FvH4_6g53690

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003993
Physical Location & Seq
Forward (+)
39320531 .. 39322971
2441 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g53690.t1

Sequence Viewer

Length: 999 bp
ATGGAGGTATGGAGAGGCTTGTTGGTGCTTTTGGGTTTGTATTTGATGATGATTGGTATGCAGGGGAGGAGATCGGAAGCACGTTTAGTAGAAAACTTCTATCGCTCTAGTTGTCCAAATGTTCAGGCCATAGTGAAGCAGGCAGTCTCTACGAAACTCAGCCAAACCCCTATAACGATTCCGGGTACTCTGCGGCTGTTTTTCCATGATTGCTTTATTGAGGGATGCGACGCCTCGATAATGATTCATTCACCAAATGGGGATGCAGAGAAAGATTACTCGGATAATCTTTCTTTGGCTGGAGATGGTTTTGACACCGTAGTCAAGGCTAAGCAAGCAGTCGAAGCACAATGCCCCGGTGTTGTCTCTTGTGCTGACATCTTGGCACTTGCTGCCCGTGATGTTGTAGTCCTAGCCGGAGGCCCTGCATTTAACGTAGAATTGGGGCGTCGAGATGGACTGGTCTCGAAGGCCTCTCGGGTCCCTGGAAATTTGCCTGAACCGTTTTTTAATCTGAAGCAACTCAACACCATGTTTGCCAAGCATAACCTTTCCCAAACTGATGTTATTGCCCTGTCTGGAGCACATACACTAGGCCTTTCGCACTGCAGCCGTTTTGCAAACCGTTTGTACTCGTTTTCAAATGCCTCTGCCGTTGATCCTTCATTGGATCCCGGCTACGCGAAGCAGCTGATGTCAGGCTGCCCGCGAGATGTTGACAACCTAGTCCACCTAGACCCTCAAACTCCAGACACATTTGACAACGCATATTACCAGAACTTGCTTGCAGGGAAGGGTTTGTTGACTTCAGATGAGGTTCTGTTCTCTGACTCTGCTTCTAAGCCTACTGTCATTGATTTTGCTAAGAACCCAGGTAACTTCAATGGAGCCTTCATCGCTGCAATGAGGAAGCTTGGCAGGGTTGGTGTGAAGACCGGTAACCAAGGAGAGATAAGGAAAGACTGCGCCGCCTTCAATAATGATCACGGTGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

35.78

Weight (kDa)

6.16

Isoelectric Point (pI)

