FvH4_7g06660

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0004489
Physical Location & Seq
Forward (+)
6703124 .. 6708839
5716 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g06660.t8

Sequence Viewer

Length: 2514 bp
ATGACGGATTTTGAGCCGCGGCAACAGAAGCCGGAATCGGCTGATGCGTGCGGTGATTTCGAGAGTGGATATGAGGAATTCATGCGTGGGCACTTGGATGAATGTATGTCATTTGCTTCATGTAGCTCTCCTCGGAATCCTGATGATGAGGACGACGACGGTGAACAGCTTGTTCGGAGGAGAAGGAGGTTGGATTTGGAAGGTGATGATTTGGCGGAATCGTCTGCTGCGCGGCGCCACCACTCAAGGATTTTGACCCGCTGGGCGGCGCGGCAGGCGCAGGAGATGATAACTACAATTGAGAGGAGGAACCGGGAGTCGGAGTTGATGGCACTTGCGGGATTGCATACGGTTTCGATGCTCGATTCCTCCTTCTTGAGGGAGTCACAGTCCCCGACGTCGAGGAGGCAGGGGACTGTGGAGAGGCCGAGCACTCAGGCTTCTACGATTTTGCAAATGTGGCGGGAGCTGGAGGATGAGCATTTGTTAAATAGAGCACGTGGGAGGGTGAGGGAGAGGTTGAGGCAGCAGAGGAGTGTGGAGGCTAATACTAATGAGCTAAGGACGAATAGGTCTGATAGTCGGGGGAGTGAGAACCGTGGGAGTTTGGTGGATGCGACTGAGAGTGAGAATGAGTATGGGGCATGGTCCCATGATCAGATGGGTTCACAAAATGAACGAGGTGATAATAATGCGTCTAGCAGGGAGCAATCTCCTGATCTTGGTGAAGTTGAGAGGGAGAGAGTGAGGCAGATCGTACGGGGATGGATGGAAACTGACATTAGTGATCATGCATCCAATGTTGCTCAGAGAAGTAGTAGTCCTAGGGCAGAGTGGCTTGGTGAGACAGAGCGGGAAAGGGTGAGAATTGTCCGGGAGTGGGTGCAAATGGCTAGTCAGCAGAGAGGAGGTCGTGGAGCCCGACGGGAAGATCAGGTCACCAGTGATAGTGCTCAAGTTGGCGGAGAACGTGATGGTTCAGCAGCTGACCAAGAGGAGAGCCAACCAGAGCACATTGGCCGGGATATGTTGAGGTTGCGTGGAAGACAGGCTATAATTGATTTGCTGGTGAGAATTGAGAGGGAAAGACAAAGGGAGCTCCAATCTTTGGTGGAGCATCGAGCTGTCTCTGATTTTGCTCATCGCAATCGCATTCAGTCCTTACTCAGAGGTAGATTCTTGCGAAATGAAAGGCCTATTGAAGAAGGAAGACCTACTTCTGTGGCTGCGGGTGAATTAGTTCAATTGAGACAGCGACACACTGTTTCTGGTTTAAGGGAAGGGTTCCGCTCCAGATTAGAAAATATAGTTCGTGGTCAAGTTGACGGCCAGATTGATTCTCCGACTAACAGTAATGTCAATGATTCTAGAAGCGATCATCCCCAATCAAATGCTTCTCAAGGTATTCAACAGGAAAGTCATGAGCAATCCCAGCTTGGGAGCGAGGGAGGTGACGGTCAGTTTCCTAATCAGTTGGGGAACTTGGAAAATGACACAGCTGTTGGGCGACTTGATTGGCAAGAAACTGCTAATCAAGGGGGGAATTGGCAGGAACCAATTGCTGAAGATGAGGGACGGAACTGGGAGCAGACAACTTTTGATCAATTTAACGATTGGAGGGAAGGTAATGCTGAAGATATGGTTGAAAATTGGCAAGAAACGTCTGTGAATAATTGGCCTCAGGGAACTCCCAGAAATGCTGATGAAGAAACAGGTCATCAACAAGAAGCTCAGGGTACTTGGCGTACAAACAGTTCTCGGGGAGCTGTTGAGAATTGGTCTGAAGGGCCTTCAGGCCCTGTGAGAAATCGTCGTTCTGCCTCAATTAGAAGATTCAACAGATTTAATCCACCAGATGATGATACTGTGTACAGTATGGAACTTAGGGAACTTCTTAGCAGAAGGAGTGTTTCAAATCTTCTTCGTAGTGGATTCCGTGAAAGTCTGGACCAGCTGATACAGTCATACGTTGAAAGGCAAAGTCGTGCTCCCATTGATTGGGATTTGCATAGGACCTTGCCAACACCAACTCCGGCTTCACCAGTGCAGGACCAGGACCAACAGAGGGATGAGCTGAATGGAGATCAGCAAGATGCCATTAACAGACCTTCACGTGTTCTACCACCTCCACCGGTTCCCCCACCACAACCAATATGGCATCAGGACTTACATAACACTGGCTGGTCTCGCCATAGCATGCATCGTTCAGAAATTGAATGGGAGATGTTTAATGATCTCAGGTCAGAAATGGCAAGACTCCAGCAAGGCATGAGCCACATGCAAAGGATGTTGGAGGCCTGCATGGATATGCAATTGGAGTTGCAACGTTCTGTCAGACAGGAAGTGTCGGCAGCTCTCAATCGGTCATCTGGTGAAAAAGGGTCAAGTGCTGAGACATCAGAGGATGGTTCTAAATGGGGTCATATGCGGGCATATGTGTACATGTTCAAAATGTGCAAACGAATTGGTTCGTGGTGGAGGCAAGTGCCCACTTTGTCGAGCGCCTATAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

838

Amino Acids

96.1

Weight (kDa)

5.35

Isoelectric Point (pI)

69.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 571
AatII GACGTC 1 cut(s) 401
AccB1I GGYRCC 1 cut(s) 234
AccB7I CCANNNNNTGG 2 cut(s) 1108, 1998
AccBSI CCGCTC 2 cut(s) 853, 1290
AccII CGCG 3 cut(s) 19, 232, 271
AclI AACGTT 1 cut(s) 2326
AcoI YGGCCR 2 cut(s) 1018, 1327
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 4 cut(s) 1584, 1653, 1776, 1803
AcvI CACGTG 2 cut(s) 500, 2114
AcyI GRCGYC 2 cut(s) 235, 398
AfaI GTAC 5 cut(s) 759, 1738, 1747, 1871, 2441
AfiI CCNNNNNNNGG 9 cut(s) 265, 319, 378, 722, 880, 1108, 1437, 1998, 2065
AflIII ACRYGT 2 cut(s) 2113, 2442
AgeI ACCGGT 1 cut(s) 2131
AgsI TTSAA 9 cut(s) 1202, 1244, 1409, 1646, 1837, 1914, 1973, 2216, 2449
AjnI CCWGG 1 cut(s) 2052
AjuI GAANNNNNNNTTGG 2 cut(s) 2020, 2052
Alw21I GWGCWC 6 cut(s) 434, 499, 955, 1014, 1101, 1990
Alw26I GTCTC 5 cut(s) 839, 1132, 1243, 2190, 2387
AlwNI CAGNNNCTG 2 cut(s) 986, 1799
Ama87I CYCGRG 1 cut(s) 1758
AoxI GGCC 8 cut(s) 425, 1018, 1193, 1327, 1676, 1787, 1795, 2295
ApeKI GCWGC 5 cut(s) 227, 526, 983, 1226, 2351
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 880, 912
AsiGI ACCGGT 1 cut(s) 2131
Asp700I GAANNNNTTC 2 cut(s) 1239, 2467
AspA2I CCTAGG 1 cut(s) 824
AspLEI GCGC 5 cut(s) 232, 237, 271, 280, 2504
AspS9I GGNCC 7 cut(s) 648, 1787, 1796, 1948, 2013, 2050, 2056
AsuC2I CCSGG 3 cut(s) 314, 875, 1022
