Rroxscaffold_2G00077040

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0003993
Physical Location & Seq
Reverse (-)
729633 .. 731065
1433 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00077040.1

Sequence Viewer

Length: 1029 bp
ATGGAGGTATGGAGAGGCTTGTTATTGGTGATTTCGGGTTTGGTTTTGATCATGATTGATATGCAGGGGAGGGGATCAGAAGCACGTTTAGTAGAAAACTTCTATAGCTCTAGTTGTCCAAATGTTGAATCCATAGTGAAGCAGGCAGTCTCTACCAAACTCAGCCAAAACCCTCCAACAATTCCGGGTACTCTGCGACTGTTTTTCCATGACTGCTTTATTGAGGGATGCGATGCCTCGATAATGATTGCTTCATCAAATGGGGATGCAGGGAAGGATTATTCAGATAATCGTTCTTTGGCCGGAGATGGATTTGACACCGTAGTCAAGGCTAAGCAAGCAGTCGAAGCACAATGCCCTGGCGTCGTCTCTTGTGCCGACATTTTGGCAGTTGCTGCCCGAGATGTTGTAGTCCTAGTAAGTCTAATTATCAGTGTCTCTAGTGTGAAAGCTTACGAAAAATGTACTAATCATAATTTTGTGCAGGCCGGAGGCCCTGCGTATAATGTAGAATTGGGGCGTCGAGATGGACTGATCTCAAAAGCCTCTCGGGTCCCTGGCAATTTGCCTGAACCATTTTTTAATCTGAAGCAACTCAACACCATGTTTGCCAAACACAACCTTTCCCAAACTGATGTTATTGCACTGTCTGGAGCGCATACACTAGGGTTTTCGCACTGCAGCCGCTTTGCAAGCCGTTTGCAACGCGCCAAGCAGCTGATGTCAACTTGCCCGCAAGATGTGGACACCGGCATACCTGTCAACCTGGACCCAACTCCACAAACATTTGATAATGCTTATTACCAGAACTTGGTTGCAAGGAAGGGCTTGTTGACTTCAGATGAGGTTCTGTTCTCTGACTCTGCTTCTAAGCCTACTGTCATAGATTTTGCCAACAACCCTGGTAACTTCAATGGAGCCTTCATCGCTGCAATGAGGAAGCTTGGCAGGGTCGGTGTGAAGACTGGTAATGAAGGCGAGATAAGGAAAGACTGCGCTGCGTTCAATCACGATCATGGTGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

342

Amino Acids

36.78

Weight (kDa)

6.38

Isoelectric Point (pI)

