Rh2DG691600

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0003993
Physical Location & Seq
Forward (+)
90827151 .. 90828646
1496 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG691600.1

Sequence Viewer

Length: 990 bp
ATGGAGGTGTGGAGAGGGTTACTGTTAATAGTGGTTACGGTGATGATGATGATTGATATGCAGGGAAGAGGATCAGAAGCACAATTAGTTGAAAATTTTTACAGCTCTAGTTGTCCAAACGTTGAATCCATAGTGAAGCAGGCAGTTTCTACAAAATTCAGCCAAACCTTCACGACAATTCCGGCTACTCTACGACTCTTTTTTCATGACTGCTTTGTGGAGGGATGCGATGCCTCGGTCATGATATCATCACCAAATGGGGATGCAGAGAAGGACTCGTCGGATAATCTTTCATTGGCCGGAGATGGGTTTGACACCGTCATCAAGGCTAAGCAAGCCGTCGAAGCGCAATGCCCTGCCGTCGTTTCTTGTGCTGACATTCTGGCTCTTGCTACCCGCGACGTTGTAGTTCTTGGTGGAGGTCCGGACTTCAACGTAGAATTGGGACGTCGAGATGGACTAGTCTCCAAAGCCTCACGGGTCGCCGGAAACTTGCCGGAACCATCATTTGATCTTAAACAACTCAACACTATGTTTGCCAAACACAACCTAACCCAAACCGACGTCATTGCATTATCCGGAGCACATACTCTAGGGTTTTCACACTGCAACCGCTTCGCCAACCGCTTGTACTCATTCTCGTCATCCTCCGTCGTTGACCCGTCGTTGGATCCCGACTACGCCAAGCAGCTGATGTCAGCCTGCCCTCAGGATGTGGACCCCAGCATAGCCATCGACATGGACCCTCAAACCCCACGAACGTTTGACAACGCGTATTACCAGAACTTGGTTGCCGGAAAGGGCTTGTTTACCTCGGACGAGGTTCTTTTCTCGGACTCGGCGTCTCAGTCTACTGTCGTGGACTTTGCTAACAGCCCCGGTGAGTTTAGTGGAGCCTTCATCACTGCCATGAGGAAGCTCGGCAGGGTCGACGTTAAGACTGGTGGTCAAGGGGAGATTAGGACGGATTGCACCGCCTTCAATTCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

329

Amino Acids

35.34

Weight (kDa)

4.65

Isoelectric Point (pI)