AvaI CYCGRG 1 cut(s) 1758
AvaII GGWCC 5 cut(s) 648, 1948, 2013, 2050, 2056
AvrII CCTAGG 1 cut(s) 824
AxyI CCTNAGG 1 cut(s) 1680
BaeGI GKGCMC 2 cut(s) 93, 2490
BanI GGYRCC 1 cut(s) 234
BanII GRGCYC 2 cut(s) 922, 1101
BbrPI CACGTG 2 cut(s) 500, 2114
BbsI GAAGAC 2 cut(s) 1051, 1216
Bbv12I GWGCWC 6 cut(s) 434, 499, 955, 1014, 1101, 1990
BbvI GCAGC 5 cut(s) 214, 538, 995, 1213, 2363
BccI CCATC 6 cut(s) 322, 655, 759, 763, 968, 2399
BceAI ACGGC 1 cut(s) 1342
BciT130I CCWGG 1 cut(s) 2054
BclI TGATCA 3 cut(s) 655, 787, 1600
BcnI CCSGG 3 cut(s) 314, 875, 1022
BcoDI GTCTC 5 cut(s) 839, 1132, 1243, 2190, 2387
BfaI CTAG 4 cut(s) 699, 825, 894, 1368
BfmI CTRYAG 1 cut(s) 2506
BfoI RGCGCY 2 cut(s) 238, 2505
BlnI CCTAGG 1 cut(s) 824
Bme1390I CCNGG 4 cut(s) 314, 875, 1022, 2054
Bme18I GGWCC 5 cut(s) 648, 1948, 2013, 2050, 2056
BmeT110I CYCGRG 1 cut(s) 1758
BmgT120I GGNCC 7 cut(s) 648, 1787, 1796, 1948, 2013, 2050, 2056
BmiI GGNNCC 7 cut(s) 236, 311, 650, 919, 1286, 1554, 2136
BmrFI CCNGG 4 cut(s) 314, 875, 1022, 2054
BmrI ACTGGG 1 cut(s) 1591
BmsI GCATC 8 cut(s) 34, 348, 604, 803, 1126, 2083, 2167, 2209
BmuI ACTGGG 1 cut(s) 1591
BpiI GAAGAC 2 cut(s) 1051, 1216
BpmI CTGGAG 3 cut(s) 491, 1276, 2243
Bpu10I CCTNAGC 2 cut(s) 560, 1731
BpuEI CTTGAG 4 cut(s) 229, 397, 939, 1383
BpuMI CCSGG 3 cut(s) 314, 875, 1022
BsaAI YACGTR 2 cut(s) 500, 2114
BsaHI GRCGYC 2 cut(s) 235, 398
BsaI GGTCTC 1 cut(s) 2190
BsaJI CCNNGG 4 cut(s) 17, 131, 598, 824
BsaWI WCCGGW 1 cut(s) 2131
BsaXI ACNNNNNCTCC 8 cut(s) 308, 338, 374, 404, 1609, 1639, 2014, 2044
Bsc4I CCNNNNNNNGG 9 cut(s) 265, 319, 378, 722, 880, 1108, 1437, 1998, 2065
Bse118I RCCGGY 1 cut(s) 2131
Bse1I ACTGG 4 cut(s) 942, 1586, 2042, 2182
Bse21I CCTNAGG 1 cut(s) 1680
BseBI CCWGG 1 cut(s) 2054
BseDI CCNNGG 4 cut(s) 17, 131, 598, 824
BseLI CCNNNNNNNGG 9 cut(s) 265, 319, 378, 722, 880, 1108, 1437, 1998, 2065
BseMII CTCAG 8 cut(s) 449, 612, 821, 1180, 1694, 1745, 2251, 2382
BseNI ACTGG 4 cut(s) 942, 1586, 2042, 2182
BseRI GAGGAG 7 cut(s) 120, 193, 319, 418, 547, 921, 1010
BseSI GKGCMC 2 cut(s) 93, 2490
BseXI GCAGC 5 cut(s) 214, 538, 995, 1213, 2363
