Rorug01G0123400

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0004489
Physical Location & Seq
Forward (+)
21302930 .. 21304102
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0123400.1

Sequence Viewer

Length: 1131 bp
ATGACAGGTGTACCCTCAATCCCCGGAATAGAACGATCCCTACTTACTTATACTACTAATGATATTTCAGGGTTAAATTATGCGCTTGCTCAAAGCATATCATCGTTCTGGCAGCTCTTACGTGATTTGCGAGATCTGGACGTACTGCCATGGGTTGTGATTGGGGATTTCAACGAAATCCTCAATAACAGCGAGAAAATAGATGGTCCGATGAGGGCAGAACGACAGATGCGAGGGTTTCAAGGCCCTCAGTCCACATGGTGGAATTCCAATACCCAACTTCGGCTTGACCCAGCGGTTTGTACACCTTCCTGGTTCGATATCTATGGCCATGCTAGGTTGCGCCATCTACCACCAAGTAACTTGGACCATGTCCCCATCCTGCTTCATGCGAGTACCGCACAGTTGCCTGAGCGGAGGAATTATCACAGATTTAAATTTGAGTCGTACTGGCTACAGAATAGAGAGTGTGATGATGTGGTGAATGCTGCTTGGGCTACTGATGTCGTCGGAACTCCTATGTTTCAAGTGACAAAAAAAATCACCTATACTAGGTTGGAACTGGATAAATGGCAGAATAGAACATATAAGGGTAGGCAAATGCAGATGCTTGGCATTAGAACGAGACTAGAGGAGCTCCTAGATGTTCGGTGTTCAGATGTAGTGACAGAAGAGAAGAAACAATTGATGGAGAATTTGCAGCGACTTCTTTCACAAGAAGAGAGCTTTTGGAAACAACGATCTAAAATACAGTGGTTAAAGGAAGGGGATAGGAACACAGGCTATTTCCACAGGAAGTCTGCTAATCGGAGAAGGAAAAATACCCTTTGTGGGTTATATGATGAAAATGGTGAATGGTGTGATGACGAAAGAGGTATGGAAAATGTAATTACCTCTTATTTCTCTTCTATGTTCACTGCAACTGAAATTGACAATGATGCCATGAATACTACCTTGGAAGCCATTCATACTTGCGTTTCACATGATATGAATGAAAAATTGTGCACACAGTATACTCAGGAGGAGGTGAAGTGTGCTCTATTTCAGATGTATCCAACCAAATCACCGGGGCCGGATGGAATGCCTCCCATATTTTTTCAGATTACTGGGACACCATTTGGGGAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

376

Amino Acids

43.78

Weight (kDa)

5.83

Isoelectric Point (pI)

