Rmu_sc0016745.1_g000002

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0016745.1
OG0003993
Physical Location & Seq
Reverse (-)
2278 .. 3464
1187 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0016745.1_g000002.1.cds

Sequence Viewer

Length: 1071 bp
atggaggtatggagaggcttgttggtgatttcgggtttggttttgatgatgattgatatacaggggaggggatcagaagcacgtttagtagaaaacttctacagctctagttgtccaaatgttgaattcatagtgaagcaggccgtctctacgaaactcagccaaaaccctccaacaattccgggtactctgcgactgtttttccatgactgctttattgagggatgcgatgcctcgataatgattgcttcatcaaatggggatgcagagaaggattattcagataatctttctttggccggagatggatttgacaccgtagtcaaggctaagcaagcagtcgaagcacaatgccctggcatcgtctcttgtgccgacattttggcactggctgcccgagatgttgtagtcctagtaagtctaattatcagtgtctttagtgtgaaagcttacgaaaaatgtactaatcataattttgtgcaggccggaggccctacgtttaatgtagaattggggcgtcgagatggactgatctcgaaagcctctcgggtccctggcaatttgcctgaatcattttttaacctgaagcaactcaacaccatgtttgccaaacacaacctttcccaaactgatgttattgcactgtcgggagcgcatacactaggcttttcgcactgcagccgctttgcaagccgtttgtactcattttcaaactcatctgccgttgacccttctttggatccaggctacgccaagcagctgatgtcaacttgcccgcgagatgtgggcaccagcatacctgtcaacctggacccaactccacaaacatttgacaatgcttattaccagaacttggttgcaaggaagggcttgttgacttcagatgaggttctgttctctgactctgcttctaagcctactgtcatagattttgccaacaaccctggtaacttcaatggagccttcatcaccgcaatgaggaagcttggcagggtcggtgtgaagactggtaatgaaggcgagataaggaaagactgcgctgcgttcaatcatgatcatggtgatagctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

356

Amino Acids

38.38

Weight (kDa)

5.82

Isoelectric Point (pI)