BseYI CCCAGC 2 cut(s) 261, 1431
BsgI GTGCAG 1 cut(s) 2066
Bsh1236I CGCG 3 cut(s) 19, 232, 271
BshFI GGCC 8 cut(s) 427, 1020, 1195, 1329, 1678, 1789, 1797, 2297
BshNI GGYRCC 1 cut(s) 234
BshTI ACCGGT 1 cut(s) 2131
BsiHKAI GWGCWC 6 cut(s) 434, 499, 955, 1014, 1101, 1990
BsiHKCI CYCGRG 1 cut(s) 1758
BsiSI CCGG 6 cut(s) 32, 313, 874, 1021, 2033, 2132
BsiWI CGTACG 1 cut(s) 757
BslFI GGGAC 4 cut(s) 376, 427, 634, 1587
BslI CCNNNNNNNGG 9 cut(s) 265, 319, 378, 722, 880, 1108, 1437, 1998, 2065
BsmAI GTCTC 5 cut(s) 839, 1132, 1243, 2190, 2387
BsmFI GGGAC 4 cut(s) 376, 427, 634, 1587
BsmI GAATGC 1 cut(s) 1152
BsnI GGCC 8 cut(s) 427, 1020, 1195, 1329, 1678, 1789, 1797, 2297
Bso31I GGTCTC 1 cut(s) 2190
BsoBI CYCGRG 1 cut(s) 1758
Bsp1286I GDGCHC 9 cut(s) 93, 434, 499, 922, 955, 1014, 1101, 1990, 2490
Bsp1407I TGTACA 2 cut(s) 1869, 2439
Bsp143I GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
BspANI GGCC 8 cut(s) 427, 1020, 1195, 1329, 1678, 1789, 1797, 2297
BspCNI CTCAG 8 cut(s) 448, 613, 820, 1179, 1693, 1744, 2250, 2383
BspFNI CGCG 3 cut(s) 19, 232, 271
BspHI TCATGA 1 cut(s) 1420
BspLI GGNNCC 7 cut(s) 236, 311, 650, 919, 1286, 1554, 2136
BspT107I GGYRCC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 2190
BsrBI CCGCTC 2 cut(s) 853, 1290
BsrFI RCCGGY 1 cut(s) 2131
BsrGI TGTACA 2 cut(s) 1869, 2439
BsrI ACTGG 4 cut(s) 942, 1586, 2042, 2182
BssAI RCCGGY 1 cut(s) 2131
BssECI CCNNGG 4 cut(s) 17, 131, 598, 824
BssMI GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
BssNI GRCGYC 2 cut(s) 235, 398
BssT1I CCWWGG 1 cut(s) 824
Bst2UI CCWGG 1 cut(s) 2054
BstACI GRCGYC 2 cut(s) 235, 398
BstAUI TGTACA 2 cut(s) 1869, 2439
BstBAI YACGTR 2 cut(s) 500, 2114
BstC8I GCNNGC 5 cut(s) 49, 276, 2198, 2299, 2430
BstDSI CCRYGG 2 cut(s) 17, 598
BstEII GGTNACC 1 cut(s) 937
BstENI CCTNNNNNAGG 1 cut(s) 376
BstFNI CGCG 3 cut(s) 19, 232, 271
BstH2I RGCGCY 2 cut(s) 238, 2505
BstHHI GCGC 5 cut(s) 232, 237, 271, 280, 2504
BstKTI GATC 9 cut(s) 658, 721, 756, 790, 934, 1378, 1603, 2086, 2236
BstMAI GTCTC 5 cut(s) 839, 1132, 1243, 2190, 2387
BstMBI GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
