Rmu_sc0000998.1_g000008

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000998.1
OG0003993
Physical Location & Seq
Reverse (-)
23599 .. 24788
1190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000998.1_g000008.1.cds

Sequence Viewer

Length: 945 bp
atgatgattgatatgcagggaagaggatcagaagcacaattagttgaaaatttttacagctctagttgtccaaacgttgaatccatagtgaagcaggcagtttctacaaaattcagccaaaccttcacgacaattccggctactctacgactcttttttcatgactgctttgtggagggatgcgatgcctcggtcatgatatcatcaccaaatggggatgcagagaaggactcgtcggataatctttcattggctggagatgggtttgacaccgtcatcaaggctaagcaagccgtcgaagcgcaatgccctgccgtcgtttcttgtgctgacattctggctcttgctacccgcgacgttgtagttcttggtggaggtccggacttcaacgtagaattgggacgtcgagatggactagtctccaaagcctcacgggtcgccggaaacttgccggaaccatcatttgatcttaaacaactcaacactatgtttgccaaacacaacctaacccaaaccgacgtcattgcattatccggagcacatactctagggttttcacactgcaaccgcttcgccaaccgcttgtattcattctcgtcatcctccgtcgttgacccgtcgttggatcccgactacgccaagcagctgatgtcagcctgccctcaggatgtggaccccagcatagccatcgacatggaccctcaaaccccacgaacgtttgacaacgcgtattaccagaacttggttgccggaaagggcttgtttacctcggacgaggttcttttctcggactcggcgtctcagtctactgtcgtggactttgctaacagccccggtgagtttagtggagccttcatcactgccatgaggaagctcggcagggtcgacgttaagactggtggtcaaggggagattaggacggattgcaccgccttcaattcatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

314

Amino Acids

33.6

Weight (kDa)

4.62

Isoelectric Point (pI)

