Rh2BG677900

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0003993
Physical Location & Seq
Forward (+)
88838477 .. 88843491
5015 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG677900.1

Sequence Viewer

Length: 1002 bp
ATGGAGGTATGGAGAGGCTTGTTGGTGATTTCGGGTTTGGTTTTGATGATGATTGATATGCAGGGGAGGGGATCAGAAGCACGTTTAGTAGAAAACTTCTACAGCTCTAGTTGTCCAAATGTTGAATTCATAGTGAAGCAGGCAGTCTCTACGAAACTCAGCCAAAATCCTCCAACAATTCCGGGTACTTTGCGACTGTTTTTCCATGACTGCTTTATTGAGGGATGCGATGCCTCGATAATGATTGCTTCATCAAATGGGGATGCAGAGAAGGATTATTCAGATAATCTTTCTTTGGCCGGAGATGGATTTGACACCGTAGTCAAGGCTAAGCAAGCAGTCGAAGCACAATGCCCTGGCGTCGTCTCTTGTGCCGACATTTTGGCACTTGCTGCCCGAGATGTTGTAGTCCTAGCCGGAGGCCCTGCGTATAATGTAGAATTGGGGCGTCGAGATGGACTGATCTCAAAAGCCTCTCGGGCCCCTGGCAATTTGCCTGAACCATTTTTTAATCTGAAGCAACTCAACACCATGTTTGCCAAACACAACCTTTCCCAAACTGATGTTATTGCACTGTCTGGAGCGCATACACTAGGCTTTTCGCACTGCAGCCGCTTTGCAAGCCGTTTGTACTCATTTTCAAACTCATCTGCCGTTGACCCTTCTTTGGATCCAGGCTATGCCAAGCAGCTGATGTCAACTTGCCCGCGAGATGTGGACACCGGCATACCTGTCAACCTGGACCCAACTCCACAGACATTTGACAATGCTTATTACCAGAACTTGGTTGCAAGGAAGGGCTTGTTGACTTCAGATGAGGTTCTGTTCTCTGACTCTGCTTCTAAGCCTACTGTCATAGATTTTGCCAACAACCCTGGTAACTTCAATGGAGCCTTCGTCGCCGCAATGAGGAAGCTTGGCAGGGTCGGTGTGAAGACTGGTAATGAAGGCGAGATAAGGAAAGACTGCGCTGCGTTCAATCATGATCATGGTGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

35.73

Weight (kDa)

5.4

Isoelectric Point (pI)