27.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB1I GGYRCC 1 cut(s) 788
AccB7I CCANNNNNTGG 1 cut(s) 853
AccII CGCG 1 cut(s) 778
AciI CCGC 3 cut(s) 682, 776, 972
AclWI GGATC 3 cut(s) 79, 734, 747
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 605, 864
AcyI GRCGYC 1 cut(s) 517
AfaI GTAC 3 cut(s) 187, 463, 701
AfiI CCNNNNNNNGG 3 cut(s) 736, 853, 978
AgsI TTSAA 4 cut(s) 125, 711, 955, 1048
AjnI CCWGG 5 cut(s) 355, 553, 742, 807, 943
AluBI AGCT 5 cut(s) 105, 449, 760, 985, 1068
AluI AGCT 5 cut(s) 105, 449, 760, 985, 1068
Alw26I GTCTC 2 cut(s) 151, 370
AlwI GGATC 3 cut(s) 79, 734, 747
Ama87I CYCGRG 2 cut(s) 396, 546
AoxI GGCC 4 cut(s) 141, 297, 483, 490
ApeKI GCWGC 4 cut(s) 392, 678, 757, 1040
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 655, 1040
AspS9I GGNCC 3 cut(s) 491, 550, 811
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 2 cut(s) 37, 961
AvaI CYCGRG 2 cut(s) 396, 546
AvaII GGWCC 2 cut(s) 550, 811
BaeGI GKGCMC 1 cut(s) 791
BamHI GGATCC 1 cut(s) 739
BanI GGYRCC 1 cut(s) 788
BbsI GAAGAC 1 cut(s) 1010
BbvI GCAGC 4 cut(s) 379, 690, 769, 1027
BccI CCATC 2 cut(s) 299, 518
BceAI ACGGC 3 cut(s) 128, 678, 707
BciT130I CCWGG 5 cut(s) 357, 555, 744, 809, 945
BclI TGATCA 1 cut(s) 1054
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 151, 370
BfaI CTAG 4 cut(s) 108, 413, 662, 1069
BfmI CTRYAG 2 cut(s) 100, 676
BisI GCNGC 5 cut(s) 393, 679, 682, 758, 1041
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 5 cut(s) 394, 680, 683, 759, 1042
Bme1390I CCNGG 6 cut(s) 183, 357, 555, 744, 809, 945
Bme18I GGWCC 2 cut(s) 550, 811
BmeT110I CYCGRG 2 cut(s) 396, 546
BmgT120I GGNCC 3 cut(s) 491, 550, 811
BmiI GGNNCC 6 cut(s) 551, 552, 741, 790, 813, 961
BmrFI CCNGG 6 cut(s) 183, 357, 555, 744, 809, 945
BmsI GCATC 4 cut(s) 215, 220, 253, 369
BpiI GAAGAC 1 cut(s) 1010
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 1 cut(s) 517
BsaJI CCNNGG 3 cut(s) 355, 553, 943
Bsc4I CCNNNNNNNGG 3 cut(s) 736, 853, 978
Bse1I ACTGG 2 cut(s) 393, 1012
Bse3DI GCAATG 1 cut(s) 981
BseBI CCWGG 5 cut(s) 357, 555, 744, 809, 945
BseDI CCNNGG 3 cut(s) 355, 553, 943
BseGI GGATG 2 cut(s) 230, 268
BseLI CCNNNNNNNGG 3 cut(s) 736, 853, 978
BseMI GCAATG 1 cut(s) 981
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 2 cut(s) 393, 1012
BseSI GKGCMC 1 cut(s) 791
BseXI GCAGC 4 cut(s) 379, 690, 769, 1027
BsgI GTGCAG 1 cut(s) 500
Bsh1236I CGCG 1 cut(s) 778
BshFI GGCC 4 cut(s) 143, 299, 485, 492
BshNI GGYRCC 1 cut(s) 788
BsiHKCI CYCGRG 2 cut(s) 396, 546
BsiSI CCGG 3 cut(s) 182, 300, 486
BslFI GGGAC 1 cut(s) 536
BslI CCNNNNNNNGG 3 cut(s) 736, 853, 978
BsmAI GTCTC 2 cut(s) 151, 370
BsmBI CGTCTC 2 cut(s) 151, 370
BsmFI GGGAC 1 cut(s) 536
BsnI GGCC 4 cut(s) 143, 299, 485, 492
BsoBI CYCGRG 2 cut(s) 396, 546
Bsp1286I GDGCHC 1 cut(s) 791
Bsp143I GATC 4 cut(s) 71, 531, 739, 1054
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 682, 776, 972
BspANI GGCC 4 cut(s) 143, 299, 485, 492
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 778
BspHI TCATGA 1 cut(s) 1051
BspLI GGNNCC 6 cut(s) 551, 552, 741, 790, 813, 961
BspMAI CTGCAG 1 cut(s) 680
