RLG00000022356

Removal of H(2)O(2), oxidation of toxic reductants, biosynthesis and degradation of lignin, suberization, auxin catabolism, response to environmental stresses such as wounding, pathogen attack and oxidative stress

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0003993
Physical Location & Seq
Forward (+)
82806643 .. 82807152
510 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000022356

Sequence Viewer

Length: 510 bp
ATGCCTGAACCATTTTTTAATCTGAAGCAACTCAACACCATGTTTGCCAAACACAGCCTTTCCCAAACCGATGTTATTGCACTGTCTGGAGCGCATACACTAGGCTTTTCGCACTGCAGCCGCTTTGCAAGCCGTTTGTACTCATTTTCAAACTCATCTGCCGTTGACCCTTCTTTGGATCCAGGCTACGCCAAGCAGCTGATGTCAACTTGCCCGCGAGATGTGGACACCGGCATCCCTGTCAACCTGGACCCAACTCCACAAACATTTGACAATGCTTATTACCAGAACTTGGTTGCAAGGAAAGGCTTGTTGACTTCAGATGAGGTTCTGTTCTCTGACTCTGCTTCTAAGCCTACTGTCATAGATTTTGCCAACAACCCTGGTAACTTCAATGGAGCCTTCATCGCTGCAATGAGGAAGCTTGGAAGGGTCGGTGTGAAGACTGGTAATGAAGGCGAGATTAGGAAAGACTGCGCTGCGTTCAATCATGATCATGGTGATAGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

170

Amino Acids

18.35

Weight (kDa)

6.17

Isoelectric Point (pI)