40.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 406, 522
AccB7I CCANNNNNTGG 1 cut(s) 742
AccI GTMKAC 2 cut(s) 806, 885
AccII CGCG 2 cut(s) 354, 728
AccIII TCCGGA 2 cut(s) 379, 533
AciI CCGC 4 cut(s) 352, 568, 580, 930
AclI AACGTT 2 cut(s) 75, 716
AclWI GGATC 3 cut(s) 34, 620, 633
AcsI RAATTY 2 cut(s) 49, 110
AcyI GRCGYC 3 cut(s) 403, 519, 797
AfiI CCNNNNNNNGG 2 cut(s) 622, 742
AflIII ACRYGT 1 cut(s) 726
AgsI TTSAA 4 cut(s) 47, 80, 388, 937
AhdI GACNNNNNGTC 2 cut(s) 796, 900
AhlI ACTAGT 1 cut(s) 415
AluBI AGCT 3 cut(s) 60, 646, 874
AluI AGCT 3 cut(s) 60, 646, 874
Alw21I GWGCWC 1 cut(s) 541
Alw26I GTCTC 2 cut(s) 424, 804
AlwI GGATC 3 cut(s) 34, 620, 633
Aor13HI TCCGGA 2 cut(s) 379, 533
ApeKI GCWGC 1 cut(s) 643
ApoI RAATTY 2 cut(s) 49, 110
AspLEI GCGC 1 cut(s) 304
AspS9I GGNCC 3 cut(s) 377, 673, 697
AsuC2I CCSGG 1 cut(s) 834
AsuHPI GGTGA 2 cut(s) 198, 848
AvaII GGWCC 3 cut(s) 377, 673, 697
AxyI CCTNAGG 1 cut(s) 663
BamHI GGATCC 1 cut(s) 625
Bbv12I GWGCWC 1 cut(s) 541
BbvI GCAGC 1 cut(s) 655
BccI CCATC 4 cut(s) 254, 404, 466, 695
BceAI ACGGC 2 cut(s) 278, 299
BcgI CGANNNNNNTGC 6 cut(s) 506, 540, 553, 587, 670, 704
BcnI CCSGG 1 cut(s) 834
BcoDI GTCTC 2 cut(s) 424, 804
BcuI ACTAGT 1 cut(s) 415
BfaI CTAG 3 cut(s) 63, 416, 548
BisI GCNGC 1 cut(s) 644
BlpI GCTNAGC 1 cut(s) 285
BlsI GCNGC 1 cut(s) 645
Bme1390I CCNGG 1 cut(s) 834
Bme18I GGWCC 3 cut(s) 377, 673, 697
BmeRI GACNNNNNGTC 2 cut(s) 796, 900
BmgT120I GGNCC 3 cut(s) 377, 673, 697
BmiI GGNNCC 5 cut(s) 456, 627, 675, 699, 850
BmrFI CCNGG 1 cut(s) 834
BmsI GCATC 3 cut(s) 170, 175, 208
BplI GAGNNNNNCTC 2 cut(s) 215, 247
BpmI CTGGAG 1 cut(s) 276
Bpu1102I GCTNAGC 1 cut(s) 285
BpuMI CCSGG 1 cut(s) 834
BsaHI GRCGYC 3 cut(s) 403, 519, 797
BsaJI CCNNGG 3 cut(s) 189, 768, 832
BsaWI WCCGGW 2 cut(s) 379, 533
Bsc4I CCNNNNNNNGG 2 cut(s) 622, 742
Bse1I ACTGG 1 cut(s) 901
Bse21I CCTNAGG 1 cut(s) 663
Bse3DI GCAATG 2 cut(s) 311, 522
BseAI TCCGGA 2 cut(s) 379, 533
BseDI CCNNGG 3 cut(s) 189, 768, 832
BseGI GGATG 4 cut(s) 185, 223, 599, 673
BseLI CCNNNNNNNGG 2 cut(s) 622, 742
BseMI GCAATG 2 cut(s) 311, 522
BseMII CTCAG 2 cut(s) 677, 815
BseNI ACTGG 1 cut(s) 901
BseXI GCAGC 1 cut(s) 655
BseYI CCCAGC 1 cut(s) 677
Bsh1236I CGCG 2 cut(s) 354, 728
BsiHKAI GWGCWC 1 cut(s) 541
BsiSI CCGG 7 cut(s) 137, 380, 441, 452, 534, 750, 834
BslFI GGGAC 1 cut(s) 414
BslI CCNNNNNNNGG 2 cut(s) 622, 742
BsmAI GTCTC 2 cut(s) 424, 804
BsmBI CGTCTC 1 cut(s) 804
BsmFI GGGAC 1 cut(s) 414
Bsp1286I GDGCHC 1 cut(s) 541
Bsp13I TCCGGA 2 cut(s) 379, 533
Bsp143I GATC 3 cut(s) 26, 466, 625
Bsp1720I GCTNAGC 1 cut(s) 285
BspACI CCGC 4 cut(s) 352, 568, 580, 930
BspCNI CTCAG 2 cut(s) 676, 814
BspEI TCCGGA 2 cut(s) 379, 533
BspFNI CGCG 2 cut(s) 354, 728
BspHI TCATGA 3 cut(s) 160, 195, 941
BspLI GGNNCC 5 cut(s) 456, 627, 675, 699, 850
BspPI GGATC 3 cut(s) 34, 620, 633
