Rmu_co8488167.1_g000001

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8488167.1
OG0003993
Physical Location & Seq
Forward (+)
50 .. 880
831 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8488167.1_g000001.1.cds

Sequence Viewer

Length: 831 bp
atgattgcttcatcaaatggggatgcagagaaggattattcagataatctttctttggccggagatggatttgacaccgtagtcaaggctaagcaagcagtcgaagcacaatgccctggcatcgtctcttgtgccgacattttggcactggctgcccgagatgttgtagtcctagtaagtctaattatcagtgtctttagtgtgaaagcttacgaaaaatgtactaatcataattttgtgcaggccggaggccctacgtttaatgtagaattggggcgtcgagatggactgatctcgaaagcctctcgggtccctggcaatttgcctgaatcattttttaacctgaagcaactcaacaccatgtttgccaaacacaacctttcccaaactgatgttattgcactgtcgggagcgcatacactaggcttttcgcactgcagccgctttgcaagccgtttgtactcattttcaaactcatctgccgttgacccttctttggatccaggctacgccaagcagctgatgtcaacttgcccgcgagatgtgggcaccagcatacctgtcaacctggacccaactccacaaacatttgacaatgcttattaccagaacttggttgcaaggaagggcttgttgacttcagatgaggttctgttctctgactctgcttctaagcctactgtcatagattttgccaacaaccctggtaacttcaatggagccttcatcgccgcaatgaggaagcttggcagggtcggtgtgaagactggtaatgaaggcgagataaggaaagactgcgctgcgttcaatcatgatcatggtgatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

276

Amino Acids

29.49

Weight (kDa)

6.06

Isoelectric Point (pI)