28.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 291 7.6e-82 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 320
AccB7I CCANNNNNTGG 1 cut(s) 784
AccII CGCG 1 cut(s) 709
AciI CCGC 3 cut(s) 613, 707, 903
AclWI GGATC 3 cut(s) 79, 665, 678
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 125
AcuI CTGAAG 2 cut(s) 536, 795
AcyI GRCGYC 2 cut(s) 360, 448
AfaI GTAC 2 cut(s) 187, 632
AfiI CCNNNNNNNGG 3 cut(s) 667, 784, 909
AgsI TTSAA 4 cut(s) 125, 642, 886, 979
AjnI CCWGG 5 cut(s) 355, 484, 673, 738, 874
AluBI AGCT 4 cut(s) 105, 691, 916, 999
AluI AGCT 4 cut(s) 105, 691, 916, 999
Alw26I GTCTC 2 cut(s) 151, 370
AlwI GGATC 3 cut(s) 79, 665, 678
Ama87I CYCGRG 2 cut(s) 396, 477
AoxI GGCC 3 cut(s) 297, 421, 480
ApaI GGGCCC 1 cut(s) 484
ApeKI GCWGC 4 cut(s) 392, 609, 688, 971
ApoI RAATTY 1 cut(s) 125
AspLEI GCGC 2 cut(s) 586, 971
AspS9I GGNCC 4 cut(s) 422, 480, 481, 742
AsuC2I CCSGG 1 cut(s) 183
AsuHPI GGTGA 1 cut(s) 37
AvaI CYCGRG 2 cut(s) 396, 477
AvaII GGWCC 1 cut(s) 742
BaeGI GKGCMC 1 cut(s) 484
BamHI GGATCC 1 cut(s) 670
BanII GRGCYC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 941
BbvI GCAGC 4 cut(s) 379, 621, 700, 958
BccI CCATC 2 cut(s) 299, 449
BceAI ACGGC 2 cut(s) 609, 638
BciT130I CCWGG 5 cut(s) 357, 486, 675, 740, 876
BclI TGATCA 1 cut(s) 985
BcnI CCSGG 1 cut(s) 183
BcoDI GTCTC 2 cut(s) 151, 370
BfaI CTAG 4 cut(s) 108, 413, 593, 1000
BfmI CTRYAG 2 cut(s) 100, 607
BglI GCCNNNNNGGC 1 cut(s) 479
BisI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 6 cut(s) 394, 611, 614, 690, 904, 973
Bme1390I CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
Bme18I GGWCC 1 cut(s) 742
BmeT110I CYCGRG 2 cut(s) 396, 477
BmgT120I GGNCC 4 cut(s) 422, 480, 481, 742
BmiI GGNNCC 5 cut(s) 482, 483, 672, 744, 892
BmrFI CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
BmsI GCATC 3 cut(s) 215, 220, 253
BpiI GAAGAC 1 cut(s) 941
BpmI CTGGAG 1 cut(s) 600
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 183
BsaHI GRCGYC 2 cut(s) 360, 448
BsaJI CCNNGG 3 cut(s) 355, 484, 874
BsaXI ACNNNNNCTCC 2 cut(s) 882, 912
Bsc4I CCNNNNNNNGG 3 cut(s) 667, 784, 909
Bse118I RCCGGY 1 cut(s) 722
Bse1I ACTGG 1 cut(s) 943
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 5 cut(s) 357, 486, 675, 740, 876
BseDI CCNNGG 3 cut(s) 355, 484, 874
BseGI GGATG 2 cut(s) 230, 268
BseLI CCNNNNNNNGG 3 cut(s) 667, 784, 909
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 1 cut(s) 172
BseNI ACTGG 1 cut(s) 943
BseSI GKGCMC 1 cut(s) 484
BseXI GCAGC 4 cut(s) 379, 621, 700, 958
Bsh1236I CGCG 1 cut(s) 709
BshFI GGCC 3 cut(s) 299, 423, 482
BsiHKCI CYCGRG 2 cut(s) 396, 477
BsiSI CCGG 4 cut(s) 182, 300, 417, 723
BslI CCNNNNNNNGG 3 cut(s) 667, 784, 909
BsmAI GTCTC 2 cut(s) 151, 370
BsmBI CGTCTC 1 cut(s) 370
BsnI GGCC 3 cut(s) 299, 423, 482
BsoBI CYCGRG 2 cut(s) 396, 477
Bsp120I GGGCCC 1 cut(s) 480
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 4 cut(s) 71, 462, 670, 985
Bsp1720I GCTNAGC 1 cut(s) 330
BspACI CCGC 3 cut(s) 613, 707, 903
BspANI GGCC 3 cut(s) 299, 423, 482
BspCNI CTCAG 1 cut(s) 171
BspFNI CGCG 1 cut(s) 709
BspHI TCATGA 1 cut(s) 982
