Rorug02G0587500

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0003993
Physical Location & Seq
Reverse (-)
71012329 .. 71015660
3332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0587500.1

Sequence Viewer

Length: 1539 bp
ATGTCGGAGGGGAGGGACCCGGCGATCAAGCTTTTCGGGAAGACGATTCCGCTGCCGGAGGTCCCGCCGTTGCTGAGAGAATCCACCGTCGCGGCGGCGGCGGAGGAGGAAGTCGTCGCGGCTCCGGATCCGGGTTCGGATGCTGACCGTGTTTCGTCTTCGTCCAACTCGTCCTCGCCTGGAGGAGGAGTCAATGATAATAAAGACGGTGAAGAAGAGAAAGAGGTCAATAAGGACACATTGGGAGAAAAAGCAATTCAGAATAAAGAGGGAGATGAAGTCCTACCTTTACCTTCTGAAGAGTTGATGAATCCAGACGCAGCATCAAGAATAGGTGAAAGTCCTAAAGCACCCGTTGACAAGGAGACTGCTGCACTCAAAACTTTCAAGGCCGAAGAAGAACAGAGCGAGACAAGTAATTCACAAGAAAAGACCCTGAAGAAGCCAGACAAAATTATTCCATGCCCCCGCTGTAATAGCATGGACACCAAGTTCTGTTACTACAACAACTACAATGTCAACCAACCCCGGCACTTCTGCAAAAACTGCCAGAGATATTGGACAGCTGGTGGGACTATGAGAAATGTGCCAGTGGGTGCTGGTCGTCGTAAGAATAAGAATACCCCTTCTCAGTATCGCCACATAACTGTCTCTGAAGCTCTCCCGAATGCTCGACCTGATGTTCTAAATGGAGTCCACCATCCTTCAGTACAATCTAATGGCACTGTCCTGACATTTTGCTCAGACACGCCCCTTTGCGAGTCAATGACCTCTGTTCTTCAGCTTGCTGATAAGAACGTACAGAACCGTACTCCCAATGGATTTCACAAACCAGAAGGATTAATTGTTCCAGCTTCTTATGGGGGCGGAGTAAATGGAGATGATCATTCGAATAGATCTACGGTCACAGATTCAAATTCAAAGGATGAGACATCCAAACCCGGGCCACAAGAGCAAGTTATGCAGAATTATCCTGGCTTCCCGCCTCAAATACCATGCTTTCCTGGTGCTCCTTGGCCTTACCCGTGGAACCCTGCTCAATGGAGCTCTCCAGTCAGTCCACCTGCTTTCTGCCCTCCAGGGTATCCTATGCCCTTTTACCCTGCAGCTGCTTATTGGGGTTGTGCTGTACAAGGCACTTGGAACATGCCTTGGCTTCCTCAGCCATCATCTCCAAACCAAACTGCTCCAAGTTCTGGTTCTAACTCTCCGACTTTGGGGAAACATTCGAGGGATGAGAACCCTCTGAAACAAACCAGCTCTGAGGAAGAGGAGACAACAAAAGAAAAGAATGCCGAGAGATGCCTTTGGATTCCGAAAACATTGAGGATTGATGACCCAGGAGAAGCAGCAAGAAGCTCTATATGGGCAACATTGGGGATTAAGAATGATAAAGCTGATTCGATTAGCAGTGGGGGACTCTTTAAGGCCTTCCGGTCAAAGGGTGATGAAAAGAATCACATAGCAGAAGCCTCTCCGGTCTTACAAGCCAATCCAGCTGCATTATCTAGGTCACTTAAATTCCAAGAGAGCTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

512

Amino Acids

55.56

Weight (kDa)

5.58

Isoelectric Point (pI)

58.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Zn_ribbon_Dof PF02701 151 - 207 1.2e-32 Dof domain, zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1072
Acc36I ACCTGC 1 cut(s) 1072
AccB7I CCANNNNNTGG 1 cut(s) 1196
AccII CGCG 2 cut(s) 92, 119