BspPI GGATC 3 cut(s) 79, 734, 747
BspT107I GGYRCC 1 cut(s) 788
BsrDI GCAATG 1 cut(s) 981
BsrI ACTGG 2 cut(s) 393, 1012
BssECI CCNNGG 3 cut(s) 355, 553, 943
BssMI GATC 4 cut(s) 71, 531, 739, 1054
BssNI GRCGYC 1 cut(s) 517
Bst2UI CCWGG 5 cut(s) 357, 555, 744, 809, 945
Bst4CI ACNGT 4 cut(s) 198, 319, 645, 922
BstACI GRCGYC 1 cut(s) 517
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 5 cut(s) 141, 336, 483, 691, 776
BstDEI CTNAG 3 cut(s) 158, 330, 912
BstF5I GGATG 2 cut(s) 230, 268
BstFNI CGCG 1 cut(s) 778
BstHHI GCGC 2 cut(s) 655, 1040
BstKTI GATC 4 cut(s) 74, 534, 742, 1057
BstMAI GTCTC 2 cut(s) 151, 370
BstMBI GATC 4 cut(s) 71, 531, 739, 1054
BstMWI GCNNNNNNNGC 4 cut(s) 335, 344, 392, 690
BstNI CCWGG 5 cut(s) 357, 555, 744, 809, 945
BstSCI CCNGG 6 cut(s) 181, 355, 553, 742, 807, 943
BstSFI CTRYAG 2 cut(s) 100, 676
BstSLI GKGCMC 1 cut(s) 791
BstUI CGCG 1 cut(s) 778
BstV1I GCAGC 4 cut(s) 379, 690, 769, 1027
BstV2I GAAGAC 1 cut(s) 1010
BstX2I RGATCY 1 cut(s) 739
BstYI RGATCY 1 cut(s) 739
BsuRI GGCC 4 cut(s) 143, 299, 485, 492
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 230, 268
BtsI GCAGTG 1 cut(s) 673
BtsIMutI CAGTG 4 cut(s) 386, 436, 641, 673
Cac8I GCNNGC 5 cut(s) 141, 336, 483, 691, 776
CciI TCATGA 1 cut(s) 1051
CfoI GCGC 2 cut(s) 655, 1040
Cfr13I GGNCC 3 cut(s) 491, 550, 811
CseI GACGC 1 cut(s) 506
Csp6I GTAC 3 cut(s) 186, 462, 700
CviAII CATG 4 cut(s) 206, 601, 1052, 1058
CviQI GTAC 3 cut(s) 186, 462, 700
DdeI CTNAG 3 cut(s) 158, 330, 912
DpnI GATC 4 cut(s) 73, 533, 741, 1056
DpnII GATC 4 cut(s) 71, 531, 739, 1054
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 550, 811
Eco57I CTGAAG 2 cut(s) 605, 864
Eco88I CYCGRG 2 cut(s) 396, 546
EcoO109I RGGNCCY 2 cut(s) 491, 550
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 5 cut(s) 355, 553, 742, 807, 943
Esp3I CGTCTC 2 cut(s) 151, 370
FaeI CATG 4 cut(s) 209, 604, 1055, 1061
FaqI GGGAC 1 cut(s) 536
FatI CATG 4 cut(s) 205, 600, 1051, 1057
FauI CCCGC 1 cut(s) 783
FbaI TGATCA 1 cut(s) 1054
Fnu4HI GCNGC 5 cut(s) 393, 679, 682, 758, 1041
FokI GGATG 2 cut(s) 237, 275
Fsp4HI GCNGC 5 cut(s) 393, 679, 682, 758, 1041
FspBI CTAG 4 cut(s) 108, 413, 662, 1069
GlaI GCGC 2 cut(s) 654, 1039
GluI GCNGC 5 cut(s) 393, 679, 682, 758, 1041
HaeIII GGCC 4 cut(s) 143, 299, 485, 492
HapII CCGG 3 cut(s) 182, 300, 486
HgaI GACGC 1 cut(s) 506
HhaI GCGC 2 cut(s) 655, 1040
Hin1I GRCGYC 1 cut(s) 517
Hin1II CATG 4 cut(s) 209, 604, 1055, 1061
Hin6I GCGC 2 cut(s) 653, 1038
HinP1I GCGC 2 cut(s) 653, 1038
HincII GTYRAC 4 cut(s) 727, 768, 805, 876
HindII GTYRAC 4 cut(s) 727, 768, 805, 876
HindIII AAGCTT 2 cut(s) 447, 983
HinfI GANTC 2 cut(s) 569, 902
HpaII CCGG 3 cut(s) 182, 300, 486
HphI GGTGA 2 cut(s) 37, 961
Hpy166II GTNNAC 4 cut(s) 727, 768, 805, 876
Hpy188I TCNGA 4 cut(s) 76, 283, 883, 901
Hpy188III TCNNGA 4 cut(s) 521, 535, 648, 1052
Hpy8I GTNNAC 4 cut(s) 727, 768, 805, 876
Hpy99I CGWCG 1 cut(s) 522
HpyAV CCTTC 5 cut(s) 265, 741, 859, 973, 1010
HpyCH4III ACNGT 4 cut(s) 198, 319, 645, 922
HpyCH4IV ACGT 2 cut(s) 82, 497
HpyCH4V TGCA 6 cut(s) 266, 481, 641, 678, 689, 860