22.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 2 - 127 1.8e-35 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 292
AccII CGCG 1 cut(s) 217
AciI CCGC 2 cut(s) 121, 215
AclWI GGATC 2 cut(s) 173, 186
AcuI CTGAAG 2 cut(s) 44, 303
AfaI GTAC 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 175, 292
AgsI TTSAA 3 cut(s) 150, 394, 487
AjnI CCWGG 3 cut(s) 181, 246, 382
AluBI AGCT 3 cut(s) 199, 424, 507
AluI AGCT 3 cut(s) 199, 424, 507
AlwI GGATC 2 cut(s) 173, 186
ApeKI GCWGC 4 cut(s) 117, 196, 410, 479
AspLEI GCGC 2 cut(s) 94, 479
AspS9I GGNCC 1 cut(s) 250
AvaII GGWCC 1 cut(s) 250
BamHI GGATCC 1 cut(s) 178
BbsI GAAGAC 1 cut(s) 449
BbvI GCAGC 4 cut(s) 129, 208, 397, 466
BceAI ACGGC 2 cut(s) 117, 146
BcgI CGANNNNNNTGC 2 cut(s) 59, 93
BciT130I CCWGG 3 cut(s) 183, 248, 384
BclI TGATCA 1 cut(s) 493
BfaI CTAG 2 cut(s) 101, 508
BfmI CTRYAG 1 cut(s) 115
BisI GCNGC 5 cut(s) 118, 121, 197, 411, 480
BlsI GCNGC 5 cut(s) 119, 122, 198, 412, 481
Bme1390I CCNGG 3 cut(s) 183, 248, 384
Bme18I GGWCC 1 cut(s) 250
BmgT120I GGNCC 1 cut(s) 250
BmiI GGNNCC 3 cut(s) 180, 252, 400
BmrFI CCNGG 3 cut(s) 183, 248, 384
BmsI GCATC 1 cut(s) 243
BpiI GAAGAC 1 cut(s) 449
BpmI CTGGAG 1 cut(s) 108
BsaJI CCNNGG 1 cut(s) 382
Bsc4I CCNNNNNNNGG 2 cut(s) 175, 292
Bse118I RCCGGY 1 cut(s) 230
Bse1I ACTGG 1 cut(s) 451
Bse3DI GCAATG 1 cut(s) 420
BseBI CCWGG 3 cut(s) 183, 248, 384
BseDI CCNNGG 1 cut(s) 382
BseGI GGATG 1 cut(s) 234
BseLI CCNNNNNNNGG 2 cut(s) 175, 292
BseMI GCAATG 1 cut(s) 420
BseNI ACTGG 1 cut(s) 451
BseXI GCAGC 4 cut(s) 129, 208, 397, 466
Bsh1236I CGCG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 231
BslI CCNNNNNNNGG 2 cut(s) 175, 292
Bsp143I GATC 2 cut(s) 178, 493
BspACI CCGC 2 cut(s) 121, 215
BspFNI CGCG 1 cut(s) 217
BspHI TCATGA 1 cut(s) 490
BspLI GGNNCC 3 cut(s) 180, 252, 400
BspMAI CTGCAG 1 cut(s) 119
BspPI GGATC 2 cut(s) 173, 186
BsrDI GCAATG 1 cut(s) 420
BsrFI RCCGGY 1 cut(s) 230
BsrI ACTGG 1 cut(s) 451
BssAI RCCGGY 1 cut(s) 230
BssECI CCNNGG 1 cut(s) 382
BssMI GATC 2 cut(s) 178, 493
Bst2UI CCWGG 3 cut(s) 183, 248, 384
Bst4CI ACNGT 2 cut(s) 84, 361
BstC8I GCNNGC 2 cut(s) 130, 215
BstDEI CTNAG 1 cut(s) 351
BstF5I GGATG 1 cut(s) 234
BstFNI CGCG 1 cut(s) 217
BstHHI GCGC 2 cut(s) 94, 479
BstKTI GATC 2 cut(s) 181, 496
BstMBI GATC 2 cut(s) 178, 493
BstMWI GCNNNNNNNGC 2 cut(s) 129, 407
BstNI CCWGG 3 cut(s) 183, 248, 384
BstSCI CCNGG 3 cut(s) 181, 246, 382
BstSFI CTRYAG 1 cut(s) 115
BstUI CGCG 1 cut(s) 217
BstV1I GCAGC 4 cut(s) 129, 208, 397, 466
BstV2I GAAGAC 1 cut(s) 449
BstX2I RGATCY 1 cut(s) 178
BstYI RGATCY 1 cut(s) 178
BtgZI GCGATG 1 cut(s) 391
BtsCI GGATG 1 cut(s) 234
BtsI GCAGTG 1 cut(s) 112
BtsIMutI CAGTG 2 cut(s) 80, 112
Cac8I GCNNGC 2 cut(s) 130, 215
CciI TCATGA 1 cut(s) 490
CfoI GCGC 2 cut(s) 94, 479
Cfr10I RCCGGY 1 cut(s) 230
Cfr13I GGNCC 1 cut(s) 250
Csp6I GTAC 1 cut(s) 139
CviAII CATG 3 cut(s) 40, 491, 497
CviQI GTAC 1 cut(s) 139
DdeI CTNAG 1 cut(s) 351
DpnI GATC 2 cut(s) 180, 495
DpnII GATC 2 cut(s) 178, 493
Eco47I GGWCC 1 cut(s) 250
Eco57I CTGAAG 2 cut(s) 44, 303
EcoRII CCWGG 3 cut(s) 181, 246, 382