24.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 80
AccB1I GGYRCC 1 cut(s) 548
AccB7I CCANNNNNTGG 1 cut(s) 613
AccII CGCG 1 cut(s) 538
AciI CCGC 3 cut(s) 442, 536, 732
AclWI GGATC 2 cut(s) 494, 507
AcoI YGGCCR 1 cut(s) 57
AcuI CTGAAG 2 cut(s) 365, 624
AcyI GRCGYC 1 cut(s) 277
AfaI GTAC 2 cut(s) 223, 461
AfiI CCNNNNNNNGG 3 cut(s) 496, 613, 738
AgsI TTSAA 3 cut(s) 471, 715, 808
AjnI CCWGG 5 cut(s) 115, 313, 502, 567, 703
AluBI AGCT 4 cut(s) 209, 520, 745, 828
AluI AGCT 4 cut(s) 209, 520, 745, 828
Alw26I GTCTC 1 cut(s) 130
AlwI GGATC 2 cut(s) 494, 507
Ama87I CYCGRG 2 cut(s) 156, 306
AoxI GGCC 3 cut(s) 57, 243, 250
ApeKI GCWGC 4 cut(s) 152, 438, 517, 800
AspLEI GCGC 2 cut(s) 415, 800
AspS9I GGNCC 3 cut(s) 251, 310, 571
AvaI CYCGRG 2 cut(s) 156, 306
AvaII GGWCC 2 cut(s) 310, 571
BaeGI GKGCMC 1 cut(s) 551
BamHI GGATCC 1 cut(s) 499
BanI GGYRCC 1 cut(s) 548
BbsI GAAGAC 1 cut(s) 770
BbvI GCAGC 4 cut(s) 139, 450, 529, 787
BccI CCATC 2 cut(s) 59, 278
BceAI ACGGC 2 cut(s) 438, 467
BciT130I CCWGG 5 cut(s) 117, 315, 504, 569, 705
BclI TGATCA 1 cut(s) 814
BcoDI GTCTC 1 cut(s) 130
BfaI CTAG 3 cut(s) 173, 422, 829
BfmI CTRYAG 1 cut(s) 436
BisI GCNGC 6 cut(s) 153, 439, 442, 518, 732, 801
BlpI GCTNAGC 1 cut(s) 90
BlsI GCNGC 6 cut(s) 154, 440, 443, 519, 733, 802
Bme1390I CCNGG 5 cut(s) 117, 315, 504, 569, 705
Bme18I GGWCC 2 cut(s) 310, 571
BmeT110I CYCGRG 2 cut(s) 156, 306
BmgT120I GGNCC 3 cut(s) 251, 310, 571
BmiI GGNNCC 6 cut(s) 311, 312, 501, 550, 573, 721
BmrFI CCNGG 5 cut(s) 117, 315, 504, 569, 705
BmsI GCATC 2 cut(s) 13, 129
BpiI GAAGAC 1 cut(s) 770
Bpu1102I GCTNAGC 1 cut(s) 90
BsaHI GRCGYC 1 cut(s) 277
BsaJI CCNNGG 3 cut(s) 115, 313, 703
Bsc4I CCNNNNNNNGG 3 cut(s) 496, 613, 738
Bse1I ACTGG 2 cut(s) 153, 772
Bse3DI GCAATG 1 cut(s) 741
BseBI CCWGG 5 cut(s) 117, 315, 504, 569, 705
BseDI CCNNGG 3 cut(s) 115, 313, 703
BseGI GGATG 1 cut(s) 28
BseLI CCNNNNNNNGG 3 cut(s) 496, 613, 738
BseMI GCAATG 1 cut(s) 741
BseNI ACTGG 2 cut(s) 153, 772
BseSI GKGCMC 1 cut(s) 551
BseXI GCAGC 4 cut(s) 139, 450, 529, 787
BsgI GTGCAG 1 cut(s) 260
Bsh1236I CGCG 1 cut(s) 538
BshFI GGCC 3 cut(s) 59, 245, 252
BshNI GGYRCC 1 cut(s) 548
BsiHKCI CYCGRG 2 cut(s) 156, 306
BsiSI CCGG 2 cut(s) 60, 246
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 3 cut(s) 496, 613, 738
BsmAI GTCTC 1 cut(s) 130
BsmBI CGTCTC 1 cut(s) 130
BsmFI GGGAC 1 cut(s) 296
BsnI GGCC 3 cut(s) 59, 245, 252
BsoBI CYCGRG 2 cut(s) 156, 306
Bsp1286I GDGCHC 1 cut(s) 551
Bsp143I GATC 3 cut(s) 291, 499, 814
Bsp1720I GCTNAGC 1 cut(s) 90
BspACI CCGC 3 cut(s) 442, 536, 732
BspANI GGCC 3 cut(s) 59, 245, 252
BspFNI CGCG 1 cut(s) 538
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 6 cut(s) 311, 312, 501, 550, 573, 721
BspMAI CTGCAG 1 cut(s) 440
BspPI GGATC 2 cut(s) 494, 507
BspT107I GGYRCC 1 cut(s) 548
BsrDI GCAATG 1 cut(s) 741
