Rmu_sc0000998.1_g000007

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000998.1
OG0003993
Physical Location & Seq
Reverse (-)
20845 .. 22035
1191 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000998.1_g000007.1.cds

Sequence Viewer

Length: 1002 bp
atggaggtatggagaggcttgttcgtgatttcgggtttggttttgatgatgattgatatgcaggggaggggatcagaagcacgtttagcagaaaacttctacagctctagttgtccaaatgttgaattcgtagtgaagcaagccgtctctacgaaactcagccaaaaccctccaacaattccgggtactctgcgactgtttttccatgactgctttattgagggatgcgatgcctcgataatgattgcttcatcaaatggggatgcagagaaggattattcagataatctttctttggccggagatggatttgacaccgtagtcaaggctaagcaagcagtcgaagcacaatgccctggcatcgtctcttgtgccgacattttggcactggctgcccgagatgttgtagtcctagccggaggccctacgtttaatgtagaattggggcgtcgagatggactgatctcgaaagcctctcgggtccctggcaatttgcctgaatcattttttaacctgaagcaactcaacaccatgtttgccaaacacaacctttcccaaactgatgttattgcactgtcgggagcgcatacactaggcttttcgcactgcagccgctttgcaagccgtttgtactcattttcaaactcatctgccgttgacccttctttggatccaggctacgccaagcagctgatgtcaacttgcccgcgagatgtgggcaccagcatacctgtcaacctggacccaactccacaaacatttgacaatgcttattaccagaacttggttgcaaggaagggcttgttgacttcagatgaggttctgttctctgactctgcttctaagcctactgtcatagattttgccaacaaccctggtaacttcaatggagccttcatcgccgcaatgaggaagcttggcagggtcggtgtgaagactggtaatgaaggcgagataaggaaagactgcgctgcgttcaatcatgatcatggtgatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

35.75

Weight (kDa)

5.54

Isoelectric Point (pI)

