MD09G1010000.v1.1

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0003993
Physical Location & Seq
Reverse (-)
679939 .. 681272
1334 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1010000.v1.1.491

Sequence Viewer

Length: 1026 bp
ATGGAGATTACACGCAGAGAGAGAGAGAGAGAGAGAGAGAAGAAAATGAAGTTATGGAGGAGAGGGTTGCTTTTGGTGTTGGTTATGATGTTTTCGCAGGGGAAGGAATCAGAGGGACAGTTAGTAGAAAACTTCTACAGCGCTAGTTGTCCAAATGTTGAATCCATAGTGAACCAGGCAGTCTCTCGGAAAAGAGATCAAACGATTATCACACTCGCAGCGACTCTGCGATTATTTCTCCATGACTGCTTTGTTGAGGGATGCGATGCGTCGATCATTATTGCTTCGCCAAACGGGGACGCAGAGAAGAATTTTGCCGATAATCTTTCATTAGCAGGAGACGGGTTTGACACCGTGATCAAGGCAAAGCAAGCAGTGGAAGCACAATGCCCTGGCGTCGTGTCTTGCGCTGACATTCTGGCTGTCGCCGCCCGTGACTGTGTAGTCCTTGCAGGAGGCCCTTCATTCCCCGTGGAATTGGGACGCCGCGATGGACTCATCTCGAAAGCTTCTCGTGTGGCTGGGAACTTGCCAGAACCGACCTTTAATCTCAACCAACTCACCACCATGTTTGCCAAACACAATCTTTCCCTAACCGATGTCATTGCGTTGTCCGGAGCACATACTCTTGGCTTTTCACACTGCAATCGCTTCTCAGACCGCCTCTACAACTTCTCGCCATCCTCTACTGTCGACCCTTCCCTGAATCCTGACTACGCCAAGCAGTTGATGGCAACCTGCCCCATAGCGGTAGACCCCAACATTGTCATGACCTTGGACCCTGACACTCCCTTCACATTTGACAACGCTTATTACAGAAACTTGGTTGCCGGGAAAGGGTTGTTGAGTTCAGACCAGGTTCTATTCTCTGACTCTGCATCTCGGTCTACTGTCCTCAATTTCGCTAACAACGCAGATAACTTCAACGGAGCGTTTGTCACCGCCATGAGGAAGCTCGGAAGGGTCGGCGTCAAGACTGGTAATCAAGGGGAGATCAGGAGAGACTGCACCACCTTCAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

342

Amino Acids

37.19

Weight (kDa)

6.45

Isoelectric Point (pI)