37.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 292 1.2e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 451, 567
AccB7I CCANNNNNTGG 1 cut(s) 787
AccI GTMKAC 2 cut(s) 851, 930
AccII CGCG 2 cut(s) 399, 773
AccIII TCCGGA 2 cut(s) 424, 578
AciI CCGC 4 cut(s) 397, 613, 625, 975
AclI AACGTT 2 cut(s) 120, 761
AclWI GGATC 3 cut(s) 79, 665, 678
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 2 cut(s) 94, 155
AcyI GRCGYC 3 cut(s) 448, 564, 842
AfaI GTAC 1 cut(s) 632
AfiI CCNNNNNNNGG 3 cut(s) 306, 667, 787
AflIII ACRYGT 1 cut(s) 771
AgsI TTSAA 4 cut(s) 92, 125, 433, 982
AhdI GACNNNNNGTC 2 cut(s) 841, 945
AhlI ACTAGT 1 cut(s) 460
AluBI AGCT 3 cut(s) 105, 691, 919
AluI AGCT 3 cut(s) 105, 691, 919
Alw21I GWGCWC 1 cut(s) 586
Alw26I GTCTC 2 cut(s) 469, 849
AlwI GGATC 3 cut(s) 79, 665, 678
Aor13HI TCCGGA 2 cut(s) 424, 578
AoxI GGCC 1 cut(s) 297
ApeKI GCWGC 1 cut(s) 688
ApoI RAATTY 2 cut(s) 94, 155
AspLEI GCGC 1 cut(s) 349
AspS9I GGNCC 3 cut(s) 422, 718, 742
AsuC2I CCSGG 1 cut(s) 879
AsuHPI GGTGA 3 cut(s) 52, 243, 893
AvaII GGWCC 3 cut(s) 422, 718, 742
AxyI CCTNAGG 1 cut(s) 708
BamHI GGATCC 1 cut(s) 670
Bbv12I GWGCWC 1 cut(s) 586
BbvI GCAGC 1 cut(s) 700
BccI CCATC 4 cut(s) 299, 449, 511, 740
BceAI ACGGC 2 cut(s) 323, 344
BcgI CGANNNNNNTGC 6 cut(s) 551, 585, 598, 632, 715, 749
BcnI CCSGG 1 cut(s) 879
BcoDI GTCTC 2 cut(s) 469, 849
BcuI ACTAGT 1 cut(s) 460
BfaI CTAG 3 cut(s) 108, 461, 593
BisI GCNGC 1 cut(s) 689
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 1 cut(s) 690
Bme1390I CCNGG 1 cut(s) 879
Bme18I GGWCC 3 cut(s) 422, 718, 742
BmeRI GACNNNNNGTC 2 cut(s) 841, 945
BmgT120I GGNCC 3 cut(s) 422, 718, 742
BmiI GGNNCC 5 cut(s) 501, 672, 720, 744, 895
BmrFI CCNGG 1 cut(s) 879
BmsI GCATC 3 cut(s) 215, 220, 253
BplI GAGNNNNNCTC 2 cut(s) 260, 292
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 879
BsaHI GRCGYC 3 cut(s) 448, 564, 842
BsaJI CCNNGG 3 cut(s) 234, 813, 877
BsaWI WCCGGW 2 cut(s) 424, 578
Bsc4I CCNNNNNNNGG 3 cut(s) 306, 667, 787
Bse1I ACTGG 1 cut(s) 946
Bse21I CCTNAGG 1 cut(s) 708
Bse3DI GCAATG 2 cut(s) 356, 567
BseAI TCCGGA 2 cut(s) 424, 578
BseDI CCNNGG 3 cut(s) 234, 813, 877
BseGI GGATG 4 cut(s) 230, 268, 644, 718
BseLI CCNNNNNNNGG 3 cut(s) 306, 667, 787
BseMI GCAATG 2 cut(s) 356, 567
BseMII CTCAG 2 cut(s) 722, 860
BseNI ACTGG 1 cut(s) 946
BseXI GCAGC 1 cut(s) 700
BseYI CCCAGC 1 cut(s) 722
Bsh1236I CGCG 2 cut(s) 399, 773
BshFI GGCC 1 cut(s) 299
BsiHKAI GWGCWC 1 cut(s) 586
BsiSI CCGG 8 cut(s) 182, 300, 425, 486, 497, 579, 795, 879
BslFI GGGAC 1 cut(s) 459
BslI CCNNNNNNNGG 3 cut(s) 306, 667, 787
BsmAI GTCTC 2 cut(s) 469, 849
BsmBI CGTCTC 1 cut(s) 849
BsmFI GGGAC 1 cut(s) 459
BsnI GGCC 1 cut(s) 299
Bsp1286I GDGCHC 1 cut(s) 586
Bsp13I TCCGGA 2 cut(s) 424, 578
Bsp143I GATC 3 cut(s) 71, 511, 670
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 4 cut(s) 397, 613, 625, 975
BspANI GGCC 1 cut(s) 299
BspCNI CTCAG 2 cut(s) 721, 859
BspEI TCCGGA 2 cut(s) 424, 578
BspFNI CGCG 2 cut(s) 399, 773
BspHI TCATGA 3 cut(s) 205, 240, 986