30.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 290 2.2e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 320, 725
AccII CGCG 2 cut(s) 683, 709
AciI CCGC 3 cut(s) 193, 707, 969
AclWI GGATC 3 cut(s) 653, 665, 678
AcsI RAATTY 1 cut(s) 490
AcuI CTGAAG 2 cut(s) 536, 792
AcyI GRCGYC 2 cut(s) 231, 448
AfaI GTAC 2 cut(s) 187, 632
AgeI ACCGGT 1 cut(s) 935
AgsI TTSAA 3 cut(s) 642, 883, 976
AjnI CCWGG 2 cut(s) 484, 871
AluBI AGCT 3 cut(s) 691, 913, 996
AluI AGCT 3 cut(s) 691, 913, 996
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 3 cut(s) 151, 370, 469
AlwI GGATC 3 cut(s) 653, 665, 678
Ama87I CYCGRG 1 cut(s) 477
AoxI GGCC 4 cut(s) 126, 421, 471, 595
ApeKI GCWGC 5 cut(s) 392, 609, 688, 702, 899
ApoI RAATTY 1 cut(s) 490
AsiGI ACCGGT 1 cut(s) 935
AspLEI GCGC 1 cut(s) 968
AspS9I GGNCC 2 cut(s) 422, 481
AsuC2I CCSGG 3 cut(s) 183, 357, 675
AsuHPI GGTGA 1 cut(s) 243
AvaI CYCGRG 1 cut(s) 477
AvaII GGWCC 1 cut(s) 481
BamHI GGATCC 1 cut(s) 670
BbsI GAAGAC 1 cut(s) 938
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 5 cut(s) 379, 621, 689, 700, 886
BccI CCATC 2 cut(s) 299, 449
BceAI ACGGC 2 cut(s) 597, 638
BciT130I CCWGG 2 cut(s) 486, 873
BclI TGATCA 1 cut(s) 982
BcnI CCSGG 3 cut(s) 183, 357, 675
BcoDI GTCTC 3 cut(s) 151, 370, 469
BfaI CTAG 6 cut(s) 108, 413, 593, 725, 734, 997
BfmI CTRYAG 1 cut(s) 607
BisI GCNGC 7 cut(s) 194, 393, 610, 689, 703, 900, 969
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 7 cut(s) 195, 394, 611, 690, 704, 901, 970
Bme1390I CCNGG 5 cut(s) 183, 357, 486, 675, 873
Bme18I GGWCC 1 cut(s) 481
BmeT110I CYCGRG 1 cut(s) 477
BmgT120I GGNCC 2 cut(s) 422, 481
BmiI GGNNCC 4 cut(s) 482, 483, 672, 889
BmrFI CCNGG 5 cut(s) 183, 357, 486, 675, 873
BmsI GCATC 2 cut(s) 215, 253
BpiI GAAGAC 1 cut(s) 938
BpmI CTGGAG 3 cut(s) 321, 600, 732
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 3 cut(s) 183, 357, 675
BsaHI GRCGYC 2 cut(s) 231, 448
BsaI GGTCTC 1 cut(s) 469
BsaJI CCNNGG 4 cut(s) 355, 484, 871, 943
BsaWI WCCGGW 1 cut(s) 935
Bse118I RCCGGY 1 cut(s) 935
Bse1I ACTGG 1 cut(s) 465
Bse3DI GCAATG 1 cut(s) 909
BseBI CCWGG 2 cut(s) 486, 873
BseDI CCNNGG 4 cut(s) 355, 484, 871, 943
BseGI GGATG 2 cut(s) 230, 268
BseMI GCAATG 1 cut(s) 909
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 465
BseRI GAGGAG 1 cut(s) 82
BseXI GCAGC 5 cut(s) 379, 621, 689, 700, 886
Bsh1236I CGCG 2 cut(s) 683, 709
BshFI GGCC 4 cut(s) 128, 423, 473, 597
BshTI ACCGGT 1 cut(s) 935
BsiHKAI GWGCWC 1 cut(s) 586
BsiHKCI CYCGRG 1 cut(s) 477
BsiSI CCGG 5 cut(s) 182, 357, 417, 675, 936
BslFI GGGAC 1 cut(s) 467
BsmAI GTCTC 3 cut(s) 151, 370, 469
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 4 cut(s) 128, 423, 473, 597
Bso31I GGTCTC 1 cut(s) 469
BsoBI CYCGRG 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 586
Bsp143I GATC 4 cut(s) 71, 658, 670, 982
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 193, 707, 969
BspANI GGCC 4 cut(s) 128, 423, 473, 597
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 2 cut(s) 683, 709
BspLI GGNNCC 4 cut(s) 482, 483, 672, 889
BspMAI CTGCAG 1 cut(s) 611
BspPI GGATC 3 cut(s) 653, 665, 678