BstMWI GCNNNNNNNGC 6 cut(s) 28, 275, 277, 460, 1432, 2187
BstNI CCWGG 1 cut(s) 2054
BstNSI RCATGY 3 cut(s) 2200, 2281, 2446
BstPI GGTNACC 1 cut(s) 937
BstSCI CCNGG 4 cut(s) 312, 873, 1020, 2052
BstSFI CTRYAG 1 cut(s) 2506
BstSLI GKGCMC 2 cut(s) 93, 2490
BstUI CGCG 3 cut(s) 19, 232, 271
BstV1I GCAGC 5 cut(s) 214, 538, 995, 1213, 2363
BstV2I GAAGAC 2 cut(s) 1051, 1216
Bsu36I CCTNAGG 1 cut(s) 1680
BsuRI GGCC 8 cut(s) 427, 1020, 1195, 1329, 1678, 1789, 1797, 2297
BtgI CCRYGG 2 cut(s) 17, 598
BtgZI GCGATG 1 cut(s) 1127
BtsIMutI CAGTG 4 cut(s) 949, 1260, 2049, 2175
Cac8I GCNNGC 5 cut(s) 49, 276, 2198, 2299, 2430
CaiI CAGNNNCTG 2 cut(s) 986, 1799
CciI TCATGA 1 cut(s) 1420
CfoI GCGC 5 cut(s) 232, 237, 271, 280, 2504
Cfr10I RCCGGY 1 cut(s) 2131
Cfr13I GGNCC 7 cut(s) 648, 1787, 1796, 1948, 2013, 2050, 2056
Cfr42I CCGCGG 1 cut(s) 20
CseI GACGC 1 cut(s) 684
Csp6I GTAC 5 cut(s) 758, 1737, 1746, 1870, 2440
CspAI ACCGGT 1 cut(s) 2131
CviQI GTAC 5 cut(s) 758, 1737, 1746, 1870, 2440
DinI GGCGCC 1 cut(s) 236
DpnI GATC 9 cut(s) 657, 720, 755, 789, 933, 1377, 1602, 2085, 2235
DpnII GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
DrdI GACNNNNNNGTC 1 cut(s) 571
DseDI GACNNNNNNGTC 1 cut(s) 571
EaeI YGGCCR 2 cut(s) 1018, 1327
EciI GGCGGA 2 cut(s) 230, 978
Ecl136II GAGCTC 1 cut(s) 1099
Eco130I CCWWGG 1 cut(s) 824
Eco147I AGGCCT 2 cut(s) 1195, 2297
Eco24I GRGCYC 2 cut(s) 922, 1101
Eco31I GGTCTC 1 cut(s) 2190
Eco47I GGWCC 5 cut(s) 648, 1948, 2013, 2050, 2056
Eco53kI GAGCTC 1 cut(s) 1099
Eco57I CTGAAG 4 cut(s) 1584, 1653, 1776, 1803
Eco72I CACGTG 2 cut(s) 500, 2114
Eco81I CCTNAGG 1 cut(s) 1680
Eco88I CYCGRG 1 cut(s) 1758
Eco91I GGTNACC 1 cut(s) 937
EcoICRI GAGCTC 1 cut(s) 1099
EcoNI CCTNNNNNAGG 1 cut(s) 376
EcoO109I RGGNCCY 3 cut(s) 1787, 1796, 2013
EcoO65I GGTNACC 1 cut(s) 937
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 1 cut(s) 2052
EcoT14I CCWWGG 1 cut(s) 824
EcoT22I ATGCAT 2 cut(s) 796, 2202
EcoT38I GRGCYC 2 cut(s) 922, 1101
EgeI GGCGCC 1 cut(s) 236
EheI GGCGCC 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 824
FalI AAGNNNNNCTT 2 cut(s) 1201, 1233