BspLI GGNNCC 5 cut(s) 501, 672, 720, 744, 895
BspPI GGATC 3 cut(s) 79, 665, 678
BsrDI GCAATG 2 cut(s) 356, 567
BsrI ACTGG 1 cut(s) 946
BssECI CCNNGG 3 cut(s) 234, 813, 877
BssMI GATC 3 cut(s) 71, 511, 670
BssNI GRCGYC 3 cut(s) 448, 564, 842
Bst4CI ACNGT 4 cut(s) 24, 40, 319, 856
Bst6I CTCTTC 1 cut(s) 61
BstACI GRCGYC 3 cut(s) 448, 564, 842
BstC8I GCNNGC 3 cut(s) 141, 336, 703
BstDEI CTNAG 3 cut(s) 330, 708, 846
BstF5I GGATG 4 cut(s) 230, 268, 644, 718
BstFNI CGCG 2 cut(s) 399, 773
BstHHI GCGC 1 cut(s) 349
BstKTI GATC 3 cut(s) 74, 514, 673
BstMAI GTCTC 2 cut(s) 469, 849
BstMBI GATC 3 cut(s) 71, 511, 670
BstMWI GCNNNNNNNGC 2 cut(s) 335, 344
BstSCI CCNGG 1 cut(s) 877
BstUI CGCG 2 cut(s) 399, 773
BstV1I GCAGC 1 cut(s) 700
BstX2I RGATCY 1 cut(s) 670
BstXI CCANNNNNNTGG 1 cut(s) 739
BstYI RGATCY 1 cut(s) 670
Bsu36I CCTNAGG 1 cut(s) 708
BsuRI GGCC 1 cut(s) 299
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 4 cut(s) 230, 268, 644, 718
BtsI GCAGTG 2 cut(s) 604, 903
BtsIMutI CAGTG 2 cut(s) 604, 903
Cac8I GCNNGC 3 cut(s) 141, 336, 703
CciI TCATGA 3 cut(s) 205, 240, 986
CfoI GCGC 1 cut(s) 349
Cfr13I GGNCC 3 cut(s) 422, 718, 742
CseI GACGC 1 cut(s) 831
Csp6I GTAC 1 cut(s) 631
CviAII CATG 5 cut(s) 206, 241, 739, 910, 987
CviQI GTAC 1 cut(s) 631
DdeI CTNAG 3 cut(s) 330, 708, 846
DpnI GATC 3 cut(s) 73, 513, 672
DpnII GATC 3 cut(s) 71, 511, 670
DriI GACNNNNNGTC 2 cut(s) 841, 945
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 61
Eam1105I GACNNNNNGTC 2 cut(s) 841, 945
EarI CTCTTC 1 cut(s) 61
Eco32I GATATC 1 cut(s) 246
Eco47I GGWCC 3 cut(s) 422, 718, 742
Eco81I CCTNAGG 1 cut(s) 708
EcoRV GATATC 1 cut(s) 246
Esp3I CGTCTC 1 cut(s) 849
FaeI CATG 5 cut(s) 209, 244, 742, 913, 990
FaqI GGGAC 1 cut(s) 459
FatI CATG 5 cut(s) 205, 240, 738, 909, 986
FauI CCCGC 1 cut(s) 404
FblI GTMKAC 2 cut(s) 851, 930
Fnu4HI GCNGC 1 cut(s) 689
FokI GGATG 4 cut(s) 237, 275, 631, 725
Fsp4HI GCNGC 1 cut(s) 689
FspBI CTAG 3 cut(s) 108, 461, 593
GlaI GCGC 1 cut(s) 348
GluI GCNGC 1 cut(s) 689
GsaI CCCAGC 1 cut(s) 726
HaeIII GGCC 1 cut(s) 299
HapII CCGG 8 cut(s) 182, 300, 425, 486, 497, 579, 795, 879
HgaI GACGC 1 cut(s) 831
HhaI GCGC 1 cut(s) 349
Hin1I GRCGYC 3 cut(s) 448, 564, 842
Hin1II CATG 5 cut(s) 209, 244, 742, 913, 990
Hin6I GCGC 1 cut(s) 347
HinP1I GCGC 1 cut(s) 347
HincII GTYRAC 2 cut(s) 658, 931
HindII GTYRAC 2 cut(s) 658, 931
HinfI GANTC 4 cut(s) 125, 195, 275, 836
HpaII CCGG 8 cut(s) 182, 300, 425, 486, 497, 579, 795, 879
HphI GGTGA 3 cut(s) 52, 243, 893
Hpy166II GTNNAC 6 cut(s) 658, 718, 810, 852, 862, 931
Hpy188I TCNGA 4 cut(s) 76, 283, 817, 835
Hpy188III TCNNGA 9 cut(s) 172, 206, 241, 425, 452, 579, 674, 710, 987
Hpy8I GTNNAC 6 cut(s) 658, 718, 810, 852, 862, 931
Hpy99I CGWCG 9 cut(s) 283, 344, 365, 404, 453, 566, 656, 667, 935
HpyAV CCTTC 4 cut(s) 178, 265, 907, 988
HpyCH4III ACNGT 4 cut(s) 24, 40, 319, 856
HpyCH4IV ACGT 7 cut(s) 120, 402, 435, 448, 564, 761, 933
HpyCH4V TGCA 5 cut(s) 61, 266, 572, 609, 972
HpyF10VI GCNNNNNNNGC 2 cut(s) 335, 344
HpyF3I CTNAG 3 cut(s) 330, 708, 846