BspTNI GGTCTC 1 cut(s) 469
BsrDI GCAATG 1 cut(s) 909
BsrFI RCCGGY 1 cut(s) 935
BsrI ACTGG 1 cut(s) 465
BssAI RCCGGY 1 cut(s) 935
BssECI CCNNGG 4 cut(s) 355, 484, 871, 943
BssMI GATC 4 cut(s) 71, 658, 670, 982
BssNI GRCGYC 2 cut(s) 231, 448
BssT1I CCWWGG 1 cut(s) 943
Bst2UI CCWGG 2 cut(s) 486, 873
Bst4CI ACNGT 5 cut(s) 319, 504, 626, 850, 989
BstACI GRCGYC 2 cut(s) 231, 448
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 141, 336, 707, 786
BstDEI CTNAG 4 cut(s) 158, 330, 840, 864
BstEII GGTNACC 1 cut(s) 938
BstF5I GGATG 2 cut(s) 230, 268
BstFNI CGCG 2 cut(s) 683, 709
BstHHI GCGC 1 cut(s) 968
BstKTI GATC 4 cut(s) 74, 661, 673, 985
BstMAI GTCTC 3 cut(s) 151, 370, 469
BstMBI GATC 4 cut(s) 71, 658, 670, 982
BstMWI GCNNNNNNNGC 4 cut(s) 335, 344, 392, 896
BstNI CCWGG 2 cut(s) 486, 873
BstPI GGTNACC 1 cut(s) 938
BstSCI CCNGG 5 cut(s) 181, 355, 484, 673, 871
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 2 cut(s) 683, 709
BstV1I GCAGC 5 cut(s) 379, 621, 689, 700, 886
BstV2I GAAGAC 1 cut(s) 938
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 4 cut(s) 128, 423, 473, 597
BtgZI GCGATG 1 cut(s) 880
BtsCI GGATG 2 cut(s) 230, 268
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 1 cut(s) 604
Cac8I GCNNGC 4 cut(s) 141, 336, 707, 786
CfoI GCGC 1 cut(s) 968
Cfr10I RCCGGY 1 cut(s) 935
Cfr13I GGNCC 2 cut(s) 422, 481
CseI GACGC 2 cut(s) 239, 437
Csp6I GTAC 2 cut(s) 186, 631
CspAI ACCGGT 1 cut(s) 935
CviAII CATG 2 cut(s) 206, 532
CviQI GTAC 2 cut(s) 186, 631
DdeI CTNAG 4 cut(s) 158, 330, 840, 864
DpnI GATC 4 cut(s) 73, 660, 672, 984
DpnII GATC 4 cut(s) 71, 658, 670, 982
DrdI GACNNNNNNGTC 2 cut(s) 320, 725
DseDI GACNNNNNNGTC 2 cut(s) 320, 725
Eco130I CCWWGG 1 cut(s) 943
Eco147I AGGCCT 2 cut(s) 473, 597
Eco31I GGTCTC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 481
Eco57I CTGAAG 2 cut(s) 536, 792
Eco88I CYCGRG 1 cut(s) 477
Eco91I GGTNACC 1 cut(s) 938
EcoO109I RGGNCCY 2 cut(s) 422, 481
EcoO65I GGTNACC 1 cut(s) 938
EcoRII CCWGG 2 cut(s) 484, 871
EcoT14I CCWWGG 1 cut(s) 943
ErhI CCWWGG 1 cut(s) 943
FaeI CATG 2 cut(s) 209, 535
FaiI YATR 9 cut(s) 10, 59, 131, 173, 207, 533, 546, 588, 769
FaqI GGGAC 1 cut(s) 467
FatI CATG 2 cut(s) 205, 531
FauI CCCGC 1 cut(s) 714
FbaI TGATCA 1 cut(s) 982
Fnu4HI GCNGC 7 cut(s) 194, 393, 610, 689, 703, 900, 969
FokI GGATG 2 cut(s) 237, 275
Fsp4HI GCNGC 7 cut(s) 194, 393, 610, 689, 703, 900, 969
FspBI CTAG 6 cut(s) 108, 413, 593, 725, 734, 997
GlaI GCGC 1 cut(s) 967
GluI GCNGC 7 cut(s) 194, 393, 610, 689, 703, 900, 969
GsuI CTGGAG 3 cut(s) 321, 600, 732
HaeIII GGCC 4 cut(s) 128, 423, 473, 597
HapII CCGG 5 cut(s) 182, 357, 417, 675, 936
HgaI GACGC 2 cut(s) 239, 437
HhaI GCGC 1 cut(s) 968
Hin1I GRCGYC 2 cut(s) 231, 448
Hin1II CATG 2 cut(s) 209, 535
Hin6I GCGC 1 cut(s) 966
HinP1I GCGC 1 cut(s) 966
HincII GTYRAC 2 cut(s) 718, 804
HindII GTYRAC 2 cut(s) 718, 804
HindIII AAGCTT 1 cut(s) 911
HinfI GANTC 3 cut(s) 178, 244, 830
HpaII CCGG 5 cut(s) 182, 357, 417, 675, 936
HphI GGTGA 1 cut(s) 243
Hpy166II GTNNAC 3 cut(s) 718, 730, 804
Hpy188I TCNGA 5 cut(s) 76, 283, 516, 811, 829
Hpy188III TCNNGA 4 cut(s) 452, 466, 579, 749