36.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 60 - 304 1.4e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 443
Acc36I ACCTGC 1 cut(s) 746
AccI GTMKAC 3 cut(s) 693, 753, 887
AccII CGCG 1 cut(s) 489
AccIII TCCGGA 1 cut(s) 614
AciI CCGC 5 cut(s) 429, 487, 661, 749, 942
AcsI RAATTY 1 cut(s) 310
AcyI GRCGYC 3 cut(s) 396, 484, 969
AfeI AGCGCT 1 cut(s) 142
AfiI CCNNNNNNNGG 3 cut(s) 748, 837, 948
AgsI TTSAA 3 cut(s) 161, 925, 1018
AjnI CCWGG 3 cut(s) 174, 391, 855
AluBI AGCT 2 cut(s) 509, 955
AluI AGCT 2 cut(s) 509, 955
Alw21I GWGCWC 1 cut(s) 622
Alw26I GTCTC 3 cut(s) 187, 333, 996
Aor13HI TCCGGA 1 cut(s) 614
Aor51HI AGCGCT 1 cut(s) 142
AoxI GGCC 1 cut(s) 457
ApeKI GCWGC 1 cut(s) 218
ApoI RAATTY 1 cut(s) 310
AspLEI GCGC 2 cut(s) 143, 410
AspS9I GGNCC 2 cut(s) 458, 778
AsuC2I CCSGG 1 cut(s) 832
AsuHPI GGTGA 2 cut(s) 553, 931
AvaII GGWCC 1 cut(s) 778
BauI CACGAG 1 cut(s) 513
Bbv12I GWGCWC 1 cut(s) 622
BbvI GCAGC 1 cut(s) 230
BccI CCATC 3 cut(s) 485, 688, 724
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 3 cut(s) 176, 393, 857
BclI TGATCA 1 cut(s) 357
BcnI CCSGG 1 cut(s) 832
BcoDI GTCTC 3 cut(s) 187, 333, 996
BfaI CTAG 1 cut(s) 144
BfmI CTRYAG 1 cut(s) 136
BfoI RGCGCY 1 cut(s) 144
BfuAI ACCTGC 1 cut(s) 746
BisI GCNGC 3 cut(s) 219, 429, 487
BlsI GCNGC 3 cut(s) 220, 430, 488
Bme1390I CCNGG 4 cut(s) 176, 393, 832, 857
Bme18I GGWCC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 458, 778
BmiI GGNNCC 1 cut(s) 780
BmrFI CCNGG 4 cut(s) 176, 393, 832, 857
BmsI GCATC 3 cut(s) 251, 256, 887
BpuMI CCSGG 1 cut(s) 832
BsaHI GRCGYC 3 cut(s) 396, 484, 969
BsaJI CCNNGG 3 cut(s) 391, 471, 774
BsaWI WCCGGW 1 cut(s) 614
BsaXI ACNNNNNCTCC 2 cut(s) 921, 951
Bsc4I CCNNNNNNNGG 3 cut(s) 748, 837, 948
Bse1I ACTGG 1 cut(s) 982
Bse3DI GCAATG 1 cut(s) 603
BseAI TCCGGA 1 cut(s) 614
BseBI CCWGG 3 cut(s) 176, 393, 857
BseDI CCNNGG 3 cut(s) 391, 471, 774
BseGI GGATG 2 cut(s) 266, 680
BseLI CCNNNNNNNGG 3 cut(s) 748, 837, 948
BseMI GCAATG 1 cut(s) 603
BseMII CTCAG 1 cut(s) 669
BseNI ACTGG 1 cut(s) 982
BseRI GAGGAG 1 cut(s) 73
BseXI GCAGC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 521
BsgI GTGCAG 1 cut(s) 991
Bsh1236I CGCG 1 cut(s) 489
BshFI GGCC 1 cut(s) 459
BsiHKAI GWGCWC 1 cut(s) 622
BsiSI CCGG 2 cut(s) 615, 831
BslFI GGGAC 3 cut(s) 129, 311, 495
BslI CCNNNNNNNGG 3 cut(s) 748, 837, 948
BsmAI GTCTC 3 cut(s) 187, 333, 996
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 3 cut(s) 129, 311, 495
BsnI GGCC 1 cut(s) 459
Bsp1286I GDGCHC 1 cut(s) 622
Bsp13I TCCGGA 1 cut(s) 614
Bsp143I GATC 4 cut(s) 196, 273, 357, 993
BspACI CCGC 5 cut(s) 429, 487, 661, 749, 942
BspANI GGCC 1 cut(s) 459
BspCNI CTCAG 1 cut(s) 668
BspEI TCCGGA 1 cut(s) 614
BspFNI CGCG 1 cut(s) 489
BspHI TCATGA 2 cut(s) 768, 1022
BspLI GGNNCC 1 cut(s) 780
BspMI ACCTGC 1 cut(s) 746
BsrDI GCAATG 1 cut(s) 603
BsrI ACTGG 1 cut(s) 982
BssECI CCNNGG 3 cut(s) 391, 471, 774
BssMI GATC 4 cut(s) 196, 273, 357, 993