HpySE526I ACGT 7 cut(s) 120, 402, 435, 448, 564, 761, 933
Hsp92I GRCGYC 3 cut(s) 448, 564, 842
Hsp92II CATG 5 cut(s) 209, 244, 742, 913, 990
HspAI GCGC 1 cut(s) 347
Kpn2I TCCGGA 2 cut(s) 424, 578
Kzo9I GATC 3 cut(s) 71, 511, 670
LmnI GCTCC 2 cut(s) 581, 893
Lsp1109I GCAGC 1 cut(s) 700
LweI GCATC 3 cut(s) 215, 220, 253
MaeI CTAG 3 cut(s) 108, 461, 593
MaeII ACGT 7 cut(s) 120, 402, 435, 448, 564, 761, 933
MaeIII GTNAC 2 cut(s) 18, 34
MalI GATC 3 cut(s) 73, 513, 672
MboI GATC 3 cut(s) 71, 511, 670
MboII GAAGA 1 cut(s) 78
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 586
MluCI AATT 6 cut(s) 83, 94, 155, 177, 440, 982
MluI ACGCGT 1 cut(s) 771
MlyI GAGTC 3 cut(s) 189, 269, 830
MmeI TCCRAC 2 cut(s) 261, 648
MroI TCCGGA 2 cut(s) 424, 578
MseI TTAA 3 cut(s) 26, 516, 936
MslI CAYNNNNRTG 2 cut(s) 737, 908
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 8 cut(s) 182, 300, 425, 486, 497, 579, 795, 879
MspR9I CCNGG 1 cut(s) 879
MvnI CGCG 2 cut(s) 399, 773
MwoI GCNNNNNNNGC 2 cut(s) 335, 344
NciI CCSGG 1 cut(s) 879
NdeII GATC 3 cut(s) 71, 511, 670
NlaIII CATG 5 cut(s) 209, 244, 742, 913, 990
NlaIV GGNNCC 5 cut(s) 501, 672, 720, 744, 895
NmeAIII GCCGAG 2 cut(s) 818, 900
PagI TCATGA 3 cut(s) 205, 240, 986
PcsI WCGNNNNNNNCGW 2 cut(s) 839, 927
PfeI GAWTC 1 cut(s) 125
PflFI GACNNNGTC 1 cut(s) 317
PflMI CCANNNNNTGG 1 cut(s) 787
PkrI GCNGC 1 cut(s) 690
PleI GAGTC 3 cut(s) 189, 269, 830
PpsI GAGTC 3 cut(s) 189, 269, 830
Psp1406I AACGTT 2 cut(s) 120, 761
PspFI CCCAGC 1 cut(s) 722
PspN4I GGNNCC 5 cut(s) 501, 672, 720, 744, 895
PspPI GGNCC 3 cut(s) 422, 718, 742
PsuI RGATCY 1 cut(s) 670
PsyI GACNNNGTC 1 cut(s) 317
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 1 cut(s) 632
RsaNI GTAC 1 cut(s) 631
RseI CAYNNNNRTG 2 cut(s) 737, 908
SalI GTCGAC 1 cut(s) 929
SaqAI TTAA 3 cut(s) 26, 516, 936
SatI GCNGC 1 cut(s) 689
Sau3AI GATC 3 cut(s) 71, 511, 670
Sau96I GGNCC 3 cut(s) 422, 718, 742
SchI GAGTC 3 cut(s) 189, 269, 830
ScrFI CCNGG 1 cut(s) 879
SduI GDGCHC 1 cut(s) 586
SfaNI GCATC 3 cut(s) 215, 220, 253
SinI GGWCC 3 cut(s) 422, 718, 742
SmiMI CAYNNNNRTG 2 cut(s) 737, 908
SpeI ACTAGT 1 cut(s) 460
Sse9I AATT 6 cut(s) 83, 94, 155, 177, 440, 982
SsiI CCGC 4 cut(s) 397, 613, 625, 975
SspMI CTAG 3 cut(s) 108, 461, 593
StyD4I CCNGG 1 cut(s) 877
TaaI ACNGT 4 cut(s) 24, 40, 319, 856
TaiI ACGT 7 cut(s) 123, 405, 438, 451, 567, 764, 936
TaqI TCGA 4 cut(s) 342, 451, 735, 930
TaqII GACCGA 1 cut(s) 226
TasI AATT 6 cut(s) 83, 94, 155, 177, 440, 982
TatI WGTACW 1 cut(s) 630
TfiI GAWTC 1 cut(s) 125
Tru1I TTAA 3 cut(s) 26, 516, 936
Tru9I TTAA 3 cut(s) 26, 516, 936
TscAI CASTG 2 cut(s) 611, 910
TseI GCWGC 1 cut(s) 688
TspDTI ATGAA 4 cut(s) 194, 282, 889, 975
TspGWI ACGGA 2 cut(s) 640, 980
TspRI CASTG 2 cut(s) 611, 910
Tth111I GACNNNGTC 1 cut(s) 317
Van91I CCANNNNNTGG 1 cut(s) 787
VpaK11BI GGWCC 3 cut(s) 422, 718, 742
XapI RAATTY 2 cut(s) 94, 155
XmiI GTMKAC 2 cut(s) 851, 930
XspI CTAG 3 cut(s) 108, 461, 593
ZraI GACGTC 2 cut(s) 449, 565
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.