31.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 300 4.8e-70 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 323
AccB7I CCANNNNNTGG 1 cut(s) 811
AccII CGCG 1 cut(s) 708
AciI CCGC 2 cut(s) 685, 734
AclWI GGATC 1 cut(s) 82
AcoI YGGCCR 1 cut(s) 300
AcuI CTGAAG 2 cut(s) 608, 822
AcyI GRCGYC 2 cut(s) 363, 520
AfaI GTAC 2 cut(s) 190, 466
AfiI CCNNNNNNNGG 1 cut(s) 811
AgsI TTSAA 3 cut(s) 128, 913, 1006
AjnI CCWGG 4 cut(s) 358, 556, 765, 901
AluBI AGCT 5 cut(s) 108, 452, 718, 943, 1026
AluI AGCT 5 cut(s) 108, 452, 718, 943, 1026
Alw26I GTCTC 3 cut(s) 154, 373, 442
AlwI GGATC 1 cut(s) 82
AlwNI CAGNNNCTG 1 cut(s) 395
Ama87I CYCGRG 2 cut(s) 399, 549
AoxI GGCC 3 cut(s) 300, 486, 493
ApeKI GCWGC 5 cut(s) 395, 681, 715, 929, 998
AspLEI GCGC 3 cut(s) 658, 710, 998
AspS9I GGNCC 3 cut(s) 494, 553, 769
AsuC2I CCSGG 1 cut(s) 186
AsuHPI GGTGA 1 cut(s) 40
AvaI CYCGRG 2 cut(s) 399, 549
AvaII GGWCC 2 cut(s) 553, 769
BbsI GAAGAC 1 cut(s) 968
BbvI GCAGC 5 cut(s) 382, 693, 727, 916, 985
BccI CCATC 2 cut(s) 302, 521
BceAI ACGGC 1 cut(s) 681
BciT130I CCWGG 4 cut(s) 360, 558, 767, 903
BclI TGATCA 1 cut(s) 48
BcnI CCSGG 1 cut(s) 186
BcoDI GTCTC 3 cut(s) 154, 373, 442
BfaI CTAG 5 cut(s) 111, 416, 441, 665, 1027
BfmI CTRYAG 2 cut(s) 103, 679
BisI GCNGC 6 cut(s) 396, 682, 685, 716, 930, 999
BlpI GCTNAGC 1 cut(s) 333
BlsI GCNGC 6 cut(s) 397, 683, 686, 717, 931, 1000
Bme1390I CCNGG 5 cut(s) 186, 360, 558, 767, 903
Bme18I GGWCC 2 cut(s) 553, 769
BmeT110I CYCGRG 2 cut(s) 399, 549
BmgT120I GGNCC 3 cut(s) 494, 553, 769
BmiI GGNNCC 4 cut(s) 554, 555, 771, 919
BmrFI CCNGG 5 cut(s) 186, 360, 558, 767, 903
BmsI GCATC 3 cut(s) 218, 223, 256
BpiI GAAGAC 1 cut(s) 968
BpmI CTGGAG 1 cut(s) 672
Bpu1102I GCTNAGC 1 cut(s) 333
BpuMI CCSGG 1 cut(s) 186
BsaHI GRCGYC 2 cut(s) 363, 520
BsaJI CCNNGG 3 cut(s) 358, 556, 901
Bsc4I CCNNNNNNNGG 1 cut(s) 811
Bse118I RCCGGY 1 cut(s) 749
Bse1I ACTGG 1 cut(s) 970
Bse3DI GCAATG 1 cut(s) 939
BseBI CCWGG 4 cut(s) 360, 558, 767, 903
BseDI CCNNGG 3 cut(s) 358, 556, 901
BseGI GGATG 2 cut(s) 233, 271
BseLI CCNNNNNNNGG 1 cut(s) 811
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 1 cut(s) 175
BseNI ACTGG 1 cut(s) 970
BseXI GCAGC 5 cut(s) 382, 693, 727, 916, 985
BsgI GTGCAG 1 cut(s) 503
Bsh1236I CGCG 1 cut(s) 708
BshFI GGCC 3 cut(s) 302, 488, 495
BsiHKCI CYCGRG 2 cut(s) 399, 549
BsiSI CCGG 4 cut(s) 185, 303, 489, 750
BslFI GGGAC 1 cut(s) 539
BslI CCNNNNNNNGG 1 cut(s) 811
BsmAI GTCTC 3 cut(s) 154, 373, 442
BsmBI CGTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 539
BsnI GGCC 3 cut(s) 302, 488, 495
BsoBI CYCGRG 2 cut(s) 399, 549
Bsp143I GATC 4 cut(s) 48, 74, 534, 1012
Bsp1720I GCTNAGC 1 cut(s) 333
BspACI CCGC 2 cut(s) 685, 734
BspANI GGCC 3 cut(s) 302, 488, 495
BspCNI CTCAG 1 cut(s) 174
BspFNI CGCG 1 cut(s) 708
BspHI TCATGA 1 cut(s) 51
BspLI GGNNCC 4 cut(s) 554, 555, 771, 919
BspMAI CTGCAG 1 cut(s) 683
BspPI GGATC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 939
BsrFI RCCGGY 1 cut(s) 749