BspLI GGNNCC 5 cut(s) 482, 483, 672, 744, 892
BspMAI CTGCAG 1 cut(s) 611
BspPI GGATC 3 cut(s) 79, 665, 678
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 722
BsrI ACTGG 1 cut(s) 943
BssAI RCCGGY 1 cut(s) 722
BssECI CCNNGG 3 cut(s) 355, 484, 874
BssMI GATC 4 cut(s) 71, 462, 670, 985
BssNI GRCGYC 2 cut(s) 360, 448
Bst2UI CCWGG 5 cut(s) 357, 486, 675, 740, 876
Bst4CI ACNGT 4 cut(s) 198, 319, 576, 853
BstACI GRCGYC 2 cut(s) 360, 448
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 4 cut(s) 141, 336, 622, 707
BstDEI CTNAG 3 cut(s) 158, 330, 843
BstF5I GGATG 2 cut(s) 230, 268
BstFNI CGCG 1 cut(s) 709
BstHHI GCGC 2 cut(s) 586, 971
BstKTI GATC 4 cut(s) 74, 465, 673, 988
BstMAI GTCTC 2 cut(s) 151, 370
BstMBI GATC 4 cut(s) 71, 462, 670, 985
BstMWI GCNNNNNNNGC 6 cut(s) 335, 344, 392, 479, 621, 899
BstNI CCWGG 5 cut(s) 357, 486, 675, 740, 876
BstSCI CCNGG 6 cut(s) 181, 355, 484, 673, 738, 874
BstSFI CTRYAG 2 cut(s) 100, 607
BstSLI GKGCMC 1 cut(s) 484
BstUI CGCG 1 cut(s) 709
BstV1I GCAGC 4 cut(s) 379, 621, 700, 958
BstV2I GAAGAC 1 cut(s) 941
BstX2I RGATCY 1 cut(s) 670
BstYI RGATCY 1 cut(s) 670
BsuRI GGCC 3 cut(s) 299, 423, 482
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 230, 268
BtsI GCAGTG 1 cut(s) 604
BtsIMutI CAGTG 2 cut(s) 572, 604
Cac8I GCNNGC 4 cut(s) 141, 336, 622, 707
CciI TCATGA 1 cut(s) 982
CfoI GCGC 2 cut(s) 586, 971
Cfr10I RCCGGY 1 cut(s) 722
Cfr13I GGNCC 4 cut(s) 422, 480, 481, 742
CseI GACGC 2 cut(s) 349, 437
Csp6I GTAC 2 cut(s) 186, 631
CviAII CATG 4 cut(s) 206, 532, 983, 989
CviQI GTAC 2 cut(s) 186, 631
DdeI CTNAG 3 cut(s) 158, 330, 843
DpnI GATC 4 cut(s) 73, 464, 672, 987
DpnII GATC 4 cut(s) 71, 462, 670, 985
DrdI GACNNNNNNGTC 1 cut(s) 320
DseDI GACNNNNNNGTC 1 cut(s) 320
EaeI YGGCCR 1 cut(s) 297
Eco24I GRGCYC 1 cut(s) 484
Eco47I GGWCC 1 cut(s) 742
Eco57I CTGAAG 2 cut(s) 536, 795
Eco88I CYCGRG 2 cut(s) 396, 477
EcoO109I RGGNCCY 2 cut(s) 422, 481
EcoRI GAATTC 1 cut(s) 125
EcoRII CCWGG 5 cut(s) 355, 484, 673, 738, 874
EcoT38I GRGCYC 1 cut(s) 484
Esp3I CGTCTC 1 cut(s) 370
FaeI CATG 4 cut(s) 209, 535, 986, 992
FatI CATG 4 cut(s) 205, 531, 982, 988
FauI CCCGC 1 cut(s) 714
FbaI TGATCA 1 cut(s) 985
Fnu4HI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
FokI GGATG 2 cut(s) 237, 275
FriOI GRGCYC 1 cut(s) 484
Fsp4HI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
FspBI CTAG 4 cut(s) 108, 413, 593, 1000
GlaI GCGC 2 cut(s) 585, 970
GluI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
GsuI CTGGAG 1 cut(s) 600
HaeIII GGCC 3 cut(s) 299, 423, 482
HapII CCGG 4 cut(s) 182, 300, 417, 723
HgaI GACGC 2 cut(s) 349, 437
HhaI GCGC 2 cut(s) 586, 971
Hin1I GRCGYC 2 cut(s) 360, 448
Hin1II CATG 4 cut(s) 209, 535, 986, 992
Hin6I GCGC 2 cut(s) 584, 969
HinP1I GCGC 2 cut(s) 584, 969
HincII GTYRAC 4 cut(s) 658, 699, 736, 807
HindII GTYRAC 4 cut(s) 658, 699, 736, 807
HindIII AAGCTT 1 cut(s) 914
HinfI GANTC 1 cut(s) 833
HpaII CCGG 4 cut(s) 182, 300, 417, 723
HphI GGTGA 1 cut(s) 37
Hpy166II GTNNAC 5 cut(s) 658, 699, 718, 736, 807
Hpy188I TCNGA 5 cut(s) 76, 283, 516, 814, 832
Hpy188III TCNNGA 3 cut(s) 452, 579, 983
Hpy8I GTNNAC 5 cut(s) 658, 699, 718, 736, 807
