820
BveI	ACCTGC	1 cut(s)	1079
Cac8I	GCNNGC	5 cut(s)	574, 1080, 1348, 1638, 1921
CfoI	GCGC	1 cut(s)	1752
Cfr13I	GGNCC	5 cut(s)	40, 213, 219, 283, 1012
ClaI	ATCGAT	1 cut(s)	455
CseI	GACGC	4 cut(s)	881, 1047, 1825, 1925
Csp6I	GTAC	7 cut(s)	22, 296, 414, 517, 979, 1310, 1803
CviQI	GTAC	7 cut(s)	22, 296, 414, 517, 979, 1310, 1803
DdeI	CTNAG	5 cut(s)	79, 597, 1617, 1756, 1884
DpnI	GATC	4 cut(s)	513, 1034, 1194, 1415
DpnII	GATC	4 cut(s)	511, 1032, 1192, 1413
DrdI	GACNNNNNNGTC	1 cut(s)	1211
DriI	GACNNNNNGTC	1 cut(s)	1551
DseDI	GACNNNNNNGTC	1 cut(s)	1211
Eam1104I	CTCTTC	3 cut(s)	273, 464, 1590
Eam1105I	GACNNNNNGTC	1 cut(s)	1551
EarI	CTCTTC	3 cut(s)	273, 464, 1590
Ecl136II	GAGCTC	1 cut(s)	1600
Eco130I	CCWWGG	1 cut(s)	1252
Eco24I	GRGCYC	2 cut(s)	161, 1602
Eco47I	GGWCC	2 cut(s)	40, 1012
Eco53kI	GAGCTC	1 cut(s)	1600
Eco57I	CTGAAG	2 cut(s)	224, 1280
Eco91I	GGTNACC	1 cut(s)	1247
EcoICRI	GAGCTC	1 cut(s)	1600
EcoNI	CCTNNNNNAGG	1 cut(s)	584
EcoO65I	GGTNACC	1 cut(s)	1247
EcoRII	CCWGG	1 cut(s)	215
EcoT14I	CCWWGG	1 cut(s)	1252
EcoT22I	ATGCAT	2 cut(s)	546, 1434
EcoT38I	GRGCYC	2 cut(s)	161, 1602
ErhI	CCWWGG	1 cut(s)	1252
Esp3I	CGTCTC	1 cut(s)	1687
FaqI	GGGAC	3 cut(s)	768, 1828, 1928
FauI	CCCGC	2 cut(s)	235, 928
FbaI	TGATCA	2 cut(s)	1032, 1192
Fnu4HI	GCNGC	4 cut(s)	121, 810, 1536, 1590
FokI	GGATG	6 cut(s)	571, 930, 1389, 1621, 1691, 1751
FriOI	GRGCYC	2 cut(s)	161, 1602
Fsp4HI	GCNGC	4 cut(s)	121, 810, 1536, 1590
FspBI	CTAG	4 cut(s)	32, 387, 1094, 1457
GlaI	GCGC	1 cut(s)	1751
GluI	GCNGC	4 cut(s)	121, 810, 1536, 1590
GsaI	CCCAGC	1 cut(s)	750
HaeIII	GGCC	4 cut(s)	214, 220, 284, 1839
HapII	CCGG	1 cut(s)	211
HgaI	GACGC	4 cut(s)	881, 1047, 1825, 1925
HhaI	GCGC	1 cut(s)	1752
Hin1I	GRCGYC	3 cut(s)	1058, 1817, 1917
Hin6I	GCGC	1 cut(s)	1750
HinP1I	GCGC	1 cut(s)	1750
HpaII	CCGG	1 cut(s)	211
HphI	GGTGA	2 cut(s)	1274, 1900
Hpy166II	GTNNAC	3 cut(s)	519, 1144, 1669
Hpy188I	TCNGA	6 cut(s)	82, 321, 703, 1197, 1369, 1810
Hpy188III	TCNNGA	5 cut(s)	387, 1298, 1684, 1730, 1939
Hpy8I	GTNNAC	3 cut(s)	519, 1144, 1669
Hpy99I	CGWCG	1 cut(s)	1063
HpyAV	CCTTC	1 cut(s)	1295
HpyCH4III	ACNGT	4 cut(s)	777, 881, 913, 1769
HpyCH4IV	ACGT	3 cut(s)	1022, 1696, 1805
HpyF10VI	GCNNNNNNNGC	8 cut(s)	290, 941, 1055, 1079, 1235, 1621, 1831, 1857
HpyF3I	CTNAG	5 cut(s)	79, 597, 1617, 1756, 1884
HpySE526I	ACGT	3 cut(s)	1022, 1696, 1805
Hsp92I	GRCGYC	3 cut(s)	1058, 1817, 1917
HspAI	GCGC	1 cut(s)	1750
KpnI	GGTACC	2 cut(s)	25, 1313
Ksp22I	TGATCA	2 cut(s)	1032, 1192
Kzo9I	GATC	4 cut(s)	511, 1032, 1192, 1413
LguI	GCTCTTC	1 cut(s)	1590
LmnI	GCTCC	6 cut(s)	156, 193, 861, 1481, 1510, 1612
Lsp1109I	GCAGC	3 cut(s)	107, 1522, 1601
LweI	GCATC	9 cut(s)	412, 531, 559, 885, 1165, 1188, 1281, 1729, 1761
MaeI	CTAG	4 cut(s)	32, 387, 1094, 1457
MaeII	ACGT	3 cut(s)	1022, 1696, 1805
MaeIII	GTNAC	4 cut(s)	1247, 1321, 1700, 1888
MalI	GATC	4 cut(s)	513, 1034, 1194, 1415
MboI	GATC	4 cut(s)	511, 1032, 1192, 1413
MboII	GAAGA	8 cut(s)	290, 481, 808, 913, 916, 1184, 1300, 1607
MhlI	GDGCHC	2 cut(s)	161, 1602