FaqI GGGAC 4 cut(s) 376, 427, 634, 1587
FauI CCCGC 6 cut(s) 266, 331, 456, 846, 1222, 2421
FauNDI CATATG 2 cut(s) 2424, 2434
FbaI TGATCA 3 cut(s) 655, 787, 1600
FriOI GRGCYC 2 cut(s) 922, 1101
FspBI CTAG 4 cut(s) 699, 825, 894, 1368
GlaI GCGC 5 cut(s) 231, 236, 270, 279, 2503
GsaI CCCAGC 2 cut(s) 265, 1435
GsuI CTGGAG 3 cut(s) 491, 1276, 2243
HaeII RGCGCY 2 cut(s) 238, 2505
HaeIII GGCC 8 cut(s) 427, 1020, 1195, 1329, 1678, 1789, 1797, 2297
HapII CCGG 6 cut(s) 32, 313, 874, 1021, 2033, 2132
HgaI GACGC 1 cut(s) 684
HhaI GCGC 5 cut(s) 232, 237, 271, 280, 2504
Hin1I GRCGYC 2 cut(s) 235, 398
Hin6I GCGC 5 cut(s) 230, 235, 269, 278, 2502
HinP1I GCGC 5 cut(s) 230, 235, 269, 278, 2502
HincII GTYRAC 1 cut(s) 1324
HindII GTYRAC 1 cut(s) 1324
HpaII CCGG 6 cut(s) 32, 313, 874, 1021, 2033, 2132
Hpy166II GTNNAC 5 cut(s) 164, 668, 1324, 1870, 2440
Hpy188III TCNNGA 9 cut(s) 61, 140, 376, 716, 1293, 1368, 1421, 1946, 2162
Hpy8I GTNNAC 5 cut(s) 164, 668, 1324, 1870, 2440
Hpy99I CGWCG 6 cut(s) 158, 161, 400, 403, 927, 1815
HpyCH4IV ACGT 7 cut(s) 398, 499, 970, 1661, 1968, 2113, 2326
HpyF10VI GCNNNNNNNGC 6 cut(s) 28, 275, 277, 460, 1432, 2187
HpySE526I ACGT 7 cut(s) 398, 499, 970, 1661, 1968, 2113, 2326
Hsp92I GRCGYC 2 cut(s) 235, 398
HspAI GCGC 5 cut(s) 230, 235, 269, 278, 2502
KasI GGCGCC 1 cut(s) 234
Ksp22I TGATCA 3 cut(s) 655, 787, 1600
KspI CCGCGG 1 cut(s) 20
Kzo9I GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
Lsp1109I GCAGC 5 cut(s) 214, 538, 995, 1213, 2363
LweI GCATC 8 cut(s) 34, 348, 604, 803, 1126, 2083, 2167, 2209
MaeI CTAG 4 cut(s) 699, 825, 894, 1368
MaeII ACGT 7 cut(s) 398, 499, 970, 1661, 1968, 2113, 2326
MaeIII GTNAC 3 cut(s) 384, 937, 1451
MalI GATC 9 cut(s) 657, 720, 755, 789, 933, 1377, 1602, 2085, 2235
MbiI CCGCTC 2 cut(s) 853, 1290
MboI GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
MfeI CAATTG 4 cut(s) 297, 1244, 1557, 2312
MhlI GDGCHC 9 cut(s) 93, 434, 499, 922, 955, 1014, 1101, 1990, 2490
Mly113I GGCGCC 1 cut(s) 235
MlyI GAGTC 3 cut(s) 326, 392, 2250
MmeI TCCRAC 4 cut(s) 171, 300, 1367, 2271
Mph1103I ATGCAT 2 cut(s) 796, 2202
MroXI GAANNNNTTC 2 cut(s) 1239, 2467