AccIII TCCGGA 1 cut(s) 124
AclWI GGATC 2 cut(s) 122, 135
AcsI RAATTY 2 cut(s) 916, 1520
AcuI CTGAAG 5 cut(s) 318, 458, 675, 690, 764
AfaI GTAC 4 cut(s) 711, 801, 811, 1131
AfiI CCNNNNNNNGG 6 cut(s) 131, 185, 942, 1196, 1217, 1441
AgsI TTSAA 3 cut(s) 388, 915, 921
AjnI CCWGG 5 cut(s) 178, 973, 1003, 1078, 1339
AjuI GAANNNNNNNTTGG 2 cut(s) 1183, 1215
AloI GAACNNNNNNTCC 4 cut(s) 476, 508, 831, 863
Alw21I GWGCWC 3 cut(s) 1012, 1049, 1535
Alw26I GTCTC 5 cut(s) 359, 404, 655, 923, 1268
AlwI GGATC 2 cut(s) 122, 135
Ama87I CYCGRG 1 cut(s) 941
Aor13HI TCCGGA 1 cut(s) 124
AoxI GGCC 4 cut(s) 390, 944, 1016, 1428
ApeKI GCWGC 7 cut(s) 52, 320, 371, 1106, 1109, 1349, 1499
ApoI RAATTY 2 cut(s) 916, 1520
AseI ATTAAT 1 cut(s) 842
AspS9I GGNCC 3 cut(s) 16, 61, 944
AsuC2I CCSGG 5 cut(s) 20, 132, 529, 942, 943
AsuHPI GGTGA 3 cut(s) 221, 347, 1457
AsuII TTCGAA 1 cut(s) 890
AvaI CYCGRG 1 cut(s) 941
AvaII GGWCC 2 cut(s) 16, 61
BamHI GGATCC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 1049, 1535
BbsI GAAGAC 2 cut(s) 47, 150
Bbv12I GWGCWC 3 cut(s) 1012, 1049, 1535
BbvCI CCTCAGC 1 cut(s) 1161
BbvI GCAGC 7 cut(s) 39, 332, 358, 1096, 1118, 1361, 1486
BccI CCATC 2 cut(s) 708, 1174
BceAI ACGGC 1 cut(s) 52
BcgI CGANNNNNNTGC 2 cut(s) 34, 68
BciT130I CCWGG 5 cut(s) 180, 975, 1005, 1080, 1341
BciVI GTATCC 1 cut(s) 1095
BclI TGATCA 1 cut(s) 883
BcnI CCSGG 5 cut(s) 20, 132, 529, 942, 943
BcoDI GTCTC 5 cut(s) 359, 404, 655, 923, 1268
BfaI CTAG 1 cut(s) 1509
BfmI CTRYAG 1 cut(s) 1104
BfuAI ACCTGC 1 cut(s) 1072
BfuI GTATCC 1 cut(s) 1095
BglII AGATCT 1 cut(s) 896
Bme18I GGWCC 2 cut(s) 16, 61
BmeT110I CYCGRG 1 cut(s) 941
BmgT120I GGNCC 3 cut(s) 16, 61, 944
BmiI GGNNCC 6 cut(s) 17, 18, 63, 123, 129, 1031
BmsI GCATC 3 cut(s) 130, 332, 1292
BpiI GAAGAC 2 cut(s) 47, 150
BpmI CTGGAG 3 cut(s) 201, 1035, 1062
Bpu10I CCTNAGC 1 cut(s) 1161
Bpu14I TTCGAA 1 cut(s) 890
BpuMI CCSGG 5 cut(s) 20, 132, 529, 942, 943
BsaJI CCNNGG 7 cut(s) 527, 941, 1013, 1025, 1079, 1151, 1339
BsaWI WCCGGW 3 cut(s) 124, 1434, 1477
BsaXI ACNNNNNCTCC 4 cut(s) 174, 204, 264, 294
Bsc4I CCNNNNNNNGG 6 cut(s) 131, 185, 942, 1196, 1217, 1441
Bse1I ACTGG 2 cut(s) 590, 1052