28.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 719
AccB7I CCANNNNNTGG 1 cut(s) 784
AccII CGCG 1 cut(s) 709
AciI CCGC 3 cut(s) 613, 707, 903
AclWI GGATC 3 cut(s) 79, 665, 678
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 536, 795
AcyI GRCGYC 1 cut(s) 448
AfaI GTAC 2 cut(s) 187, 632
AfiI CCNNNNNNNGG 3 cut(s) 667, 784, 909
AgsI TTSAA 4 cut(s) 125, 642, 886, 979
AjnI CCWGG 5 cut(s) 355, 484, 673, 738, 874
AluBI AGCT 4 cut(s) 105, 691, 916, 999
AluI AGCT 4 cut(s) 105, 691, 916, 999
Alw26I GTCTC 2 cut(s) 151, 370
AlwI GGATC 3 cut(s) 79, 665, 678
Ama87I CYCGRG 2 cut(s) 396, 477
AoxI GGCC 2 cut(s) 297, 421
ApeKI GCWGC 4 cut(s) 392, 609, 688, 971
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 586, 971
AspS9I GGNCC 3 cut(s) 422, 481, 742
AsuC2I CCSGG 1 cut(s) 183
AvaI CYCGRG 2 cut(s) 396, 477
AvaII GGWCC 2 cut(s) 481, 742
BaeGI GKGCMC 1 cut(s) 722
BamHI GGATCC 1 cut(s) 670
BanI GGYRCC 1 cut(s) 719
BbsI GAAGAC 1 cut(s) 941
BbvI GCAGC 4 cut(s) 379, 621, 700, 958
BccI CCATC 2 cut(s) 299, 449
BceAI ACGGC 3 cut(s) 128, 609, 638
BciT130I CCWGG 5 cut(s) 357, 486, 675, 740, 876
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 151, 370
BfaI CTAG 4 cut(s) 108, 413, 593, 1000
BfmI CTRYAG 2 cut(s) 100, 607
BisI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 6 cut(s) 394, 611, 614, 690, 904, 973
Bme1390I CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
Bme18I GGWCC 2 cut(s) 481, 742
BmeT110I CYCGRG 2 cut(s) 396, 477
BmgT120I GGNCC 3 cut(s) 422, 481, 742
BmiI GGNNCC 6 cut(s) 482, 483, 672, 721, 744, 892
BmrFI CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
BmsI GCATC 4 cut(s) 215, 220, 253, 369
BpiI GAAGAC 1 cut(s) 941
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 448
BsaJI CCNNGG 3 cut(s) 355, 484, 874
Bsc4I CCNNNNNNNGG 3 cut(s) 667, 784, 909
Bse1I ACTGG 2 cut(s) 393, 943
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 5 cut(s) 357, 486, 675, 740, 876
BseDI CCNNGG 3 cut(s) 355, 484, 874
BseGI GGATG 2 cut(s) 230, 268
BseLI CCNNNNNNNGG 3 cut(s) 667, 784, 909
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 393, 943
BseSI GKGCMC 1 cut(s) 722
BseXI GCAGC 4 cut(s) 379, 621, 700, 958
Bsh1236I CGCG 1 cut(s) 709
BshFI GGCC 2 cut(s) 299, 423
BshNI GGYRCC 1 cut(s) 719
BsiHKCI CYCGRG 2 cut(s) 396, 477
BsiSI CCGG 3 cut(s) 182, 300, 417
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 3 cut(s) 667, 784, 909
BsmAI GTCTC 2 cut(s) 151, 370
BsmBI CGTCTC 2 cut(s) 151, 370
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 2 cut(s) 299, 423
BsoBI CYCGRG 2 cut(s) 396, 477
Bsp1286I GDGCHC 1 cut(s) 722
Bsp143I GATC 4 cut(s) 71, 462, 670, 985
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 613, 707, 903
BspANI GGCC 2 cut(s) 299, 423
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 709
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 6 cut(s) 482, 483, 672, 721, 744, 892
BspMAI CTGCAG 1 cut(s) 611
BspPI GGATC 3 cut(s) 79, 665, 678
BspT107I GGYRCC 1 cut(s) 719
BsrDI GCAATG 1 cut(s) 912
BsrI ACTGG 2 cut(s) 393, 943
BssECI CCNNGG 3 cut(s) 355, 484, 874
BssMI GATC 4 cut(s) 71, 462, 670, 985
BssNI GRCGYC 1 cut(s) 448
Bst2UI CCWGG 5 cut(s) 357, 486, 675, 740, 876
Bst4CI ACNGT 4 cut(s) 198, 319, 576, 853
BstACI GRCGYC 1 cut(s) 448
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 141, 336, 622, 707
BstDEI CTNAG 3 cut(s) 158, 330, 843
BstF5I GGATG 2 cut(s) 230, 268
BstFNI CGCG 1 cut(s) 709
BstHHI GCGC 2 cut(s) 586, 971
BstKTI GATC 4 cut(s) 74, 465, 673, 988
BstMAI GTCTC 2 cut(s) 151, 370
BstMBI GATC 4 cut(s) 71, 462, 670, 985
BstMWI GCNNNNNNNGC 6 cut(s) 86, 335, 344, 392, 621, 899
BstNI CCWGG 5 cut(s) 357, 486, 675, 740, 876
BstSCI CCNGG 6 cut(s) 181, 355, 484, 673, 738, 874
BstSFI CTRYAG 2 cut(s) 100, 607
BstSLI GKGCMC 1 cut(s) 722
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 4 cut(s) 379, 621, 700, 958
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 2 cut(s) 299, 423
BtgZI GCGATG 2 cut(s) 243, 883
BtsCI GGATG 2 cut(s) 230, 268
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 3 cut(s) 386, 572, 604
Cac8I GCNNGC 4 cut(s) 141, 336, 622, 707
CciI TCATGA 1 cut(s) 982
CfoI GCGC 2 cut(s) 586, 971
Cfr13I GGNCC 3 cut(s) 422, 481, 742
CseI GACGC 1 cut(s) 437
Csp6I GTAC 2 cut(s) 186, 631
CviAII CATG 4 cut(s) 206, 532, 983, 989
CviQI GTAC 2 cut(s) 186, 631
DdeI CTNAG 3 cut(s) 158, 330, 843
DpnI GATC 4 cut(s) 73, 464, 672, 987
DpnII GATC 4 cut(s) 71, 462, 670, 985
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 481, 742
Eco57I CTGAAG 2 cut(s) 536, 795
