pycom111g00800

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_111
OG0003993
Physical Location & Seq
Reverse (-)
544281 .. 545737
1457 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom111g00800.1

Sequence Viewer

Length: 1023 bp
ATGAGAGCACGTGTCCAAATTCGTAGAGAGAGAGAGGAGAAAATGAAGTTATGGAGGAGAGGGTTGTTTGTGGTGTTGGTTATGATGTTTATGCAGGGGAAGGAATCAGAGGGACAGTTAGTAGAAAACTTCTACAGCGCTAGTTGTCCAAATGTTGAATCCATAGTGAACCAGGCAGTCTCTCGGAAAAGAGATCAAACGATTATCACACTCGCGGCGACTCTGCGATTATTTTTCCATGACTGCTTTGTTGAGGGATGCGATGCATCGATCATTATTGCTTCGCCAAATGGGGACGCAGAGAAGGATTTTGCCGATAATCTTTCATTAGCAGGAGACGGGTTTGACACCGTGATCAAGGCAAAGCAAGCAGTGGAAGCACAATGCCCTGGCGTCGTGTCTTGCGCTGACATTCTGGCTGTCGCTGCCCGCGACTGTGTAGTCCTTGCAGGAGGCCCTTCATTCCCTGTGGAATTGGGACGCCGTGATGGACTCATCTCGAAAGCTTCCCGTGTGGCTGGGAACTTGCCAGAACCGACCTTTAATCTCAACCAACTCACCACCATGTTTGCCATACACAATCTTTCCCTAACGGATGTCATTGCGTTGTCTGGAGCACATACTCTTGGCTTTTCACACTGCAATCGCTTCTCAAACCGCCTCTACAACTTCTCGTCGTCCTCTCCTGTCGACCCTTCTCTTAATCCTGACTACGCCAAGCAGTTGATGGCAACCTGCCCCAAAGTGGTAGACCCCAACATTGTCATGACCTTGGATCCTGACACTTCCTTCACATTTGACAACGCTTATTACAGAAACTTGGTTGCCGGGAAAGGGTTGTTGAGTTCAGACCAGGTTCTATTCTCTGACTCCGCATCTCGGTCTACTGTCCTCGATTTCGCTAACAACGCAGATAACTTCAACGGAGCGTTTGTCACCGCCATGAGGAAACTCGGAAGGTTCGGCGTCAAGACTGGTAATCAAGGGGAGATCAGGAGAGACTGCACCACCTTCAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

341

Amino Acids

37.15

Weight (kDa)