BseAI TCCGGA 1 cut(s) 124
BseBI CCWGG 5 cut(s) 180, 975, 1005, 1080, 1341
BseDI CCNNGG 7 cut(s) 527, 941, 1013, 1025, 1079, 1151, 1339
BseGI GGATG 5 cut(s) 145, 700, 931, 932, 1240
BseLI CCNNNNNNNGG 6 cut(s) 131, 185, 942, 1196, 1217, 1441
BseMII CTCAG 5 cut(s) 65, 644, 756, 1175, 1254
BseNI ACTGG 2 cut(s) 590, 1052
BseRI GAGGAG 4 cut(s) 119, 198, 201, 1286
BseXI GCAGC 7 cut(s) 39, 332, 358, 1096, 1118, 1361, 1486
BsgI GTGCAG 1 cut(s) 357
Bsh1236I CGCG 2 cut(s) 92, 119
BshFI GGCC 4 cut(s) 392, 946, 1018, 1430
BsiHKAI GWGCWC 3 cut(s) 1012, 1049, 1535
BsiHKCI CYCGRG 1 cut(s) 941
BsiSI CCGG 8 cut(s) 20, 56, 125, 131, 529, 942, 1435, 1478
BslFI GGGAC 4 cut(s) 29, 47, 586, 1431
BslI CCNNNNNNNGG 6 cut(s) 131, 185, 942, 1196, 1217, 1441
BsmAI GTCTC 5 cut(s) 359, 404, 655, 923, 1268
BsmFI GGGAC 4 cut(s) 29, 47, 586, 1431
BsmI GAATGC 2 cut(s) 673, 1297
BsnI GGCC 4 cut(s) 392, 946, 1018, 1430
BsoBI CYCGRG 1 cut(s) 941
Bsp119I TTCGAA 1 cut(s) 890
Bsp1286I GDGCHC 3 cut(s) 1012, 1049, 1535
Bsp13I TCCGGA 1 cut(s) 124
Bsp1407I TGTACA 1 cut(s) 1129
Bsp143I GATC 4 cut(s) 24, 127, 883, 896
BspANI GGCC 4 cut(s) 392, 946, 1018, 1430
BspCNI CTCAG 5 cut(s) 66, 643, 755, 1174, 1255
BspEI TCCGGA 1 cut(s) 124
BspFNI CGCG 2 cut(s) 92, 119
BspHI TCATGA 1 cut(s) 1535
BspLI GGNNCC 6 cut(s) 17, 18, 63, 123, 129, 1031
BspMAI CTGCAG 1 cut(s) 1108
BspMI ACCTGC 1 cut(s) 1072
BspPI GGATC 2 cut(s) 122, 135
BspT104I TTCGAA 1 cut(s) 890
BsrGI TGTACA 1 cut(s) 1129
BsrI ACTGG 2 cut(s) 590, 1052
BssECI CCNNGG 7 cut(s) 527, 941, 1013, 1025, 1079, 1151, 1339
BssMI GATC 4 cut(s) 24, 127, 883, 896
BssT1I CCWWGG 2 cut(s) 1013, 1151
Bst2UI CCWGG 5 cut(s) 180, 975, 1005, 1080, 1341
Bst4CI ACNGT 7 cut(s) 88, 149, 209, 649, 727, 809, 904
Bst6I CTCTTC 3 cut(s) 210, 294, 1263
BstAPI GCANNNNNTGC 2 cut(s) 546, 961
BstAUI TGTACA 1 cut(s) 1129
BstBI TTCGAA 1 cut(s) 890
BstC8I GCNNGC 1 cut(s) 786
BstDEI CTNAG 5 cut(s) 74, 630, 742, 1161, 1263
BstDSI CCRYGG 1 cut(s) 1025
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 5 cut(s) 145, 700, 931, 932, 1240
BstFNI CGCG 2 cut(s) 92, 119
BstKTI GATC 4 cut(s) 27, 130, 886, 899
BstMAI GTCTC 5 cut(s) 359, 404, 655, 923, 1268