MseI TTAA 6 cut(s) 488, 1274, 1608, 1845, 2100, 2229
MslI CAYNNNNRTG 2 cut(s) 96, 2306
MspA1I CMGCKG 5 cut(s) 19, 261, 986, 1499, 1954
MspI CCGG 6 cut(s) 32, 313, 874, 1021, 2033, 2132
MspR9I CCNGG 4 cut(s) 314, 875, 1022, 2054
MteI GCGCNGCGC 1 cut(s) 233
MunI CAATTG 4 cut(s) 297, 1244, 1557, 2312
Mva1269I GAATGC 1 cut(s) 1152
MvaI CCWGG 1 cut(s) 2054
MvnI CGCG 3 cut(s) 19, 232, 271
MwoI GCNNNNNNNGC 6 cut(s) 28, 275, 277, 460, 1432, 2187
NarI GGCGCC 1 cut(s) 235
NciI CCSGG 3 cut(s) 314, 875, 1022
NdeI CATATG 2 cut(s) 2424, 2434
NdeII GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
NlaIV GGNNCC 7 cut(s) 236, 311, 650, 919, 1286, 1554, 2136
NmeAIII GCCGAG 1 cut(s) 453
NmuCI GTSAC 3 cut(s) 384, 937, 1451
NsiI ATGCAT 2 cut(s) 796, 2202
NspI RCATGY 3 cut(s) 2200, 2281, 2446
PaeI GCATGC 1 cut(s) 2200
PagI TCATGA 1 cut(s) 1420
PceI AGGCCT 2 cut(s) 1195, 2297
PciI ACATGT 1 cut(s) 2442
PcsI WCGNNNNNNNCGW 2 cut(s) 44, 919
PctI GAATGC 1 cut(s) 1152
PdmI GAANNNNTTC 2 cut(s) 1239, 2467
PfeI GAWTC 9 cut(s) 35, 136, 218, 365, 1176, 1337, 1364, 1833, 1932
Pfl23II CGTACG 1 cut(s) 757
PflMI CCANNNNNTGG 2 cut(s) 1108, 1998
PfoI TCCNGGA 1 cut(s) 873
PinAI ACCGGT 1 cut(s) 2131
PleI GAGTC 3 cut(s) 325, 391, 2250
PluTI GGCGCC 1 cut(s) 238
PmaCI CACGTG 2 cut(s) 500, 2114
PmlI CACGTG 2 cut(s) 500, 2114
PpsI GAGTC 3 cut(s) 325, 391, 2250
Ppu21I YACGTR 2 cut(s) 500, 2114
PpuMI RGGWCCY 1 cut(s) 2013
PscI ACATGT 1 cut(s) 2442
Psp124BI GAGCTC 1 cut(s) 1101
Psp1406I AACGTT 1 cut(s) 2326
Psp5II RGGWCCY 1 cut(s) 2013
Psp6I CCWGG 1 cut(s) 2052
PspCI CACGTG 2 cut(s) 500, 2114
PspEI GGTNACC 1 cut(s) 937
PspFI CCCAGC 2 cut(s) 261, 1431
PspGI CCWGG 1 cut(s) 2052
PspLI CGTACG 1 cut(s) 757
PspN4I GGNNCC 7 cut(s) 236, 311, 650, 919, 1286, 1554, 2136
PspPI GGNCC 7 cut(s) 648, 1787, 1796, 1948, 2013, 2050, 2056
PspPPI RGGWCCY 1 cut(s) 2013
PsrI GAACNNNNNNTAC 2 cut(s) 1738, 1770
PstNI CAGNNNCTG 2 cut(s) 986, 1799
PvuII CAGCTG 3 cut(s) 986, 1499, 1954
RsaI GTAC 5 cut(s) 759, 1738, 1747, 1871, 2441
RsaNI GTAC 5 cut(s) 758, 1737, 1746, 1870, 2440
RseI CAYNNNNRTG 2 cut(s) 96, 2306
SacI GAGCTC 1 cut(s) 1101