BssNI GRCGYC 3 cut(s) 396, 484, 969
BssSI CACGAG 1 cut(s) 513
BssT1I CCWWGG 1 cut(s) 774
Bst2BI CACGAG 1 cut(s) 513
Bst2UI CCWGG 3 cut(s) 176, 393, 857
Bst4CI ACNGT 5 cut(s) 120, 355, 440, 691, 892
BstACI GRCGYC 3 cut(s) 396, 484, 969
BstC8I GCNNGC 1 cut(s) 372
BstDEI CTNAG 1 cut(s) 655
BstDSI CCRYGG 1 cut(s) 471
BstF5I GGATG 2 cut(s) 266, 680
BstFNI CGCG 1 cut(s) 489
BstH2I RGCGCY 1 cut(s) 144
BstHHI GCGC 2 cut(s) 143, 410
BstKTI GATC 4 cut(s) 199, 276, 360, 996
BstMAI GTCTC 3 cut(s) 187, 333, 996
BstMBI GATC 4 cut(s) 196, 273, 357, 993
BstMWI GCNNNNNNNGC 4 cut(s) 371, 380, 428, 911
BstNI CCWGG 3 cut(s) 176, 393, 857
BstSCI CCNGG 4 cut(s) 174, 391, 830, 855
BstSFI CTRYAG 1 cut(s) 136
BstUI CGCG 1 cut(s) 489
BstV1I GCAGC 1 cut(s) 230
BsuRI GGCC 1 cut(s) 459
BtgI CCRYGG 1 cut(s) 471
BtgZI GCGATG 2 cut(s) 279, 504
BtsCI GGATG 2 cut(s) 266, 680
BtsI GCAGTG 2 cut(s) 381, 640
BtsIMutI CAGTG 2 cut(s) 381, 640
BveI ACCTGC 1 cut(s) 746
Cac8I GCNNGC 1 cut(s) 372
CciI TCATGA 2 cut(s) 768, 1022
CfoI GCGC 2 cut(s) 143, 410
Cfr13I GGNCC 2 cut(s) 458, 778
CseI GACGC 5 cut(s) 258, 308, 385, 492, 958
CsiI ACCWGGT 1 cut(s) 855
CspCI CAANNNNNGTGG 2 cut(s) 553, 588
CviAII CATG 5 cut(s) 242, 568, 769, 946, 1023
CviJI RGCY 6 cut(s) 422, 459, 509, 521, 633, 955
CviKI_1 RGCY 6 cut(s) 422, 459, 509, 521, 633, 955
DdeI CTNAG 1 cut(s) 655
DpnI GATC 4 cut(s) 198, 275, 359, 995
DpnII GATC 4 cut(s) 196, 273, 357, 993
DrdI GACNNNNNNGTC 1 cut(s) 443
DseDI GACNNNNNNGTC 1 cut(s) 443
Eco130I CCWWGG 1 cut(s) 774
Eco47I GGWCC 1 cut(s) 778
Eco47III AGCGCT 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 458
EcoRII CCWGG 3 cut(s) 174, 391, 855
EcoT14I CCWWGG 1 cut(s) 774
ErhI CCWWGG 1 cut(s) 774
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 5 cut(s) 245, 571, 772, 949, 1026
FaqI GGGAC 3 cut(s) 129, 311, 495
FatI CATG 5 cut(s) 241, 567, 768, 945, 1022
FbaI TGATCA 1 cut(s) 357
FblI GTMKAC 3 cut(s) 693, 753, 887
Fnu4HI GCNGC 3 cut(s) 219, 429, 487
FokI GGATG 2 cut(s) 273, 667
Fsp4HI GCNGC 3 cut(s) 219, 429, 487
FspBI CTAG 1 cut(s) 144
GlaI GCGC 2 cut(s) 142, 409
GluI GCNGC 3 cut(s) 219, 429, 487
GsaI CCCAGC 1 cut(s) 525
HaeII RGCGCY 1 cut(s) 144
HaeIII GGCC 1 cut(s) 459
HapII CCGG 2 cut(s) 615, 831
HgaI GACGC 5 cut(s) 258, 308, 385, 492, 958
HhaI GCGC 2 cut(s) 143, 410
Hin1I GRCGYC 3 cut(s) 396, 484, 969
Hin1II CATG 5 cut(s) 245, 571, 772, 949, 1026
Hin6I GCGC 2 cut(s) 141, 408
HinP1I GCGC 2 cut(s) 141, 408
HincII GTYRAC 1 cut(s) 694
HindII GTYRAC 1 cut(s) 694
HindIII AAGCTT 1 cut(s) 507
HinfI GANTC 6 cut(s) 107, 161, 223, 495, 706, 872
HpaII CCGG 2 cut(s) 615, 831
HphI GGTGA 2 cut(s) 553, 931
Hpy166II GTNNAC 4 cut(s) 172, 694, 754, 888
Hpy188I TCNGA 6 cut(s) 112, 189, 658, 853, 871, 959
Hpy188III TCNNGA 7 cut(s) 502, 615, 710, 769, 973, 997, 1023
Hpy8I GTNNAC 4 cut(s) 172, 694, 754, 888
Hpy99I CGWCG 2 cut(s) 274, 401
HpyAV CCTTC 6 cut(s) 97, 471, 708, 802, 954, 1024