BstMBI GATC 4 cut(s) 24, 127, 883, 896
BstMWI GCNNNNNNNGC 7 cut(s) 98, 477, 546, 952, 961, 1162, 1496
BstNI CCWGG 5 cut(s) 180, 975, 1005, 1080, 1341
BstNSI RCATGY 1 cut(s) 1150
BstSFI CTRYAG 1 cut(s) 1104
BstUI CGCG 2 cut(s) 92, 119
BstV1I GCAGC 7 cut(s) 39, 332, 358, 1096, 1118, 1361, 1486
BstV2I GAAGAC 2 cut(s) 47, 150
BstX2I RGATCY 2 cut(s) 127, 896
BstYI RGATCY 2 cut(s) 127, 896
BsuI GTATCC 1 cut(s) 1095
BsuRI GGCC 4 cut(s) 392, 946, 1018, 1430
BtgI CCRYGG 1 cut(s) 1025
BtsCI GGATG 5 cut(s) 145, 700, 931, 932, 1240
BtsI GCAGTG 1 cut(s) 1417
BtsIMutI CAGTG 3 cut(s) 597, 723, 1417
BveI ACCTGC 1 cut(s) 1072
Cac8I GCNNGC 1 cut(s) 786
CciI TCATGA 1 cut(s) 1535
Cfr13I GGNCC 3 cut(s) 16, 61, 944
Cfr9I CCCGGG 1 cut(s) 941
CseI GACGC 1 cut(s) 326
Csp6I GTAC 4 cut(s) 710, 800, 810, 1130
CviAII CATG 5 cut(s) 462, 481, 996, 1147, 1536
CviQI GTAC 4 cut(s) 710, 800, 810, 1130
DdeI CTNAG 5 cut(s) 74, 630, 742, 1161, 1263
DpnI GATC 4 cut(s) 26, 129, 885, 898
DpnII GATC 4 cut(s) 24, 127, 883, 896
Eam1104I CTCTTC 3 cut(s) 210, 294, 1263
EarI CTCTTC 3 cut(s) 210, 294, 1263
EciI GGCGGA 2 cut(s) 116, 882
Ecl136II GAGCTC 2 cut(s) 1047, 1533
Eco130I CCWWGG 2 cut(s) 1013, 1151
Eco147I AGGCCT 1 cut(s) 1430
Eco24I GRGCYC 2 cut(s) 1049, 1535
Eco47I GGWCC 2 cut(s) 16, 61
Eco53kI GAGCTC 2 cut(s) 1047, 1533
Eco57I CTGAAG 5 cut(s) 318, 458, 675, 690, 764
Eco88I CYCGRG 1 cut(s) 941
EcoICRI GAGCTC 2 cut(s) 1047, 1533
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoO109I RGGNCCY 2 cut(s) 16, 61
EcoRII CCWGG 5 cut(s) 178, 973, 1003, 1078, 1339
EcoT14I CCWWGG 2 cut(s) 1013, 1151
EcoT38I GRGCYC 2 cut(s) 1049, 1535
ErhI CCWWGG 2 cut(s) 1013, 1151
FaeI CATG 5 cut(s) 465, 484, 999, 1150, 1539
FaqI GGGAC 4 cut(s) 29, 47, 586, 1431
FatI CATG 5 cut(s) 461, 480, 995, 1146, 1535
FauI CCCGC 3 cut(s) 72, 476, 990
FbaI TGATCA 1 cut(s) 883
FokI GGATG 5 cut(s) 152, 687, 919, 938, 1247
FriOI GRGCYC 2 cut(s) 1049, 1535
FspBI CTAG 1 cut(s) 1509
GsuI CTGGAG 3 cut(s) 201, 1035, 1062
HaeIII GGCC 4 cut(s) 392, 946, 1018, 1430
HapII CCGG 8 cut(s) 20, 56, 125, 131, 529, 942, 1435, 1478
HgaI GACGC 1 cut(s) 326
Hin1II CATG 5 cut(s) 465, 484, 999, 1150, 1539