6.44

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 59 - 303 5.2e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 440
Acc36I ACCTGC 1 cut(s) 743
AccI GTMKAC 3 cut(s) 690, 750, 884
AccII CGCG 2 cut(s) 215, 432
AciI CCGC 5 cut(s) 215, 430, 658, 873, 939
AclWI GGATC 2 cut(s) 770, 783
AcsI RAATTY 1 cut(s) 18
AcvI CACGTG 1 cut(s) 11
AcyI GRCGYC 3 cut(s) 393, 481, 966
AfeI AGCGCT 1 cut(s) 139
AfiI CCNNNNNNNGG 4 cut(s) 745, 834, 879, 945
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 3 cut(s) 158, 922, 1015
AjnI CCWGG 3 cut(s) 171, 388, 852
AluBI AGCT 1 cut(s) 506
AluI AGCT 1 cut(s) 506
Alw21I GWGCWC 2 cut(s) 10, 619
Alw26I GTCTC 3 cut(s) 184, 330, 993
AlwI GGATC 2 cut(s) 770, 783
Aor51HI AGCGCT 1 cut(s) 139
AoxI GGCC 1 cut(s) 454
ApeKI GCWGC 1 cut(s) 425
ApoI RAATTY 1 cut(s) 18
AspLEI GCGC 2 cut(s) 140, 407
AspS9I GGNCC 1 cut(s) 455
AsuC2I CCSGG 1 cut(s) 829
AsuHPI GGTGA 2 cut(s) 550, 928
BamHI GGATCC 1 cut(s) 775
BbrPI CACGTG 1 cut(s) 11
Bbv12I GWGCWC 2 cut(s) 10, 619
BbvI GCAGC 1 cut(s) 412
BccI CCATC 2 cut(s) 482, 721
BceAI ACGGC 1 cut(s) 468
BciT130I CCWGG 3 cut(s) 173, 390, 854
BclI TGATCA 1 cut(s) 354
BcnI CCSGG 1 cut(s) 829
BcoDI GTCTC 3 cut(s) 184, 330, 993
BfaI CTAG 1 cut(s) 141
BfmI CTRYAG 1 cut(s) 133
BfoI RGCGCY 1 cut(s) 141
BfuAI ACCTGC 1 cut(s) 743
BisI GCNGC 2 cut(s) 216, 426
BlsI GCNGC 2 cut(s) 217, 427
Bme1390I CCNGG 4 cut(s) 173, 390, 829, 854
BmgT120I GGNCC 1 cut(s) 455
BmiI GGNNCC 1 cut(s) 777
BmrFI CCNGG 4 cut(s) 173, 390, 829, 854
BmsI GCATC 4 cut(s) 248, 253, 275, 884
BpmI CTGGAG 1 cut(s) 633
BpuMI CCSGG 1 cut(s) 829
Bsa29I ATCGAT 1 cut(s) 269
BsaAI YACGTR 1 cut(s) 11
BsaHI GRCGYC 3 cut(s) 393, 481, 966
BsaJI CCNNGG 2 cut(s) 388, 771
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 4 cut(s) 745, 834, 879, 945
Bse1I ACTGG 1 cut(s) 979
Bse3DI GCAATG 1 cut(s) 600
BseBI CCWGG 3 cut(s) 173, 390, 854
BseCI ATCGAT 1 cut(s) 269
BseDI CCNNGG 2 cut(s) 388, 771
BseGI GGATG 2 cut(s) 263, 601
BseLI CCNNNNNNNGG 4 cut(s) 745, 834, 879, 945
BseMI GCAATG 1 cut(s) 600
BseNI ACTGG 1 cut(s) 979
BseRI GAGGAG 2 cut(s) 50, 70
BseXI GCAGC 1 cut(s) 412
BseYI CCCAGC 1 cut(s) 518
BsgI GTGCAG 1 cut(s) 988
Bsh1236I CGCG 2 cut(s) 215, 432
BshFI GGCC 1 cut(s) 456
BshVI ATCGAT 1 cut(s) 269
BsiHKAI GWGCWC 2 cut(s) 10, 619
BsiSI CCGG 1 cut(s) 828
BslFI GGGAC 3 cut(s) 126, 308, 492
BslI CCNNNNNNNGG 4 cut(s) 745, 834, 879, 945
BsmAI GTCTC 3 cut(s) 184, 330, 993
BsmBI CGTCTC 1 cut(s) 330
BsmFI GGGAC 3 cut(s) 126, 308, 492
BsnI GGCC 1 cut(s) 456
Bsp1286I GDGCHC 2 cut(s) 10, 619
Bsp143I GATC 5 cut(s) 193, 270, 354, 775, 990
BspACI CCGC 5 cut(s) 215, 430, 658, 873, 939
BspANI GGCC 1 cut(s) 456
BspDI ATCGAT 1 cut(s) 269
BspFNI CGCG 2 cut(s) 215, 432
BspHI TCATGA 2 cut(s) 765, 1019
BspLI GGNNCC 1 cut(s) 777
BspMI ACCTGC 1 cut(s) 743
BspPI GGATC 2 cut(s) 770, 783
BsrDI GCAATG 1 cut(s) 600
BsrI ACTGG 1 cut(s) 979
BssECI CCNNGG 2 cut(s) 388, 771
BssMI GATC 5 cut(s) 193, 270, 354, 775, 990
BssNI GRCGYC 3 cut(s) 393, 481, 966