SacII CCGCGG 1 cut(s) 20
SaqAI TTAA 6 cut(s) 488, 1274, 1608, 1845, 2100, 2229
Sau3AI GATC 9 cut(s) 655, 718, 753, 787, 931, 1375, 1600, 2083, 2233
Sau96I GGNCC 7 cut(s) 648, 1787, 1796, 1948, 2013, 2050, 2056
SchI GAGTC 3 cut(s) 326, 392, 2250
ScrFI CCNGG 4 cut(s) 314, 875, 1022, 2054
SduI GDGCHC 9 cut(s) 93, 434, 499, 922, 955, 1014, 1101, 1990, 2490
SfaNI GCATC 8 cut(s) 34, 348, 604, 803, 1126, 2083, 2167, 2209
SfcI CTRYAG 1 cut(s) 2506
SfoI GGCGCC 1 cut(s) 236
Sfr303I CCGCGG 1 cut(s) 20
SgrBI CCGCGG 1 cut(s) 20
SinI GGWCC 5 cut(s) 648, 1948, 2013, 2050, 2056
SmiMI CAYNNNNRTG 2 cut(s) 96, 2306
SmlI CTYRAG 4 cut(s) 244, 376, 954, 1398
SmoI CTYRAG 4 cut(s) 244, 376, 954, 1398
SphI GCATGC 1 cut(s) 2200
SseBI AGGCCT 2 cut(s) 1195, 2297
SspDI GGCGCC 1 cut(s) 234
SspMI CTAG 4 cut(s) 699, 825, 894, 1368
SstI GAGCTC 1 cut(s) 1101
StuI AGGCCT 2 cut(s) 1195, 2297
StyD4I CCNGG 4 cut(s) 312, 873, 1020, 2052
StyI CCWWGG 1 cut(s) 824
TaiI ACGT 7 cut(s) 401, 502, 973, 1664, 1971, 2116, 2329
TaqI TCGA 6 cut(s) 60, 356, 363, 401, 1120, 2498
TaqII GACCGA 1 cut(s) 2352
TatI WGTACW 2 cut(s) 1869, 2439
TauI GCSGC 5 cut(s) 19, 22, 235, 269, 274
TfiI GAWTC 9 cut(s) 35, 136, 218, 365, 1176, 1337, 1364, 1833, 1932
Tru1I TTAA 6 cut(s) 488, 1274, 1608, 1845, 2100, 2229
Tru9I TTAA 6 cut(s) 488, 1274, 1608, 1845, 2100, 2229
TscAI CASTG 4 cut(s) 949, 1267, 2049, 2182
TseFI GTSAC 3 cut(s) 384, 937, 1451
TseI GCWGC 5 cut(s) 227, 526, 983, 1226, 2351
Tsp45I GTSAC 3 cut(s) 384, 937, 1451
TspDTI ATGAA 6 cut(s) 70, 108, 114, 690, 1203, 1719
TspGWI ACGGA 3 cut(s) 20, 1591, 1925
TspRI CASTG 4 cut(s) 949, 1267, 2049, 2182
Van91I CCANNNNNTGG 2 cut(s) 1108, 1998
VpaK11BI GGWCC 5 cut(s) 648, 1948, 2013, 2050, 2056
XagI CCTNNNNNAGG 1 cut(s) 376
XapI RAATTY 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 1367
XceI RCATGY 3 cut(s) 2200, 2281, 2446
XcmI CCANNNNNNNNNTGG 1 cut(s) 2151
XmaJI CCTAGG 1 cut(s) 824
XmnI GAANNNNTTC 2 cut(s) 1239, 2467
XspI CTAG 4 cut(s) 699, 825, 894, 1368
ZraI GACGTC 1 cut(s) 399
Zsp2I ATGCAT 2 cut(s) 796, 2202
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.