MlyI	GAGTC	2 cut(s)	719, 750
MmeI	TCCRAC	3 cut(s)	18, 489, 1095
Mph1103I	ATGCAT	2 cut(s)	546, 1434
MseI	TTAA	4 cut(s)	17, 138, 1511, 1877
MspA1I	CMGCKG	1 cut(s)	202
MspI	CCGG	1 cut(s)	211
MspR9I	CCNGG	2 cut(s)	211, 217
Mva1269I	GAATGC	1 cut(s)	1231
MvaI	CCWGG	1 cut(s)	217
MwoI	GCNNNNNNNGC	8 cut(s)	290, 941, 1055, 1079, 1235, 1621, 1831, 1857
NciI	CCSGG	1 cut(s)	211
NcoI	CCATGG	1 cut(s)	1252
NdeII	GATC	4 cut(s)	511, 1032, 1192, 1413
NlaIV	GGNNCC	7 cut(s)	9, 23, 158, 252, 273, 1311, 1614
NmuCI	GTSAC	1 cut(s)	1888
NsiI	ATGCAT	2 cut(s)	546, 1434
NspI	RCATGY	6 cut(s)	548, 1047, 1073, 1088, 1531, 1640
PaeI	GCATGC	1 cut(s)	1640
PciI	ACATGT	2 cut(s)	1043, 1527
PciSI	GCTCTTC	1 cut(s)	1590
PcsI	WCGNNNNNNNCGW	1 cut(s)	620
PctI	GAATGC	1 cut(s)	1231
PfeI	GAWTC	8 cut(s)	46, 83, 383, 733, 995, 1391, 1557, 1926
PkrI	GCNGC	4 cut(s)	122, 811, 1537, 1591
PleI	GAGTC	2 cut(s)	718, 750
PpsI	GAGTC	2 cut(s)	718, 750
PscI	ACATGT	2 cut(s)	1043, 1527
Psp124BI	GAGCTC	1 cut(s)	1602
Psp6I	CCWGG	1 cut(s)	215
PspEI	GGTNACC	1 cut(s)	1247
PspFI	CCCAGC	1 cut(s)	746
PspGI	CCWGG	1 cut(s)	215
PspN4I	GGNNCC	7 cut(s)	9, 23, 158, 252, 273, 1311, 1614
PspPI	GGNCC	5 cut(s)	40, 213, 219, 283, 1012
PstI	CTGCAG	1 cut(s)	769
PvuII	CAGCTG	1 cut(s)	202
RsaI	GTAC	7 cut(s)	23, 297, 415, 518, 980, 1311, 1804
RsaNI	GTAC	7 cut(s)	22, 296, 414, 517, 979, 1310, 1803
SacI	GAGCTC	1 cut(s)	1602
SapI	GCTCTTC	1 cut(s)	1590
SaqAI	TTAA	4 cut(s)	17, 138, 1511, 1877
SatI	GCNGC	4 cut(s)	121, 810, 1536, 1590
Sau3AI	GATC	4 cut(s)	511, 1032, 1192, 1413
Sau96I	GGNCC	5 cut(s)	40, 213, 219, 283, 1012
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	2 cut(s)	719, 750
ScrFI	CCNGG	2 cut(s)	211, 217
SduI	GDGCHC	2 cut(s)	161, 1602
SfaNI	GCATC	9 cut(s)	412, 531, 559, 885, 1165, 1188, 1281, 1729, 1761
SfcI	CTRYAG	5 cut(s)	765, 912, 1150, 1518, 1782
SinI	GGWCC	2 cut(s)	40, 1012
SphI	GCATGC	1 cut(s)	1640
SsiI	CCGC	5 cut(s)	100, 228, 809, 935, 1851
SspMI	CTAG	4 cut(s)	32, 387, 1094, 1457
SstI	GAGCTC	1 cut(s)	1602
StyD4I	CCNGG	2 cut(s)	209, 215
StyI	CCWWGG	1 cut(s)	1252
TaaI	ACNGT	4 cut(s)	777, 881, 913, 1769
TaiI	ACGT	3 cut(s)	1025, 1699, 1808
TaqI	TCGA	3 cut(s)	455, 713, 1555
TatI	WGTACW	3 cut(s)	413, 516, 978
TauI	GCSGC	1 cut(s)	812
TfiI	GAWTC	8 cut(s)	46, 83, 383, 733, 995, 1391, 1557, 1926
Tru1I	TTAA	4 cut(s)	17, 138, 1511, 1877
Tru9I	TTAA	4 cut(s)	17, 138, 1511, 1877
TscAI	CASTG	3 cut(s)	884, 1774, 1827
TseFI	GTSAC	1 cut(s)	1888
TseI	GCWGC	3 cut(s)	120, 1535, 1589
Tsp45I	GTSAC	1 cut(s)	1888
TspDTI	ATGAA	5 cut(s)	646, 770, 938, 1644, 1755
TspRI	CASTG	3 cut(s)	884, 1774, 1827
VpaK11BI	GGWCC	2 cut(s)	40, 1012
XagI	CCTNNNNNAGG	1 cut(s)	584
XapI	RAATTY	2 cut(s)	604, 1567
XbaI	TCTAGA	1 cut(s)	386
XceI	RCATGY	6 cut(s)	548, 1047, 1073, 1088, 1531, 1640
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1940
XspI	CTAG	4 cut(s)	32, 387, 1094, 1457
ZrmI	AGTACT	1 cut(s)	415
Zsp2I	ATGCAT	2 cut(s)	546, 1434

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.