BssT1I CCWWGG 1 cut(s) 771
Bst2UI CCWGG 3 cut(s) 173, 390, 854
Bst4CI ACNGT 4 cut(s) 117, 352, 437, 889
BstACI GRCGYC 3 cut(s) 393, 481, 966
BstBAI YACGTR 1 cut(s) 11
BstC8I GCNNGC 2 cut(s) 369, 430
BstF5I GGATG 2 cut(s) 263, 601
BstFNI CGCG 2 cut(s) 215, 432
BstH2I RGCGCY 1 cut(s) 141
BstHHI GCGC 2 cut(s) 140, 407
BstKTI GATC 5 cut(s) 196, 273, 357, 778, 993
BstMAI GTCTC 3 cut(s) 184, 330, 993
BstMBI GATC 5 cut(s) 193, 270, 354, 775, 990
BstMWI GCNNNNNNNGC 4 cut(s) 368, 377, 425, 908
BstNI CCWGG 3 cut(s) 173, 390, 854
BstSCI CCNGG 4 cut(s) 171, 388, 827, 852
BstSFI CTRYAG 1 cut(s) 133
BstUI CGCG 2 cut(s) 215, 432
BstV1I GCAGC 1 cut(s) 412
BstX2I RGATCY 1 cut(s) 775
BstYI RGATCY 1 cut(s) 775
Bsu15I ATCGAT 1 cut(s) 269
BsuRI GGCC 1 cut(s) 456
BsuTUI ATCGAT 1 cut(s) 269
BtgZI GCGATG 1 cut(s) 276
BtsCI GGATG 2 cut(s) 263, 601
BtsI GCAGTG 2 cut(s) 378, 637
BtsIMutI CAGTG 2 cut(s) 378, 637
BveI ACCTGC 1 cut(s) 743
Cac8I GCNNGC 2 cut(s) 369, 430
CciI TCATGA 2 cut(s) 765, 1019
CfoI GCGC 2 cut(s) 140, 407
Cfr13I GGNCC 1 cut(s) 455
ClaI ATCGAT 1 cut(s) 269
CseI GACGC 4 cut(s) 305, 382, 489, 955
CsiI ACCWGGT 1 cut(s) 852
CspCI CAANNNNNGTGG 2 cut(s) 550, 585
CviAII CATG 5 cut(s) 239, 565, 766, 943, 1020
CviJI RGCY 5 cut(s) 419, 456, 506, 518, 630
CviKI_1 RGCY 5 cut(s) 419, 456, 506, 518, 630
DpnI GATC 5 cut(s) 195, 272, 356, 777, 992
DpnII GATC 5 cut(s) 193, 270, 354, 775, 990
DrdI GACNNNNNNGTC 1 cut(s) 440
DseDI GACNNNNNNGTC 1 cut(s) 440
Eco130I CCWWGG 1 cut(s) 771
Eco47III AGCGCT 1 cut(s) 139
Eco72I CACGTG 1 cut(s) 11
EcoO109I RGGNCCY 1 cut(s) 455
EcoRII CCWGG 3 cut(s) 171, 388, 852
EcoT14I CCWWGG 1 cut(s) 771
EcoT22I ATGCAT 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 771
Esp3I CGTCTC 1 cut(s) 330
FaeI CATG 5 cut(s) 242, 568, 769, 946, 1023
FaqI GGGAC 3 cut(s) 126, 308, 492
FatI CATG 5 cut(s) 238, 564, 765, 942, 1019
FauI CCCGC 1 cut(s) 437
FbaI TGATCA 1 cut(s) 354
FblI GTMKAC 3 cut(s) 690, 750, 884
Fnu4HI GCNGC 2 cut(s) 216, 426
FokI GGATG 2 cut(s) 270, 608
Fsp4HI GCNGC 2 cut(s) 216, 426
FspBI CTAG 1 cut(s) 141
GlaI GCGC 2 cut(s) 139, 406
GluI GCNGC 2 cut(s) 216, 426
GsaI CCCAGC 1 cut(s) 522
GsuI CTGGAG 1 cut(s) 633
HaeII RGCGCY 1 cut(s) 141
HaeIII GGCC 1 cut(s) 456
HapII CCGG 1 cut(s) 828
HgaI GACGC 4 cut(s) 305, 382, 489, 955
HhaI GCGC 2 cut(s) 140, 407
Hin1I GRCGYC 3 cut(s) 393, 481, 966
Hin1II CATG 5 cut(s) 242, 568, 769, 946, 1023
Hin6I GCGC 2 cut(s) 138, 405
HinP1I GCGC 2 cut(s) 138, 405
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 504
HinfI GANTC 5 cut(s) 104, 158, 220, 492, 869
HpaII CCGG 1 cut(s) 828
HphI GGTGA 2 cut(s) 550, 928
Hpy166II GTNNAC 4 cut(s) 169, 691, 751, 885
Hpy188I TCNGA 5 cut(s) 109, 186, 850, 868, 956
Hpy188III TCNNGA 8 cut(s) 499, 612, 707, 766, 779, 970, 994, 1020
Hpy8I GTNNAC 4 cut(s) 169, 691, 751, 885
Hpy99I CGWCG 2 cut(s) 398, 679
HpyAV CCTTC 7 cut(s) 94, 298, 468, 705, 799, 951, 1021
HpyCH4III ACNGT 4 cut(s) 117, 352, 437, 889
HpyCH4IV ACGT 1 cut(s) 10
HpyCH4V TGCA 5 cut(s) 94, 266, 449, 642, 1005