BsrI ACTGG 1 cut(s) 970
BssAI RCCGGY 1 cut(s) 749
BssECI CCNNGG 3 cut(s) 358, 556, 901
BssMI GATC 4 cut(s) 48, 74, 534, 1012
BssNI GRCGYC 2 cut(s) 363, 520
Bst2UI CCWGG 4 cut(s) 360, 558, 767, 903
Bst4CI ACNGT 4 cut(s) 201, 322, 648, 880
BstACI GRCGYC 2 cut(s) 363, 520
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 5 cut(s) 144, 339, 486, 694, 734
BstDEI CTNAG 3 cut(s) 161, 333, 870
BstF5I GGATG 2 cut(s) 233, 271
BstFNI CGCG 1 cut(s) 708
BstHHI GCGC 3 cut(s) 658, 710, 998
BstKTI GATC 4 cut(s) 51, 77, 537, 1015
BstMAI GTCTC 3 cut(s) 154, 373, 442
BstMBI GATC 4 cut(s) 48, 74, 534, 1012
BstMWI GCNNNNNNNGC 5 cut(s) 338, 347, 395, 693, 926
BstNI CCWGG 4 cut(s) 360, 558, 767, 903
BstSCI CCNGG 5 cut(s) 184, 358, 556, 765, 901
BstSFI CTRYAG 2 cut(s) 103, 679
BstUI CGCG 1 cut(s) 708
BstV1I GCAGC 5 cut(s) 382, 693, 727, 916, 985
BstV2I GAAGAC 1 cut(s) 968
BsuRI GGCC 3 cut(s) 302, 488, 495
BtgZI GCGATG 2 cut(s) 246, 910
BtsCI GGATG 2 cut(s) 233, 271
BtsI GCAGTG 1 cut(s) 676
BtsIMutI CAGTG 3 cut(s) 439, 644, 676
Cac8I GCNNGC 5 cut(s) 144, 339, 486, 694, 734
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 1 cut(s) 51
CfoI GCGC 3 cut(s) 658, 710, 998
Cfr10I RCCGGY 1 cut(s) 749
Cfr13I GGNCC 3 cut(s) 494, 553, 769
CseI GACGC 2 cut(s) 352, 509
Csp6I GTAC 2 cut(s) 189, 465
CviAII CATG 4 cut(s) 52, 209, 604, 1016
CviQI GTAC 2 cut(s) 189, 465
DdeI CTNAG 3 cut(s) 161, 333, 870
DpnI GATC 4 cut(s) 50, 76, 536, 1014
DpnII GATC 4 cut(s) 48, 74, 534, 1012
DrdI GACNNNNNNGTC 1 cut(s) 323
DseDI GACNNNNNNGTC 1 cut(s) 323
EaeI YGGCCR 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 553, 769
Eco57I CTGAAG 2 cut(s) 608, 822
Eco88I CYCGRG 2 cut(s) 399, 549
EcoO109I RGGNCCY 2 cut(s) 494, 553
EcoRII CCWGG 4 cut(s) 358, 556, 765, 901
Esp3I CGTCTC 1 cut(s) 373
FaeI CATG 4 cut(s) 55, 212, 607, 1019
FaqI GGGAC 1 cut(s) 539
FatI CATG 4 cut(s) 51, 208, 603, 1015
FauI CCCGC 1 cut(s) 741
FbaI TGATCA 1 cut(s) 48
Fnu4HI GCNGC 6 cut(s) 396, 682, 685, 716, 930, 999
FokI GGATG 2 cut(s) 240, 278
Fsp4HI GCNGC 6 cut(s) 396, 682, 685, 716, 930, 999
FspBI CTAG 5 cut(s) 111, 416, 441, 665, 1027
GlaI GCGC 3 cut(s) 657, 709, 997
GluI GCNGC 6 cut(s) 396, 682, 685, 716, 930, 999
GsuI CTGGAG 1 cut(s) 672
HaeIII GGCC 3 cut(s) 302, 488, 495
HapII CCGG 4 cut(s) 185, 303, 489, 750
HgaI GACGC 2 cut(s) 352, 509
HhaI GCGC 3 cut(s) 658, 710, 998
Hin1I GRCGYC 2 cut(s) 363, 520
Hin1II CATG 4 cut(s) 55, 212, 607, 1019
Hin6I GCGC 3 cut(s) 656, 708, 996
HinP1I GCGC 3 cut(s) 656, 708, 996
HincII GTYRAC 3 cut(s) 726, 763, 834
HindII GTYRAC 3 cut(s) 726, 763, 834
HindIII AAGCTT 2 cut(s) 450, 941
HinfI GANTC 2 cut(s) 128, 860
HpaII CCGG 4 cut(s) 185, 303, 489, 750
HphI GGTGA 1 cut(s) 40
Hpy166II GTNNAC 4 cut(s) 726, 745, 763, 834
Hpy188I TCNGA 5 cut(s) 79, 286, 588, 841, 859
Hpy188III TCNNGA 4 cut(s) 52, 524, 651, 1010
Hpy8I GTNNAC 4 cut(s) 726, 745, 763, 834
Hpy99I CGWCG 2 cut(s) 368, 525
HpyAV CCTTC 4 cut(s) 268, 817, 931, 968
HpyCH4III ACNGT 4 cut(s) 201, 322, 648, 880