Hpy99I CGWCG 3 cut(s) 365, 453, 902
HpyAV CCTTC 5 cut(s) 265, 672, 790, 904, 941
HpyCH4III ACNGT 4 cut(s) 198, 319, 576, 853
HpyCH4IV ACGT 1 cut(s) 82
HpyCH4V TGCA 6 cut(s) 61, 266, 572, 609, 620, 791
HpyF10VI GCNNNNNNNGC 6 cut(s) 335, 344, 392, 479, 621, 899
HpyF3I CTNAG 3 cut(s) 158, 330, 843
HpySE526I ACGT 1 cut(s) 82
Hsp92I GRCGYC 2 cut(s) 360, 448
Hsp92II CATG 4 cut(s) 209, 535, 986, 992
HspAI GCGC 2 cut(s) 584, 969
Ksp22I TGATCA 1 cut(s) 985
Kzo9I GATC 4 cut(s) 71, 462, 670, 985
LmnI GCTCC 2 cut(s) 581, 890
Lsp1109I GCAGC 4 cut(s) 379, 621, 700, 958
LweI GCATC 3 cut(s) 215, 220, 253
MaeI CTAG 4 cut(s) 108, 413, 593, 1000
MaeII ACGT 1 cut(s) 82
MaeIII GTNAC 1 cut(s) 878
MalI GATC 4 cut(s) 73, 464, 672, 987
MboI GATC 4 cut(s) 71, 462, 670, 985
MboII GAAGA 1 cut(s) 946
MflI RGATCY 1 cut(s) 670
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 4 cut(s) 125, 177, 440, 490
MlyI GAGTC 1 cut(s) 827
MmeI TCCRAC 1 cut(s) 197
MnlI CCTC 9 cut(s) 8, 60, 180, 214, 244, 413, 484, 811, 903
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 987
MspA1I CMGCKG 1 cut(s) 691
MspI CCGG 4 cut(s) 182, 300, 417, 723
MspR9I CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
MvaI CCWGG 5 cut(s) 357, 486, 675, 740, 876
MvnI CGCG 1 cut(s) 709
MwoI GCNNNNNNNGC 6 cut(s) 335, 344, 392, 479, 621, 899
NciI CCSGG 1 cut(s) 183
NdeII GATC 4 cut(s) 71, 462, 670, 985
NlaIII CATG 4 cut(s) 209, 535, 986, 992
NlaIV GGNNCC 5 cut(s) 482, 483, 672, 744, 892
PagI TCATGA 1 cut(s) 982
PflMI CCANNNNNTGG 1 cut(s) 784
PkrI GCNGC 6 cut(s) 394, 611, 614, 690, 904, 973
PleI GAGTC 1 cut(s) 827
PpsI GAGTC 1 cut(s) 827
Psp6I CCWGG 5 cut(s) 355, 484, 673, 738, 874
PspGI CCWGG 5 cut(s) 355, 484, 673, 738, 874
PspN4I GGNNCC 5 cut(s) 482, 483, 672, 744, 892
PspOMI GGGCCC 1 cut(s) 480
PspPI GGNCC 4 cut(s) 422, 480, 481, 742
PstI CTGCAG 1 cut(s) 611
PsuI RGATCY 1 cut(s) 670
PvuII CAGCTG 1 cut(s) 691
RsaI GTAC 2 cut(s) 187, 632
RsaNI GTAC 2 cut(s) 186, 631
RseI CAYNNNNRTG 1 cut(s) 987
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 6 cut(s) 393, 610, 613, 689, 903, 972
Sau3AI GATC 4 cut(s) 71, 462, 670, 985
Sau96I GGNCC 4 cut(s) 422, 480, 481, 742
SchI GAGTC 1 cut(s) 827
ScrFI CCNGG 6 cut(s) 183, 357, 486, 675, 740, 876
SduI GDGCHC 1 cut(s) 484
SfaNI GCATC 3 cut(s) 215, 220, 253
SfcI CTRYAG 2 cut(s) 100, 607
SinI GGWCC 1 cut(s) 742
SmiMI CAYNNNNRTG 1 cut(s) 987
Sse9I AATT 4 cut(s) 125, 177, 440, 490
SsiI CCGC 3 cut(s) 613, 707, 903
SspMI CTAG 4 cut(s) 108, 413, 593, 1000
StyD4I CCNGG 6 cut(s) 181, 355, 484, 673, 738, 874
TaaI ACNGT 4 cut(s) 198, 319, 576, 853
TaiI ACGT 1 cut(s) 85
TaqI TCGA 3 cut(s) 236, 342, 451
TasI AATT 4 cut(s) 125, 177, 440, 490
TatI WGTACW 1 cut(s) 630
TauI GCSGC 2 cut(s) 615, 905
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TscAI CASTG 2 cut(s) 579, 611
TseI GCWGC 4 cut(s) 392, 609, 688, 971
TspDTI ATGAA 3 cut(s) 118, 240, 960
TspRI CASTG 2 cut(s) 579, 611
Van91I CCANNNNNTGG 1 cut(s) 784
VpaK11BI GGWCC 1 cut(s) 742
XapI RAATTY 1 cut(s) 125
XspI CTAG 4 cut(s) 108, 413, 593, 1000
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.