BsrDI GCAATG 2 cut(s) 311, 522
BsrI ACTGG 1 cut(s) 901
BssECI CCNNGG 3 cut(s) 189, 768, 832
BssMI GATC 3 cut(s) 26, 466, 625
BssNI GRCGYC 3 cut(s) 403, 519, 797
Bst4CI ACNGT 2 cut(s) 274, 811
Bst6I CTCTTC 1 cut(s) 16
BstACI GRCGYC 3 cut(s) 403, 519, 797
BstC8I GCNNGC 3 cut(s) 96, 291, 658
BstDEI CTNAG 3 cut(s) 285, 663, 801
BstF5I GGATG 4 cut(s) 185, 223, 599, 673
BstFNI CGCG 2 cut(s) 354, 728
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 3 cut(s) 29, 469, 628
BstMAI GTCTC 2 cut(s) 424, 804
BstMBI GATC 3 cut(s) 26, 466, 625
BstMWI GCNNNNNNNGC 2 cut(s) 290, 299
BstSCI CCNGG 1 cut(s) 832
BstUI CGCG 2 cut(s) 354, 728
BstV1I GCAGC 1 cut(s) 655
BstX2I RGATCY 1 cut(s) 625
BstXI CCANNNNNNTGG 1 cut(s) 694
BstYI RGATCY 1 cut(s) 625
Bsu36I CCTNAGG 1 cut(s) 663
BtgZI GCGATG 1 cut(s) 198
BtsCI GGATG 4 cut(s) 185, 223, 599, 673
BtsI GCAGTG 2 cut(s) 559, 858
BtsIMutI CAGTG 2 cut(s) 559, 858
Cac8I GCNNGC 3 cut(s) 96, 291, 658
CciI TCATGA 3 cut(s) 160, 195, 941
CfoI GCGC 1 cut(s) 304
Cfr13I GGNCC 3 cut(s) 377, 673, 697
CseI GACGC 1 cut(s) 786
CviAII CATG 5 cut(s) 161, 196, 694, 865, 942
DdeI CTNAG 3 cut(s) 285, 663, 801
DpnI GATC 3 cut(s) 28, 468, 627
DpnII GATC 3 cut(s) 26, 466, 625
DriI GACNNNNNGTC 2 cut(s) 796, 900
Eam1104I CTCTTC 1 cut(s) 16
Eam1105I GACNNNNNGTC 2 cut(s) 796, 900
EarI CTCTTC 1 cut(s) 16
Eco32I GATATC 1 cut(s) 201
Eco47I GGWCC 3 cut(s) 377, 673, 697
Eco81I CCTNAGG 1 cut(s) 663
EcoRV GATATC 1 cut(s) 201
Esp3I CGTCTC 1 cut(s) 804
FaeI CATG 5 cut(s) 164, 199, 697, 868, 945
FaqI GGGAC 1 cut(s) 414
FatI CATG 5 cut(s) 160, 195, 693, 864, 941
FauI CCCGC 1 cut(s) 359
FblI GTMKAC 2 cut(s) 806, 885
Fnu4HI GCNGC 1 cut(s) 644
FokI GGATG 4 cut(s) 192, 230, 586, 680
Fsp4HI GCNGC 1 cut(s) 644
FspBI CTAG 3 cut(s) 63, 416, 548
GlaI GCGC 1 cut(s) 303
GluI GCNGC 1 cut(s) 644
GsaI CCCAGC 1 cut(s) 681
GsuI CTGGAG 1 cut(s) 276
HapII CCGG 7 cut(s) 137, 380, 441, 452, 534, 750, 834
HgaI GACGC 1 cut(s) 786
HhaI GCGC 1 cut(s) 304
Hin1I GRCGYC 3 cut(s) 403, 519, 797
Hin1II CATG 5 cut(s) 164, 199, 697, 868, 945
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 2 cut(s) 613, 886
HindII GTYRAC 2 cut(s) 613, 886
HinfI GANTC 4 cut(s) 80, 150, 230, 791
HpaII CCGG 7 cut(s) 137, 380, 441, 452, 534, 750, 834
HphI GGTGA 2 cut(s) 198, 848
Hpy166II GTNNAC 6 cut(s) 613, 673, 765, 807, 817, 886
Hpy188I TCNGA 4 cut(s) 31, 238, 772, 790
Hpy188III TCNNGA 9 cut(s) 127, 161, 196, 380, 407, 534, 629, 665, 942
Hpy8I GTNNAC 6 cut(s) 613, 673, 765, 807, 817, 886
Hpy99I CGWCG 9 cut(s) 238, 299, 320, 359, 408, 521, 611, 622, 890
HpyAV CCTTC 4 cut(s) 133, 220, 862, 943
HpyCH4III ACNGT 2 cut(s) 274, 811
HpyCH4IV ACGT 7 cut(s) 75, 357, 390, 403, 519, 716, 888
HpyCH4V TGCA 5 cut(s) 16, 221, 527, 564, 927
HpyF10VI GCNNNNNNNGC 2 cut(s) 290, 299
HpyF3I CTNAG 3 cut(s) 285, 663, 801
HpySE526I ACGT 7 cut(s) 75, 357, 390, 403, 519, 716, 888