Eco88I CYCGRG 2 cut(s) 396, 477
EcoO109I RGGNCCY 2 cut(s) 422, 481
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 5 cut(s) 355, 484, 673, 738, 874
Esp3I CGTCTC 2 cut(s) 151, 370
FaeI CATG 4 cut(s) 209, 535, 986, 992
FaiI YATR 9 cut(s) 10, 59, 207, 533, 588, 728, 857, 984, 990
FaqI GGGAC 1 cut(s) 467
FatI CATG 4 cut(s) 205, 531, 982, 988
FauI CCCGC 1 cut(s) 714
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
FokI GGATG 2 cut(s) 237, 275
Fsp4HI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
FspBI CTAG 4 cut(s) 108, 413, 593, 1000
GlaI GCGC 2 cut(s) 585, 970
GluI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
HaeIII GGCC 2 cut(s) 299, 423
HapII CCGG 3 cut(s) 182, 300, 417
HgaI GACGC 1 cut(s) 437
HhaI GCGC 2 cut(s) 586, 971
Hin1I GRCGYC 1 cut(s) 448
Hin1II CATG 4 cut(s) 209, 535, 986, 992
Hin6I GCGC 2 cut(s) 584, 969
HinP1I GCGC 2 cut(s) 584, 969
HincII GTYRAC 4 cut(s) 658, 699, 736, 807
HindII GTYRAC 4 cut(s) 658, 699, 736, 807
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 2 cut(s) 500, 833
HpaII CCGG 3 cut(s) 182, 300, 417
Hpy166II GTNNAC 4 cut(s) 658, 699, 736, 807
Hpy188I TCNGA 4 cut(s) 76, 283, 814, 832
Hpy188III TCNNGA 5 cut(s) 25, 452, 466, 579, 983
Hpy8I GTNNAC 4 cut(s) 658, 699, 736, 807
Hpy99I CGWCG 1 cut(s) 453
HpyAV CCTTC 5 cut(s) 265, 672, 790, 904, 941
HpyCH4III ACNGT 4 cut(s) 198, 319, 576, 853
HpyCH4IV ACGT 2 cut(s) 82, 428
HpyCH4V TGCA 6 cut(s) 61, 266, 572, 609, 620, 791
HpyF10VI GCNNNNNNNGC 6 cut(s) 86, 335, 344, 392, 621, 899
HpyF3I CTNAG 3 cut(s) 158, 330, 843
HpySE526I ACGT 2 cut(s) 82, 428
Hsp92I GRCGYC 1 cut(s) 448
Hsp92II CATG 4 cut(s) 209, 535, 986, 992
HspAI GCGC 2 cut(s) 584, 969
KflI GGGWCCC 1 cut(s) 481
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 4 cut(s) 71, 462, 670, 985
LmnI GCTCC 2 cut(s) 581, 890
Lsp1109I GCAGC 4 cut(s) 379, 621, 700, 958
LweI GCATC 4 cut(s) 215, 220, 253, 369
MaeI CTAG 4 cut(s) 108, 413, 593, 1000
MaeII ACGT 2 cut(s) 82, 428
MaeIII GTNAC 1 cut(s) 878
MalI GATC 4 cut(s) 73, 464, 672, 987
MboI GATC 4 cut(s) 71, 462, 670, 985
MboII GAAGA 1 cut(s) 946
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 722
MluCI AATT 4 cut(s) 125, 177, 440, 490
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 9 cut(s) 8, 60, 180, 214, 244, 413, 484, 811, 903
MseI TTAA 2 cut(s) 432, 510
MslI CAYNNNNRTG 1 cut(s) 987
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 3 cut(s) 182, 300, 417
MspR9I CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
MvaI CCWGG 5 cut(s) 357, 486, 675, 740, 876
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 6 cut(s) 86, 335, 344, 392, 621, 899
NciI CCSGG 1 cut(s) 183
NdeII GATC 4 cut(s) 71, 462, 670, 985
NlaIII CATG 4 cut(s) 209, 535, 986, 992
NlaIV GGNNCC 6 cut(s) 482, 483, 672, 721, 744, 892
PagI TCATGA 1 cut(s) 982
PfeI GAWTC 1 cut(s) 500
PflMI CCANNNNNTGG 1 cut(s) 784
PkrI GCNGC 6 cut(s) 394, 611, 614, 690, 904, 973
PleI GAGTC 1 cut(s) 827
PpsI GAGTC 1 cut(s) 827
PpuMI RGGWCCY 1 cut(s) 481
Psp5II RGGWCCY 1 cut(s) 481
Psp6I CCWGG 5 cut(s) 355, 484, 673, 738, 874
PspGI CCWGG 5 cut(s) 355, 484, 673, 738, 874
PspN4I GGNNCC 6 cut(s) 482, 483, 672, 721, 744, 892
PspPI GGNCC 3 cut(s) 422, 481, 742
PspPPI RGGWCCY 1 cut(s) 481
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 2 cut(s) 187, 632
RsaNI GTAC 2 cut(s) 186, 631
RseI CAYNNNNRTG 1 cut(s) 987
SaqAI TTAA 2 cut(s) 432, 510
SatI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
Sau3AI GATC 4 cut(s) 71, 462, 670, 985
Sau96I GGNCC 3 cut(s) 422, 481, 742
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
SduI GDGCHC 1 cut(s) 722
SfaNI GCATC 4 cut(s) 215, 220, 253, 369
SfcI CTRYAG 2 cut(s) 100, 607
SinI GGWCC 2 cut(s) 481, 742
SmiMI CAYNNNNRTG 1 cut(s) 987
Sse9I AATT 4 cut(s) 125, 177, 440, 490
SsiI CCGC 3 cut(s) 613, 707, 903
SspMI CTAG 4 cut(s) 108, 413, 593, 1000
StyD4I CCNGG 6 cut(s) 181, 355, 484, 673, 738, 874
TaaI ACNGT 4 cut(s) 198, 319, 576, 853
TaiI ACGT 2 cut(s) 85, 431
TaqI TCGA 4 cut(s) 236, 342, 451, 467
TasI AATT 4 cut(s) 125, 177, 440, 490
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 615, 905
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 2 cut(s) 432, 510
Tru9I TTAA 2 cut(s) 432, 510
TscAI CASTG 3 cut(s) 393, 579, 611
TseI GCWGC 4 cut(s) 392, 609, 688, 971
TspDTI ATGAA 3 cut(s) 240, 886, 960
TspRI CASTG 3 cut(s) 393, 579, 611
Van91I CCANNNNNTGG 1 cut(s) 784
VpaK11BI GGWCC 2 cut(s) 481, 742
XapI RAATTY 1 cut(s) 125
XspI CTAG 4 cut(s) 108, 413, 593, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.