FaeI CATG 3 cut(s) 43, 494, 500
FaiI YATR 5 cut(s) 41, 96, 365, 492, 498
FatI CATG 3 cut(s) 39, 490, 496
FauI CCCGC 1 cut(s) 222
FbaI TGATCA 1 cut(s) 493
Fnu4HI GCNGC 5 cut(s) 118, 121, 197, 411, 480
FokI GGATG 1 cut(s) 221
Fsp4HI GCNGC 5 cut(s) 118, 121, 197, 411, 480
FspBI CTAG 2 cut(s) 101, 508
GlaI GCGC 2 cut(s) 93, 478
GluI GCNGC 5 cut(s) 118, 121, 197, 411, 480
GsuI CTGGAG 1 cut(s) 108
HapII CCGG 1 cut(s) 231
HhaI GCGC 2 cut(s) 94, 479
Hin1II CATG 3 cut(s) 43, 494, 500
Hin6I GCGC 2 cut(s) 92, 477
HinP1I GCGC 2 cut(s) 92, 477
HincII GTYRAC 4 cut(s) 166, 207, 244, 315
HindII GTYRAC 4 cut(s) 166, 207, 244, 315
HindIII AAGCTT 1 cut(s) 422
HinfI GANTC 1 cut(s) 341
HpaII CCGG 1 cut(s) 231
Hpy166II GTNNAC 5 cut(s) 166, 207, 226, 244, 315
Hpy188I TCNGA 3 cut(s) 24, 322, 340
Hpy188III TCNNGA 2 cut(s) 87, 491
Hpy8I GTNNAC 5 cut(s) 166, 207, 226, 244, 315
HpyAV CCTTC 4 cut(s) 180, 412, 423, 449
HpyCH4III ACNGT 2 cut(s) 84, 361
HpyCH4V TGCA 5 cut(s) 80, 117, 128, 299, 413
HpyF10VI GCNNNNNNNGC 2 cut(s) 129, 407
HpyF3I CTNAG 1 cut(s) 351
Hsp92II CATG 3 cut(s) 43, 494, 500
HspAI GCGC 2 cut(s) 92, 477
Ksp22I TGATCA 1 cut(s) 493
Kzo9I GATC 2 cut(s) 178, 493
LmnI GCTCC 2 cut(s) 89, 398
Lsp1109I GCAGC 4 cut(s) 129, 208, 397, 466
LweI GCATC 1 cut(s) 243
MaeI CTAG 2 cut(s) 101, 508
MaeIII GTNAC 1 cut(s) 386
MalI GATC 2 cut(s) 180, 495
MboI GATC 2 cut(s) 178, 493
MboII GAAGA 1 cut(s) 454
MflI RGATCY 1 cut(s) 178
MlyI GAGTC 1 cut(s) 335
MnlI CCTC 2 cut(s) 319, 411
MseI TTAA 1 cut(s) 18
MslI CAYNNNNRTG 1 cut(s) 495
MspA1I CMGCKG 1 cut(s) 199
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 183, 248, 384
MvaI CCWGG 3 cut(s) 183, 248, 384
MvnI CGCG 1 cut(s) 217
MwoI GCNNNNNNNGC 2 cut(s) 129, 407
NdeII GATC 2 cut(s) 178, 493
NlaIII CATG 3 cut(s) 43, 494, 500
NlaIV GGNNCC 3 cut(s) 180, 252, 400
PagI TCATGA 1 cut(s) 490
PflMI CCANNNNNTGG 1 cut(s) 292
PkrI GCNGC 5 cut(s) 119, 122, 198, 412, 481
PleI GAGTC 1 cut(s) 335
PpsI GAGTC 1 cut(s) 335
Psp6I CCWGG 3 cut(s) 181, 246, 382
PspGI CCWGG 3 cut(s) 181, 246, 382
PspN4I GGNNCC 3 cut(s) 180, 252, 400
PspPI GGNCC 1 cut(s) 250
PstI CTGCAG 1 cut(s) 119
PsuI RGATCY 1 cut(s) 178
PvuII CAGCTG 1 cut(s) 199
RsaI GTAC 1 cut(s) 140
RsaNI GTAC 1 cut(s) 139
RseI CAYNNNNRTG 1 cut(s) 495
SaqAI TTAA 1 cut(s) 18
SatI GCNGC 5 cut(s) 118, 121, 197, 411, 480
Sau3AI GATC 2 cut(s) 178, 493
Sau96I GGNCC 1 cut(s) 250
SchI GAGTC 1 cut(s) 335
ScrFI CCNGG 3 cut(s) 183, 248, 384
SetI ASST 5 cut(s) 201, 249, 330, 426, 509
SfaNI GCATC 1 cut(s) 243
SfcI CTRYAG 1 cut(s) 115
SinI GGWCC 1 cut(s) 250
SmiMI CAYNNNNRTG 1 cut(s) 495
SsiI CCGC 2 cut(s) 121, 215
SspMI CTAG 2 cut(s) 101, 508
StyD4I CCNGG 3 cut(s) 181, 246, 382
TaaI ACNGT 2 cut(s) 84, 361
TatI WGTACW 1 cut(s) 138
TauI GCSGC 1 cut(s) 123
Tru1I TTAA 1 cut(s) 18
Tru9I TTAA 1 cut(s) 18
TscAI CASTG 2 cut(s) 87, 119
TseI GCWGC 4 cut(s) 117, 196, 410, 479
TspDTI ATGAA 2 cut(s) 394, 468
TspRI CASTG 2 cut(s) 87, 119
Van91I CCANNNNNTGG 1 cut(s) 292
VpaK11BI GGWCC 1 cut(s) 250
XspI CTAG 2 cut(s) 101, 508
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.