HpyCH4IV ACGT 1 cut(s) 85
HpyCH4V TGCA 9 cut(s) 64, 269, 484, 644, 681, 692, 703, 818, 932
HpyF10VI GCNNNNNNNGC 5 cut(s) 338, 347, 395, 693, 926
HpyF3I CTNAG 3 cut(s) 161, 333, 870
HpySE526I ACGT 1 cut(s) 85
Hsp92I GRCGYC 2 cut(s) 363, 520
Hsp92II CATG 4 cut(s) 55, 212, 607, 1019
HspAI GCGC 3 cut(s) 656, 708, 996
KflI GGGWCCC 1 cut(s) 553
Ksp22I TGATCA 1 cut(s) 48
Kzo9I GATC 4 cut(s) 48, 74, 534, 1012
LmnI GCTCC 2 cut(s) 653, 917
Lsp1109I GCAGC 5 cut(s) 382, 693, 727, 916, 985
LweI GCATC 3 cut(s) 218, 223, 256
MaeI CTAG 5 cut(s) 111, 416, 441, 665, 1027
MaeII ACGT 1 cut(s) 85
MaeIII GTNAC 1 cut(s) 905
MalI GATC 4 cut(s) 50, 76, 536, 1014
MboI GATC 4 cut(s) 48, 74, 534, 1012
MboII GAAGA 1 cut(s) 973
MluCI AATT 5 cut(s) 180, 426, 475, 512, 562
MlyI GAGTC 1 cut(s) 854
MmeI TCCRAC 1 cut(s) 200
MnlI CCTC 9 cut(s) 8, 63, 183, 217, 247, 485, 556, 838, 930
MseI TTAA 1 cut(s) 582
MslI CAYNNNNRTG 1 cut(s) 1014
MspA1I CMGCKG 1 cut(s) 718
MspI CCGG 4 cut(s) 185, 303, 489, 750
MspR9I CCNGG 5 cut(s) 186, 360, 558, 767, 903
MvaI CCWGG 4 cut(s) 360, 558, 767, 903
MvnI CGCG 1 cut(s) 708
MwoI GCNNNNNNNGC 5 cut(s) 338, 347, 395, 693, 926
NciI CCSGG 1 cut(s) 186
NdeII GATC 4 cut(s) 48, 74, 534, 1012
NlaIII CATG 4 cut(s) 55, 212, 607, 1019
NlaIV GGNNCC 4 cut(s) 554, 555, 771, 919
PagI TCATGA 1 cut(s) 51
PfeI GAWTC 1 cut(s) 128
PflMI CCANNNNNTGG 1 cut(s) 811
PkrI GCNGC 6 cut(s) 397, 683, 686, 717, 931, 1000
PleI GAGTC 1 cut(s) 854
PpsI GAGTC 1 cut(s) 854
PpuMI RGGWCCY 1 cut(s) 553
Psp5II RGGWCCY 1 cut(s) 553
Psp6I CCWGG 4 cut(s) 358, 556, 765, 901
PspGI CCWGG 4 cut(s) 358, 556, 765, 901
PspN4I GGNNCC 4 cut(s) 554, 555, 771, 919
PspPI GGNCC 3 cut(s) 494, 553, 769
PspPPI RGGWCCY 1 cut(s) 553
PstI CTGCAG 1 cut(s) 683
PstNI CAGNNNCTG 1 cut(s) 395
PvuII CAGCTG 1 cut(s) 718
RsaI GTAC 2 cut(s) 190, 466
RsaNI GTAC 2 cut(s) 189, 465
RseI CAYNNNNRTG 1 cut(s) 1014
SaqAI TTAA 1 cut(s) 582
SatI GCNGC 6 cut(s) 396, 682, 685, 716, 930, 999
Sau3AI GATC 4 cut(s) 48, 74, 534, 1012
Sau96I GGNCC 3 cut(s) 494, 553, 769
SchI GAGTC 1 cut(s) 854
ScrFI CCNGG 5 cut(s) 186, 360, 558, 767, 903
SfaNI GCATC 3 cut(s) 218, 223, 256
SfcI CTRYAG 2 cut(s) 103, 679
SinI GGWCC 2 cut(s) 553, 769
SmiMI CAYNNNNRTG 1 cut(s) 1014
Sse9I AATT 5 cut(s) 180, 426, 475, 512, 562
SsiI CCGC 2 cut(s) 685, 734
SspMI CTAG 5 cut(s) 111, 416, 441, 665, 1027
StyD4I CCNGG 5 cut(s) 184, 358, 556, 765, 901
TaaI ACNGT 4 cut(s) 201, 322, 648, 880
TaiI ACGT 1 cut(s) 88
TaqI TCGA 3 cut(s) 239, 345, 523
TasI AATT 5 cut(s) 180, 426, 475, 512, 562
TatI WGTACW 1 cut(s) 464
TauI GCSGC 1 cut(s) 687
TfiI GAWTC 1 cut(s) 128
Tru1I TTAA 1 cut(s) 582
Tru9I TTAA 1 cut(s) 582
TscAI CASTG 3 cut(s) 439, 651, 683
TseI GCWGC 5 cut(s) 395, 681, 715, 929, 998
TspDTI ATGAA 3 cut(s) 243, 913, 987
TspRI CASTG 3 cut(s) 439, 651, 683
Van91I CCANNNNNTGG 1 cut(s) 811
VpaK11BI GGWCC 2 cut(s) 553, 769
XspI CTAG 5 cut(s) 111, 416, 441, 665, 1027
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.