BsrI ACTGG 2 cut(s) 153, 772
BssECI CCNNGG 3 cut(s) 115, 313, 703
BssMI GATC 3 cut(s) 291, 499, 814
BssNI GRCGYC 1 cut(s) 277
Bst2UI CCWGG 5 cut(s) 117, 315, 504, 569, 705
Bst4CI ACNGT 3 cut(s) 79, 405, 682
BstACI GRCGYC 1 cut(s) 277
BstAPI GCANNNNNTGC 1 cut(s) 152
BstC8I GCNNGC 4 cut(s) 96, 243, 451, 536
BstDEI CTNAG 2 cut(s) 90, 672
BstF5I GGATG 1 cut(s) 28
BstFNI CGCG 1 cut(s) 538
BstHHI GCGC 2 cut(s) 415, 800
BstKTI GATC 3 cut(s) 294, 502, 817
BstMAI GTCTC 1 cut(s) 130
BstMBI GATC 3 cut(s) 291, 499, 814
BstMWI GCNNNNNNNGC 5 cut(s) 95, 104, 152, 450, 728
BstNI CCWGG 5 cut(s) 117, 315, 504, 569, 705
BstSCI CCNGG 5 cut(s) 115, 313, 502, 567, 703
BstSFI CTRYAG 1 cut(s) 436
BstSLI GKGCMC 1 cut(s) 551
BstUI CGCG 1 cut(s) 538
BstV1I GCAGC 4 cut(s) 139, 450, 529, 787
BstV2I GAAGAC 1 cut(s) 770
BstX2I RGATCY 1 cut(s) 499
BstYI RGATCY 1 cut(s) 499
BsuRI GGCC 3 cut(s) 59, 245, 252
BtgZI GCGATG 1 cut(s) 712
BtsCI GGATG 1 cut(s) 28
BtsI GCAGTG 1 cut(s) 433
BtsIMutI CAGTG 4 cut(s) 146, 196, 401, 433
Cac8I GCNNGC 4 cut(s) 96, 243, 451, 536
CciI TCATGA 1 cut(s) 811
CfoI GCGC 2 cut(s) 415, 800
Cfr13I GGNCC 3 cut(s) 251, 310, 571
CseI GACGC 1 cut(s) 266
Csp6I GTAC 2 cut(s) 222, 460
CviAII CATG 3 cut(s) 361, 812, 818
CviQI GTAC 2 cut(s) 222, 460
DdeI CTNAG 2 cut(s) 90, 672
DpnI GATC 3 cut(s) 293, 501, 816
DpnII GATC 3 cut(s) 291, 499, 814
DrdI GACNNNNNNGTC 1 cut(s) 80
DseDI GACNNNNNNGTC 1 cut(s) 80
EaeI YGGCCR 1 cut(s) 57
Eco47I GGWCC 2 cut(s) 310, 571
Eco57I CTGAAG 2 cut(s) 365, 624
Eco88I CYCGRG 2 cut(s) 156, 306
EcoO109I RGGNCCY 2 cut(s) 251, 310
EcoRII CCWGG 5 cut(s) 115, 313, 502, 567, 703
Esp3I CGTCTC 1 cut(s) 130
FaeI CATG 3 cut(s) 364, 815, 821
FaiI YATR 7 cut(s) 231, 362, 417, 557, 686, 813, 819
FaqI GGGAC 1 cut(s) 296
FatI CATG 3 cut(s) 360, 811, 817
FauI CCCGC 1 cut(s) 543
FbaI TGATCA 1 cut(s) 814
Fnu4HI GCNGC 6 cut(s) 153, 439, 442, 518, 732, 801
FokI GGATG 1 cut(s) 35
Fsp4HI GCNGC 6 cut(s) 153, 439, 442, 518, 732, 801
FspBI CTAG 3 cut(s) 173, 422, 829
GlaI GCGC 2 cut(s) 414, 799
GluI GCNGC 6 cut(s) 153, 439, 442, 518, 732, 801
HaeIII GGCC 3 cut(s) 59, 245, 252
HapII CCGG 2 cut(s) 60, 246
HgaI GACGC 1 cut(s) 266
HhaI GCGC 2 cut(s) 415, 800
Hin1I GRCGYC 1 cut(s) 277
Hin1II CATG 3 cut(s) 364, 815, 821
Hin6I GCGC 2 cut(s) 413, 798
HinP1I GCGC 2 cut(s) 413, 798
HincII GTYRAC 4 cut(s) 487, 528, 565, 636
HindII GTYRAC 4 cut(s) 487, 528, 565, 636
HindIII AAGCTT 2 cut(s) 207, 743
HinfI GANTC 2 cut(s) 329, 662
HpaII CCGG 2 cut(s) 60, 246
Hpy166II GTNNAC 4 cut(s) 487, 528, 565, 636
Hpy188I TCNGA 3 cut(s) 43, 643, 661
Hpy188III TCNNGA 4 cut(s) 281, 295, 408, 812
Hpy8I GTNNAC 4 cut(s) 487, 528, 565, 636
Hpy99I CGWCG 1 cut(s) 282
HpyAV CCTTC 5 cut(s) 25, 501, 619, 733, 770
HpyCH4III ACNGT 3 cut(s) 79, 405, 682
HpyCH4IV ACGT 1 cut(s) 257
HpyCH4V TGCA 6 cut(s) 26, 241, 401, 438, 449, 620