Hsp92I GRCGYC 3 cut(s) 403, 519, 797
Hsp92II CATG 5 cut(s) 164, 199, 697, 868, 945
HspAI GCGC 1 cut(s) 302
Kpn2I TCCGGA 2 cut(s) 379, 533
Kzo9I GATC 3 cut(s) 26, 466, 625
LmnI GCTCC 2 cut(s) 536, 848
Lsp1109I GCAGC 1 cut(s) 655
LweI GCATC 3 cut(s) 170, 175, 208
MaeI CTAG 3 cut(s) 63, 416, 548
MaeII ACGT 7 cut(s) 75, 357, 390, 403, 519, 716, 888
MalI GATC 3 cut(s) 28, 468, 627
MboI GATC 3 cut(s) 26, 466, 625
MboII GAAGA 1 cut(s) 33
MflI RGATCY 1 cut(s) 625
MhlI GDGCHC 1 cut(s) 541
MluCI AATT 6 cut(s) 38, 49, 110, 132, 395, 937
MluI ACGCGT 1 cut(s) 726
MlyI GAGTC 3 cut(s) 144, 224, 785
MmeI TCCRAC 2 cut(s) 216, 603
MroI TCCGGA 2 cut(s) 379, 533
MseI TTAA 2 cut(s) 471, 891
MslI CAYNNNNRTG 2 cut(s) 692, 863
MspA1I CMGCKG 1 cut(s) 646
MspI CCGG 7 cut(s) 137, 380, 441, 452, 534, 750, 834
MspR9I CCNGG 1 cut(s) 834
MvnI CGCG 2 cut(s) 354, 728
MwoI GCNNNNNNNGC 2 cut(s) 290, 299
NciI CCSGG 1 cut(s) 834
NdeII GATC 3 cut(s) 26, 466, 625
NlaIII CATG 5 cut(s) 164, 199, 697, 868, 945
NlaIV GGNNCC 5 cut(s) 456, 627, 675, 699, 850
NmeAIII GCCGAG 2 cut(s) 773, 855
PagI TCATGA 3 cut(s) 160, 195, 941
PcsI WCGNNNNNNNCGW 2 cut(s) 794, 882
PfeI GAWTC 1 cut(s) 80
PflFI GACNNNGTC 1 cut(s) 272
PflMI CCANNNNNTGG 1 cut(s) 742
PkrI GCNGC 1 cut(s) 645
PleI GAGTC 3 cut(s) 144, 224, 785
PpsI GAGTC 3 cut(s) 144, 224, 785
Psp1406I AACGTT 2 cut(s) 75, 716
PspFI CCCAGC 1 cut(s) 677
PspN4I GGNNCC 5 cut(s) 456, 627, 675, 699, 850
PspPI GGNCC 3 cut(s) 377, 673, 697
PsuI RGATCY 1 cut(s) 625
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 646
RseI CAYNNNNRTG 2 cut(s) 692, 863
SalI GTCGAC 1 cut(s) 884
SaqAI TTAA 2 cut(s) 471, 891
SatI GCNGC 1 cut(s) 644
Sau3AI GATC 3 cut(s) 26, 466, 625
Sau96I GGNCC 3 cut(s) 377, 673, 697
SchI GAGTC 3 cut(s) 144, 224, 785
ScrFI CCNGG 1 cut(s) 834
SduI GDGCHC 1 cut(s) 541
SfaNI GCATC 3 cut(s) 170, 175, 208
SinI GGWCC 3 cut(s) 377, 673, 697
SmiMI CAYNNNNRTG 2 cut(s) 692, 863
SpeI ACTAGT 1 cut(s) 415
Sse9I AATT 6 cut(s) 38, 49, 110, 132, 395, 937
SsiI CCGC 4 cut(s) 352, 568, 580, 930
SspMI CTAG 3 cut(s) 63, 416, 548
StyD4I CCNGG 1 cut(s) 832
TaaI ACNGT 2 cut(s) 274, 811
TaiI ACGT 7 cut(s) 78, 360, 393, 406, 522, 719, 891
TaqI TCGA 4 cut(s) 297, 406, 690, 885
TaqII GACCGA 1 cut(s) 181
TasI AATT 6 cut(s) 38, 49, 110, 132, 395, 937
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 471, 891
Tru9I TTAA 2 cut(s) 471, 891
TscAI CASTG 2 cut(s) 566, 865
TseI GCWGC 1 cut(s) 643
TspDTI ATGAA 5 cut(s) 149, 237, 579, 844, 930
TspGWI ACGGA 2 cut(s) 595, 935
TspRI CASTG 2 cut(s) 566, 865
Tth111I GACNNNGTC 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 742
VpaK11BI GGWCC 3 cut(s) 377, 673, 697
XapI RAATTY 2 cut(s) 49, 110
XmiI GTMKAC 2 cut(s) 806, 885
XspI CTAG 3 cut(s) 63, 416, 548
ZraI GACGTC 2 cut(s) 404, 520
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.