HpyF10VI GCNNNNNNNGC 4 cut(s) 368, 377, 425, 908
HpySE526I ACGT 1 cut(s) 10
Hsp92I GRCGYC 3 cut(s) 393, 481, 966
Hsp92II CATG 5 cut(s) 242, 568, 769, 946, 1023
HspAI GCGC 2 cut(s) 138, 405
Ksp22I TGATCA 1 cut(s) 354
Kzo9I GATC 5 cut(s) 193, 270, 354, 775, 990
LmnI GCTCC 2 cut(s) 614, 926
Lsp1109I GCAGC 1 cut(s) 412
LweI GCATC 4 cut(s) 248, 253, 275, 884
MabI ACCWGGT 1 cut(s) 852
MaeI CTAG 1 cut(s) 141
MaeII ACGT 1 cut(s) 10
MaeIII GTNAC 1 cut(s) 934
MalI GATC 5 cut(s) 195, 272, 356, 777, 992
MboI GATC 5 cut(s) 193, 270, 354, 775, 990
MflI RGATCY 1 cut(s) 775
MhlI GDGCHC 2 cut(s) 10, 619
MluCI AATT 3 cut(s) 18, 473, 1015
MlyI GAGTC 3 cut(s) 214, 486, 863
Mph1103I ATGCAT 1 cut(s) 268
MseI TTAA 2 cut(s) 543, 702
MslI CAYNNNNRTG 3 cut(s) 563, 764, 941
MspI CCGG 1 cut(s) 828
MspR9I CCNGG 4 cut(s) 173, 390, 829, 854
MvaI CCWGG 3 cut(s) 173, 390, 854
MvnI CGCG 2 cut(s) 215, 432
MwoI GCNNNNNNNGC 4 cut(s) 368, 377, 425, 908
NciI CCSGG 1 cut(s) 829
NdeII GATC 5 cut(s) 193, 270, 354, 775, 990
NlaIII CATG 5 cut(s) 242, 568, 769, 946, 1023
NlaIV GGNNCC 1 cut(s) 777
NmuCI GTSAC 1 cut(s) 934
NsiI ATGCAT 1 cut(s) 268
PagI TCATGA 2 cut(s) 765, 1019
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PfeI GAWTC 2 cut(s) 104, 158
PkrI GCNGC 2 cut(s) 217, 427
PleI GAGTC 3 cut(s) 214, 486, 863
PmaCI CACGTG 1 cut(s) 11
PmlI CACGTG 1 cut(s) 11
PpsI GAGTC 3 cut(s) 214, 486, 863
Ppu21I YACGTR 1 cut(s) 11
Psp6I CCWGG 3 cut(s) 171, 388, 852
PspCI CACGTG 1 cut(s) 11
PspFI CCCAGC 1 cut(s) 518
PspGI CCWGG 3 cut(s) 171, 388, 852
PspN4I GGNNCC 1 cut(s) 777
PspPI GGNCC 1 cut(s) 455
PsuI RGATCY 1 cut(s) 775
RseI CAYNNNNRTG 3 cut(s) 563, 764, 941
SalI GTCGAC 1 cut(s) 689
SaqAI TTAA 2 cut(s) 543, 702
SatI GCNGC 2 cut(s) 216, 426
Sau3AI GATC 5 cut(s) 193, 270, 354, 775, 990
Sau96I GGNCC 1 cut(s) 455
SchI GAGTC 3 cut(s) 214, 486, 863
ScrFI CCNGG 4 cut(s) 173, 390, 829, 854
SduI GDGCHC 2 cut(s) 10, 619
SetI ASST 8 cut(s) 13, 508, 542, 737, 773, 858, 962, 1013
SexAI ACCWGGT 1 cut(s) 852
SfaNI GCATC 4 cut(s) 248, 253, 275, 884
SfcI CTRYAG 1 cut(s) 133
SmiMI CAYNNNNRTG 3 cut(s) 563, 764, 941
Sse9I AATT 3 cut(s) 18, 473, 1015
SsiI CCGC 5 cut(s) 215, 430, 658, 873, 939
SspMI CTAG 1 cut(s) 141
StyD4I CCNGG 4 cut(s) 171, 388, 827, 852
StyI CCWWGG 1 cut(s) 771
TaaI ACNGT 4 cut(s) 117, 352, 437, 889
TaiI ACGT 1 cut(s) 13
TaqI TCGA 4 cut(s) 269, 500, 690, 894
TaqII GACCGA 1 cut(s) 870
TasI AATT 3 cut(s) 18, 473, 1015
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 104, 158
Tru1I TTAA 2 cut(s) 543, 702
Tru9I TTAA 2 cut(s) 543, 702
TscAI CASTG 2 cut(s) 378, 644
TseFI GTSAC 1 cut(s) 934
TseI GCWGC 1 cut(s) 425
Tsp45I GTSAC 1 cut(s) 934
TspDTI ATGAA 4 cut(s) 59, 315, 450, 1008
TspGWI ACGGA 2 cut(s) 608, 939
TspRI CASTG 2 cut(s) 378, 644
XapI RAATTY 1 cut(s) 18
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XmiI GTMKAC 3 cut(s) 690, 750, 884
XspI CTAG 1 cut(s) 141
Zsp2I ATGCAT 1 cut(s) 268
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.