HpyF10VI GCNNNNNNNGC 5 cut(s) 95, 104, 152, 450, 728
HpyF3I CTNAG 2 cut(s) 90, 672
HpySE526I ACGT 1 cut(s) 257
Hsp92I GRCGYC 1 cut(s) 277
Hsp92II CATG 3 cut(s) 364, 815, 821
HspAI GCGC 2 cut(s) 413, 798
KflI GGGWCCC 1 cut(s) 310
Ksp22I TGATCA 1 cut(s) 814
Kzo9I GATC 3 cut(s) 291, 499, 814
LmnI GCTCC 2 cut(s) 410, 719
Lsp1109I GCAGC 4 cut(s) 139, 450, 529, 787
LweI GCATC 2 cut(s) 13, 129
MaeI CTAG 3 cut(s) 173, 422, 829
MaeII ACGT 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 707
MalI GATC 3 cut(s) 293, 501, 816
MboI GATC 3 cut(s) 291, 499, 814
MboII GAAGA 1 cut(s) 775
MflI RGATCY 1 cut(s) 499
MhlI GDGCHC 1 cut(s) 551
MluCI AATT 4 cut(s) 183, 232, 269, 319
MlyI GAGTC 1 cut(s) 656
MnlI CCTC 4 cut(s) 242, 313, 640, 732
MseI TTAA 2 cut(s) 261, 339
MslI CAYNNNNRTG 1 cut(s) 816
MspA1I CMGCKG 1 cut(s) 520
MspI CCGG 2 cut(s) 60, 246
MspR9I CCNGG 5 cut(s) 117, 315, 504, 569, 705
MvaI CCWGG 5 cut(s) 117, 315, 504, 569, 705
MvnI CGCG 1 cut(s) 538
MwoI GCNNNNNNNGC 5 cut(s) 95, 104, 152, 450, 728
NdeII GATC 3 cut(s) 291, 499, 814
NlaIII CATG 3 cut(s) 364, 815, 821
NlaIV GGNNCC 6 cut(s) 311, 312, 501, 550, 573, 721
PagI TCATGA 1 cut(s) 811
PfeI GAWTC 1 cut(s) 329
PflMI CCANNNNNTGG 1 cut(s) 613
PkrI GCNGC 6 cut(s) 154, 440, 443, 519, 733, 802
PleI GAGTC 1 cut(s) 656
PpsI GAGTC 1 cut(s) 656
PpuMI RGGWCCY 1 cut(s) 310
Psp5II RGGWCCY 1 cut(s) 310
Psp6I CCWGG 5 cut(s) 115, 313, 502, 567, 703
PspGI CCWGG 5 cut(s) 115, 313, 502, 567, 703
PspN4I GGNNCC 6 cut(s) 311, 312, 501, 550, 573, 721
PspPI GGNCC 3 cut(s) 251, 310, 571
PspPPI RGGWCCY 1 cut(s) 310
PstI CTGCAG 1 cut(s) 440
PsuI RGATCY 1 cut(s) 499
PvuII CAGCTG 1 cut(s) 520
RsaI GTAC 2 cut(s) 223, 461
RsaNI GTAC 2 cut(s) 222, 460
RseI CAYNNNNRTG 1 cut(s) 816
SaqAI TTAA 2 cut(s) 261, 339
SatI GCNGC 6 cut(s) 153, 439, 442, 518, 732, 801
Sau3AI GATC 3 cut(s) 291, 499, 814
Sau96I GGNCC 3 cut(s) 251, 310, 571
SchI GAGTC 1 cut(s) 656
ScrFI CCNGG 5 cut(s) 117, 315, 504, 569, 705
SduI GDGCHC 1 cut(s) 551
SfaNI GCATC 2 cut(s) 13, 129
SfcI CTRYAG 1 cut(s) 436
SinI GGWCC 2 cut(s) 310, 571
SmiMI CAYNNNNRTG 1 cut(s) 816
Sse9I AATT 4 cut(s) 183, 232, 269, 319
SsiI CCGC 3 cut(s) 442, 536, 732
SspMI CTAG 3 cut(s) 173, 422, 829
StyD4I CCNGG 5 cut(s) 115, 313, 502, 567, 703
TaaI ACNGT 3 cut(s) 79, 405, 682
TaiI ACGT 1 cut(s) 260
TaqI TCGA 3 cut(s) 102, 280, 296
TasI AATT 4 cut(s) 183, 232, 269, 319
TatI WGTACW 2 cut(s) 221, 459
TauI GCSGC 2 cut(s) 444, 734
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 2 cut(s) 261, 339
Tru9I TTAA 2 cut(s) 261, 339
TscAI CASTG 4 cut(s) 153, 196, 408, 440
TseI GCWGC 4 cut(s) 152, 438, 517, 800
TspDTI ATGAA 2 cut(s) 715, 789
TspRI CASTG 4 cut(s) 153, 196, 408, 440
Van91I CCANNNNNTGG 1 cut(s) 613
VpaK11BI GGWCC 2 cut(s) 310, 571
XspI CTAG 3 cut(s) 173, 422, 829
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.