HincII GTYRAC 2 cut(s) 358, 520
HindII GTYRAC 2 cut(s) 358, 520
HindIII AAGCTT 1 cut(s) 29
HpaII CCGG 8 cut(s) 20, 56, 125, 131, 529, 942, 1435, 1478
HphI GGTGA 3 cut(s) 221, 347, 1457
Hpy166II GTNNAC 4 cut(s) 358, 520, 697, 1061
Hpy188III TCNNGA 7 cut(s) 37, 125, 314, 327, 664, 730, 1536
Hpy8I GTNNAC 4 cut(s) 358, 520, 697, 1061
Hpy99I CGWCG 3 cut(s) 92, 119, 609
HpyAV CCTTC 5 cut(s) 303, 636, 714, 830, 1441
HpyCH4III ACNGT 7 cut(s) 88, 149, 209, 649, 727, 809, 904
HpyCH4IV ACGT 1 cut(s) 798
HpyCH4V TGCA 5 cut(s) 374, 540, 964, 1106, 1502
HpyF10VI GCNNNNNNNGC 7 cut(s) 98, 477, 546, 952, 961, 1162, 1496
HpyF3I CTNAG 5 cut(s) 74, 630, 742, 1161, 1263
HpySE526I ACGT 1 cut(s) 798
Hsp92II CATG 5 cut(s) 465, 484, 999, 1150, 1539
KflI GGGWCCC 1 cut(s) 16
Kpn2I TCCGGA 1 cut(s) 124
Ksp22I TGATCA 1 cut(s) 883
Kzo9I GATC 4 cut(s) 24, 127, 883, 896
LmnI GCTCC 4 cut(s) 127, 1015, 1044, 1192
Lsp1109I GCAGC 7 cut(s) 39, 332, 358, 1096, 1118, 1361, 1486
LweI GCATC 3 cut(s) 130, 332, 1292
MaeI CTAG 1 cut(s) 1509
MaeII ACGT 1 cut(s) 798
MaeIII GTNAC 3 cut(s) 497, 904, 1512
MalI GATC 4 cut(s) 26, 129, 885, 898
MboI GATC 4 cut(s) 24, 127, 883, 896
MflI RGATCY 2 cut(s) 127, 896
MhlI GDGCHC 3 cut(s) 1012, 1049, 1535
MluCI AATT 7 cut(s) 255, 418, 453, 843, 916, 967, 1520
MlyI GAGTC 4 cut(s) 198, 702, 770, 1413
MmeI TCCRAC 2 cut(s) 189, 1235
MroI TCCGGA 1 cut(s) 124
MseI TTAA 4 cut(s) 842, 1383, 1425, 1518
MspA1I CMGCKG 5 cut(s) 52, 471, 566, 1109, 1499
MspI CCGG 8 cut(s) 20, 56, 125, 131, 529, 942, 1435, 1478
Mva1269I GAATGC 2 cut(s) 673, 1297
MvaI CCWGG 5 cut(s) 180, 975, 1005, 1080, 1341
MvnI CGCG 2 cut(s) 92, 119
MwoI GCNNNNNNNGC 7 cut(s) 98, 477, 546, 952, 961, 1162, 1496
NciI CCSGG 5 cut(s) 20, 132, 529, 942, 943
NdeII GATC 4 cut(s) 24, 127, 883, 896
NlaIII CATG 5 cut(s) 465, 484, 999, 1150, 1539
NlaIV GGNNCC 6 cut(s) 17, 18, 63, 123, 129, 1031
NmeAIII GCCGAG 1 cut(s) 1321
NmuCI GTSAC 2 cut(s) 904, 1512
NspI RCATGY 1 cut(s) 1150
NspV TTCGAA 1 cut(s) 890
PagI TCATGA 1 cut(s) 1535
PaqCI CACCTGC 1 cut(s) 1072
PceI AGGCCT 1 cut(s) 1430
PcsI WCGNNNNNNNCGW 1 cut(s) 167
PctI GAATGC 2 cut(s) 673, 1297