Hpy8I GTNNAC 3 cut(s) 718, 730, 804
Hpy99I CGWCG 2 cut(s) 233, 453
HpyAV CCTTC 5 cut(s) 463, 672, 787, 901, 982
HpyCH4III ACNGT 5 cut(s) 319, 504, 626, 850, 989
HpyCH4IV ACGT 2 cut(s) 82, 435
HpyCH4V TGCA 7 cut(s) 61, 266, 428, 609, 620, 788, 902
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 344, 392, 896
HpyF3I CTNAG 4 cut(s) 158, 330, 840, 864
HpySE526I ACGT 2 cut(s) 82, 435
Hsp92I GRCGYC 2 cut(s) 231, 448
Hsp92II CATG 2 cut(s) 209, 535
HspAI GCGC 1 cut(s) 966
KflI GGGWCCC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 982
Kzo9I GATC 4 cut(s) 71, 658, 670, 982
LmnI GCTCC 2 cut(s) 581, 887
Lsp1109I GCAGC 5 cut(s) 379, 621, 689, 700, 886
LweI GCATC 2 cut(s) 215, 253
MaeI CTAG 6 cut(s) 108, 413, 593, 725, 734, 997
MaeII ACGT 2 cut(s) 82, 435
MaeIII GTNAC 2 cut(s) 875, 938
MalI GATC 4 cut(s) 73, 660, 672, 984
MboI GATC 4 cut(s) 71, 658, 670, 982
MboII GAAGA 1 cut(s) 943
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 2 cut(s) 440, 490
MlyI GAGTC 1 cut(s) 824
MseI TTAA 2 cut(s) 432, 510
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 5 cut(s) 182, 357, 417, 675, 936
MspR9I CCNGG 5 cut(s) 183, 357, 486, 675, 873
MvaI CCWGG 2 cut(s) 486, 873
MvnI CGCG 2 cut(s) 683, 709
MwoI GCNNNNNNNGC 4 cut(s) 335, 344, 392, 896
NciI CCSGG 3 cut(s) 183, 357, 675
NdeII GATC 4 cut(s) 71, 658, 670, 982
NlaIII CATG 2 cut(s) 209, 535
NlaIV GGNNCC 4 cut(s) 482, 483, 672, 889
PceI AGGCCT 2 cut(s) 473, 597
PfeI GAWTC 2 cut(s) 178, 244
PinAI ACCGGT 1 cut(s) 935
PkrI GCNGC 7 cut(s) 195, 394, 611, 690, 704, 901, 970
PleI GAGTC 1 cut(s) 824
PpsI GAGTC 1 cut(s) 824
PpuMI RGGWCCY 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 2 cut(s) 484, 871
PspEI GGTNACC 1 cut(s) 938
PspGI CCWGG 2 cut(s) 484, 871
PspN4I GGNNCC 4 cut(s) 482, 483, 672, 889
PspPI GGNCC 2 cut(s) 422, 481
PspPPI RGGWCCY 1 cut(s) 481
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 2 cut(s) 187, 632
RsaNI GTAC 2 cut(s) 186, 631
SaqAI TTAA 2 cut(s) 432, 510
SatI GCNGC 7 cut(s) 194, 393, 610, 689, 703, 900, 969
Sau3AI GATC 4 cut(s) 71, 658, 670, 982
Sau96I GGNCC 2 cut(s) 422, 481
SchI GAGTC 1 cut(s) 824
ScrFI CCNGG 5 cut(s) 183, 357, 486, 675, 873
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 2 cut(s) 215, 253
SfcI CTRYAG 1 cut(s) 607
SinI GGWCC 1 cut(s) 481
Sse9I AATT 2 cut(s) 440, 490
SseBI AGGCCT 2 cut(s) 473, 597
SsiI CCGC 3 cut(s) 193, 707, 969
SspMI CTAG 6 cut(s) 108, 413, 593, 725, 734, 997
StuI AGGCCT 2 cut(s) 473, 597
StyD4I CCNGG 5 cut(s) 181, 355, 484, 673, 871
StyI CCWWGG 1 cut(s) 943
TaaI ACNGT 5 cut(s) 319, 504, 626, 850, 989
TaiI ACGT 2 cut(s) 85, 438
TaqI TCGA 4 cut(s) 236, 342, 451, 467
TasI AATT 2 cut(s) 440, 490
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 196, 971
TfiI GAWTC 2 cut(s) 178, 244
Tru1I TTAA 2 cut(s) 432, 510
Tru9I TTAA 2 cut(s) 432, 510
TscAI CASTG 1 cut(s) 611
TseI GCWGC 5 cut(s) 392, 609, 688, 702, 899
TspDTI ATGAA 3 cut(s) 236, 654, 883
TspRI CASTG 1 cut(s) 611
VpaK11BI GGWCC 1 cut(s) 481
XapI RAATTY 1 cut(s) 490
XspI CTAG 6 cut(s) 108, 413, 593, 725, 734, 997
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.