HpyF10VI GCNNNNNNNGC 4 cut(s) 335, 344, 392, 690
HpyF3I CTNAG 3 cut(s) 158, 330, 912
HpySE526I ACGT 2 cut(s) 82, 497
Hsp92I GRCGYC 1 cut(s) 517
Hsp92II CATG 4 cut(s) 209, 604, 1055, 1061
HspAI GCGC 2 cut(s) 653, 1038
KflI GGGWCCC 1 cut(s) 550
Ksp22I TGATCA 1 cut(s) 1054
Kzo9I GATC 4 cut(s) 71, 531, 739, 1054
LmnI GCTCC 2 cut(s) 650, 959
Lsp1109I GCAGC 4 cut(s) 379, 690, 769, 1027
LweI GCATC 4 cut(s) 215, 220, 253, 369
MaeI CTAG 4 cut(s) 108, 413, 662, 1069
MaeII ACGT 2 cut(s) 82, 497
MaeIII GTNAC 1 cut(s) 947
MalI GATC 4 cut(s) 73, 533, 741, 1056
MboI GATC 4 cut(s) 71, 531, 739, 1054
MboII GAAGA 1 cut(s) 1015
MflI RGATCY 1 cut(s) 739
MhlI GDGCHC 1 cut(s) 791
MluCI AATT 6 cut(s) 125, 177, 423, 472, 509, 559
MlyI GAGTC 1 cut(s) 896
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 9 cut(s) 8, 60, 180, 214, 244, 482, 553, 880, 972
MseI TTAA 2 cut(s) 501, 579
MslI CAYNNNNRTG 2 cut(s) 974, 1056
MspA1I CMGCKG 1 cut(s) 760
MspI CCGG 3 cut(s) 182, 300, 486
MspR9I CCNGG 6 cut(s) 183, 357, 555, 744, 809, 945
MvaI CCWGG 5 cut(s) 357, 555, 744, 809, 945
MvnI CGCG 1 cut(s) 778
MwoI GCNNNNNNNGC 4 cut(s) 335, 344, 392, 690
NciI CCSGG 1 cut(s) 183
NdeII GATC 4 cut(s) 71, 531, 739, 1054
NlaIII CATG 4 cut(s) 209, 604, 1055, 1061
NlaIV GGNNCC 6 cut(s) 551, 552, 741, 790, 813, 961
PagI TCATGA 1 cut(s) 1051
PfeI GAWTC 1 cut(s) 569
PflMI CCANNNNNTGG 1 cut(s) 853
PkrI GCNGC 5 cut(s) 394, 680, 683, 759, 1042
PleI GAGTC 1 cut(s) 896
PpsI GAGTC 1 cut(s) 896
PpuMI RGGWCCY 1 cut(s) 550
Psp5II RGGWCCY 1 cut(s) 550
Psp6I CCWGG 5 cut(s) 355, 553, 742, 807, 943
PspGI CCWGG 5 cut(s) 355, 553, 742, 807, 943
PspN4I GGNNCC 6 cut(s) 551, 552, 741, 790, 813, 961
PspPI GGNCC 3 cut(s) 491, 550, 811
PspPPI RGGWCCY 1 cut(s) 550
PstI CTGCAG 1 cut(s) 680
PsuI RGATCY 1 cut(s) 739
PvuII CAGCTG 1 cut(s) 760
RsaI GTAC 3 cut(s) 187, 463, 701
RsaNI GTAC 3 cut(s) 186, 462, 700
RseI CAYNNNNRTG 2 cut(s) 974, 1056
SaqAI TTAA 2 cut(s) 501, 579
SatI GCNGC 5 cut(s) 393, 679, 682, 758, 1041
Sau3AI GATC 4 cut(s) 71, 531, 739, 1054
Sau96I GGNCC 3 cut(s) 491, 550, 811
SchI GAGTC 1 cut(s) 896
ScrFI CCNGG 6 cut(s) 183, 357, 555, 744, 809, 945
SduI GDGCHC 1 cut(s) 791
SfaNI GCATC 4 cut(s) 215, 220, 253, 369
SfcI CTRYAG 2 cut(s) 100, 676
SinI GGWCC 2 cut(s) 550, 811
SmiMI CAYNNNNRTG 2 cut(s) 974, 1056
Sse9I AATT 6 cut(s) 125, 177, 423, 472, 509, 559
SsiI CCGC 3 cut(s) 682, 776, 972
SspMI CTAG 4 cut(s) 108, 413, 662, 1069
StyD4I CCNGG 6 cut(s) 181, 355, 553, 742, 807, 943
TaaI ACNGT 4 cut(s) 198, 319, 645, 922
TaiI ACGT 2 cut(s) 85, 500
TaqI TCGA 4 cut(s) 236, 342, 520, 536
TasI AATT 6 cut(s) 125, 177, 423, 472, 509, 559
TatI WGTACW 2 cut(s) 461, 699
TauI GCSGC 1 cut(s) 684
TfiI GAWTC 1 cut(s) 569
Tru1I TTAA 2 cut(s) 501, 579
Tru9I TTAA 2 cut(s) 501, 579
TscAI CASTG 4 cut(s) 393, 436, 648, 680
TseI GCWGC 4 cut(s) 392, 678, 757, 1040
TspDTI ATGAA 4 cut(s) 118, 240, 955, 1029
TspRI CASTG 4 cut(s) 393, 436, 648, 680
Van91I CCANNNNNTGG 1 cut(s) 853
VpaK11BI GGWCC 2 cut(s) 550, 811
XapI RAATTY 1 cut(s) 125
XspI CTAG 4 cut(s) 108, 413, 662, 1069
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.