PfeI GAWTC 7 cut(s) 46, 80, 310, 911, 1312, 1400, 1456
PflMI CCANNNNNTGG 1 cut(s) 1196
PleI GAGTC 4 cut(s) 197, 701, 769, 1413
PpsI GAGTC 4 cut(s) 197, 701, 769, 1413
PpuMI RGGWCCY 2 cut(s) 16, 61
PshBI ATTAAT 1 cut(s) 842
Psp124BI GAGCTC 2 cut(s) 1049, 1535
Psp5II RGGWCCY 2 cut(s) 16, 61
Psp6I CCWGG 5 cut(s) 178, 973, 1003, 1078, 1339
PspGI CCWGG 5 cut(s) 178, 973, 1003, 1078, 1339
PspN4I GGNNCC 6 cut(s) 17, 18, 63, 123, 129, 1031
PspPI GGNCC 3 cut(s) 16, 61, 944
PspPPI RGGWCCY 2 cut(s) 16, 61
PstI CTGCAG 1 cut(s) 1108
PsuI RGATCY 2 cut(s) 127, 896
PvuII CAGCTG 3 cut(s) 566, 1109, 1499
RsaI GTAC 4 cut(s) 711, 801, 811, 1131
RsaNI GTAC 4 cut(s) 710, 800, 810, 1130
SacI GAGCTC 2 cut(s) 1049, 1535
SaqAI TTAA 4 cut(s) 842, 1383, 1425, 1518
Sau3AI GATC 4 cut(s) 24, 127, 883, 896
Sau96I GGNCC 3 cut(s) 16, 61, 944
SchI GAGTC 4 cut(s) 198, 702, 770, 1413
SduI GDGCHC 3 cut(s) 1012, 1049, 1535
SfaNI GCATC 3 cut(s) 130, 332, 1292
SfcI CTRYAG 1 cut(s) 1104
SfuI TTCGAA 1 cut(s) 890
SinI GGWCC 2 cut(s) 16, 61
SmaI CCCGGG 1 cut(s) 943
Sse9I AATT 7 cut(s) 255, 418, 453, 843, 916, 967, 1520
SseBI AGGCCT 1 cut(s) 1430
SspMI CTAG 1 cut(s) 1509
SstI GAGCTC 2 cut(s) 1049, 1535
StuI AGGCCT 1 cut(s) 1430
StyI CCWWGG 2 cut(s) 1013, 1151
TaaI ACNGT 7 cut(s) 88, 149, 209, 649, 727, 809, 904
TaiI ACGT 1 cut(s) 801
TaqI TCGA 4 cut(s) 673, 890, 1229, 1403
TasI AATT 7 cut(s) 255, 418, 453, 843, 916, 967, 1520
TatI WGTACW 2 cut(s) 709, 1129
TauI GCSGC 4 cut(s) 95, 98, 101, 122
TfiI GAWTC 7 cut(s) 46, 80, 310, 911, 1312, 1400, 1456
Tru1I TTAA 4 cut(s) 842, 1383, 1425, 1518
Tru9I TTAA 4 cut(s) 842, 1383, 1425, 1518
TscAI CASTG 3 cut(s) 597, 730, 1417
TseFI GTSAC 2 cut(s) 904, 1512
TseI GCWGC 7 cut(s) 52, 320, 371, 1106, 1109, 1349, 1499
Tsp45I GTSAC 2 cut(s) 904, 1512
TspDTI ATGAA 3 cut(s) 291, 323, 1464
TspMI CCCGGG 1 cut(s) 941
TspRI CASTG 3 cut(s) 597, 730, 1417
Van91I CCANNNNNTGG 1 cut(s) 1196
VpaK11BI GGWCC 2 cut(s) 16, 61
VspI ATTAAT 1 cut(s) 842
XagI CCTNNNNNAGG 1 cut(s) 183
XapI RAATTY 2 cut(s) 916, 1520
XceI RCATGY 1 cut(s) 1150
XmaI CCCGGG 1 cut(s) 941
XspI CTAG 1 cut(s) 1509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.