HpyCH4III ACNGT 5 cut(s) 120, 355, 440, 691, 892
HpyCH4V TGCA 4 cut(s) 452, 645, 878, 1008
HpyF10VI GCNNNNNNNGC 4 cut(s) 371, 380, 428, 911
HpyF3I CTNAG 1 cut(s) 655
Hsp92I GRCGYC 3 cut(s) 396, 484, 969
Hsp92II CATG 5 cut(s) 245, 571, 772, 949, 1026
HspAI GCGC 2 cut(s) 141, 408
Kpn2I TCCGGA 1 cut(s) 614
Ksp22I TGATCA 1 cut(s) 357
Kzo9I GATC 4 cut(s) 196, 273, 357, 993
LmnI GCTCC 2 cut(s) 617, 929
Lsp1109I GCAGC 1 cut(s) 230
LweI GCATC 3 cut(s) 251, 256, 887
MabI ACCWGGT 1 cut(s) 855
MaeI CTAG 1 cut(s) 144
MaeIII GTNAC 2 cut(s) 434, 937
MalI GATC 4 cut(s) 198, 275, 359, 995
MboI GATC 4 cut(s) 196, 273, 357, 993
MboII GAAGA 2 cut(s) 52, 319
MhlI GDGCHC 1 cut(s) 622
MluCI AATT 4 cut(s) 310, 476, 898, 1018
MlyI GAGTC 3 cut(s) 217, 489, 866
MnlI CCTC 9 cut(s) 51, 56, 106, 250, 449, 674, 694, 905, 942
MroI TCCGGA 1 cut(s) 614
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 3 cut(s) 566, 767, 944
MspI CCGG 2 cut(s) 615, 831
MspR9I CCNGG 4 cut(s) 176, 393, 832, 857
MvaI CCWGG 3 cut(s) 176, 393, 857
MvnI CGCG 1 cut(s) 489
MwoI GCNNNNNNNGC 4 cut(s) 371, 380, 428, 911
NciI CCSGG 1 cut(s) 832
NdeII GATC 4 cut(s) 196, 273, 357, 993
NlaIII CATG 5 cut(s) 245, 571, 772, 949, 1026
NlaIV GGNNCC 1 cut(s) 780
NmuCI GTSAC 2 cut(s) 434, 937
PagI TCATGA 2 cut(s) 768, 1022
PfeI GAWTC 3 cut(s) 107, 161, 706
PkrI GCNGC 3 cut(s) 220, 430, 488
PleI GAGTC 3 cut(s) 217, 489, 866
PpsI GAGTC 3 cut(s) 217, 489, 866
Psp6I CCWGG 3 cut(s) 174, 391, 855
PspFI CCCAGC 1 cut(s) 521
PspGI CCWGG 3 cut(s) 174, 391, 855
PspN4I GGNNCC 1 cut(s) 780
PspPI GGNCC 2 cut(s) 458, 778
RseI CAYNNNNRTG 3 cut(s) 566, 767, 944
SalI GTCGAC 1 cut(s) 692
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 3 cut(s) 219, 429, 487
Sau3AI GATC 4 cut(s) 196, 273, 357, 993
Sau96I GGNCC 2 cut(s) 458, 778
SchI GAGTC 3 cut(s) 217, 489, 866
ScrFI CCNGG 4 cut(s) 176, 393, 832, 857
SduI GDGCHC 1 cut(s) 622
SetI ASST 7 cut(s) 511, 545, 740, 776, 861, 957, 1016
SexAI ACCWGGT 1 cut(s) 855
SfaNI GCATC 3 cut(s) 251, 256, 887
SfcI CTRYAG 1 cut(s) 136
SinI GGWCC 1 cut(s) 778
SmiMI CAYNNNNRTG 3 cut(s) 566, 767, 944
Sse9I AATT 4 cut(s) 310, 476, 898, 1018
SsiI CCGC 5 cut(s) 429, 487, 661, 749, 942
SspMI CTAG 1 cut(s) 144
StyD4I CCNGG 4 cut(s) 174, 391, 830, 855
StyI CCWWGG 1 cut(s) 774
TaaI ACNGT 5 cut(s) 120, 355, 440, 691, 892
TaqI TCGA 3 cut(s) 272, 503, 693
TaqII GACCGA 1 cut(s) 873
TasI AATT 4 cut(s) 310, 476, 898, 1018
TauI GCSGC 2 cut(s) 431, 489
TfiI GAWTC 3 cut(s) 107, 161, 706
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 381, 647
TseFI GTSAC 2 cut(s) 434, 937
TseI GCWGC 1 cut(s) 218
Tsp45I GTSAC 2 cut(s) 434, 937
TspDTI ATGAA 4 cut(s) 62, 318, 453, 1011
TspGWI ACGGA 1 cut(s) 942
TspRI CASTG 2 cut(s) 381, 647
VpaK11BI GGWCC 1 cut(s) 778
XapI RAATTY 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 727
XmiI GTMKAC 3 cut(s) 693, 753, 887
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.