42.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 261
AccBSI CCGCTC 1 cut(s) 415
AccI GTMKAC 1 cut(s) 1013
AciI CCGC 3 cut(s) 296, 399, 415
AclWI GGATC 1 cut(s) 30
AcoI YGGCCR 1 cut(s) 328
AcsI RAATTY 3 cut(s) 265, 437, 694
AdeI CACNNNGTG 1 cut(s) 261
AfaI GTAC 5 cut(s) 12, 144, 304, 397, 449
AfiI CCNNNNNNNGG 4 cut(s) 261, 282, 552, 831
AgsI TTSAA 3 cut(s) 172, 242, 527
AjnI CCWGG 1 cut(s) 311
AjuI GAANNNNNNNTTGG 2 cut(s) 938, 970
AluBI AGCT 3 cut(s) 115, 637, 726
AluI AGCT 3 cut(s) 115, 637, 726
Alw21I GWGCWC 3 cut(s) 639, 1007, 1039
Alw26I GTCTC 2 cut(s) 619, 1118
Alw44I GTGCAC 1 cut(s) 1003
AlwI GGATC 1 cut(s) 30
AoxI GGCC 3 cut(s) 244, 328, 1070
ApaLI GTGCAC 1 cut(s) 1003
ApeKI GCWGC 3 cut(s) 112, 488, 700
ApoI RAATTY 3 cut(s) 265, 437, 694
Asp700I GAANNNNTTC 1 cut(s) 963
AspLEI GCGC 2 cut(s) 85, 345
AspS9I GGNCC 4 cut(s) 206, 245, 367, 1070
AsuC2I CCSGG 2 cut(s) 24, 1068
AsuHPI GGTGA 5 cut(s) 493, 535, 863, 1039, 1056
AvaII GGWCC 2 cut(s) 206, 367
BaeGI GKGCMC 1 cut(s) 1007
BaeI ACNNNNGTAYC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 330
BanII GRGCYC 1 cut(s) 639
BarI GAAGNNNNNNTAC 2 cut(s) 805, 837
Bbv12I GWGCWC 3 cut(s) 639, 1007, 1039
BbvI GCAGC 3 cut(s) 124, 475, 712
BccI CCATC 5 cut(s) 197, 354, 386, 682, 1070
BciT130I CCWGG 1 cut(s) 313
BciVI GTATCC 1 cut(s) 1062
BcnI CCSGG 2 cut(s) 24, 1068
BcoDI GTCTC 2 cut(s) 619, 1118
BfaI CTAG 4 cut(s) 336, 552, 629, 641
BfmI CTRYAG 1 cut(s) 455
BfuI GTATCC 1 cut(s) 1062
BglII AGATCT 1 cut(s) 133
BisI GCNGC 3 cut(s) 113, 489, 701
BlsI GCNGC 3 cut(s) 114, 490, 702
Bme1390I CCNGG 3 cut(s) 24, 313, 1068
Bme18I GGWCC 2 cut(s) 206, 367
BmgT120I GGNCC 4 cut(s) 206, 245, 367, 1070
BmiI GGNNCC 1 cut(s) 1071
BmrFI CCNGG 3 cut(s) 24, 313, 1068
BmrI ACTGGG 1 cut(s) 1116
BmsI GCATC 3 cut(s) 219, 597, 928
BmuI ACTGGG 1 cut(s) 1116
Bpu10I CCTNAGC 1 cut(s) 411
BpuMI CCSGG 2 cut(s) 24, 1068
BsaAI YACGTR 1 cut(s) 122
BsaJI CCNNGG 4 cut(s) 22, 149, 954, 1067
BsaXI ACNNNNNCTCC 2 cut(s) 1016, 1046
Bsc4I CCNNNNNNNGG 4 cut(s) 261, 282, 552, 831
Bse1I ACTGG 3 cut(s) 455, 567, 1111
BseBI CCWGG 1 cut(s) 313
BseDI CCNNGG 4 cut(s) 22, 149, 954, 1067
BseGI GGATG 2 cut(s) 378, 1081
BseLI CCNNNNNNNGG 4 cut(s) 261, 282, 552, 831
BseMII CTCAG 3 cut(s) 263, 402, 1031
BseNI ACTGG 3 cut(s) 455, 567, 1111
BseRI GAGGAG 2 cut(s) 647, 1037
BseSI GKGCMC 1 cut(s) 1007
BseXI GCAGC 3 cut(s) 124, 475, 712
BseYI CCCAGC 1 cut(s) 292
BshFI GGCC 3 cut(s) 246, 330, 1072
BsiHKAI GWGCWC 3 cut(s) 639, 1007, 1039
BsiSI CCGG 3 cut(s) 24, 1067, 1073
BslFI GGGAC 2 cut(s) 359, 1123
BslI CCNNNNNNNGG 4 cut(s) 261, 282, 552, 831
BsmAI GTCTC 2 cut(s) 619, 1118
BsmFI GGGAC 2 cut(s) 359, 1123
BsmI GAATGC 2 cut(s) 490, 1086
BsnI GGCC 3 cut(s) 246, 330, 1072
Bsp1286I GDGCHC 3 cut(s) 639, 1007, 1039
Bsp1407I TGTACA 1 cut(s) 302
Bsp143I GATC 3 cut(s) 35, 133, 740
Bsp19I CCATGG 1 cut(s) 149
BspACI CCGC 3 cut(s) 296, 399, 415
BspANI GGCC 3 cut(s) 246, 330, 1072
BspCNI CTCAG 3 cut(s) 262, 403, 1030
BspLI GGNNCC 1 cut(s) 1071
BspPI GGATC 1 cut(s) 30
BsrBI CCGCTC 1 cut(s) 415
BsrGI TGTACA 1 cut(s) 302
BsrI ACTGG 3 cut(s) 455, 567, 1111
BssECI CCNNGG 4 cut(s) 22, 149, 954, 1067
BssMI GATC 3 cut(s) 35, 133, 740
BssNAI GTATAC 1 cut(s) 1014
BssT1I CCWWGG 2 cut(s) 149, 954
Bst1107I GTATAC 1 cut(s) 1014
Bst2UI CCWGG 1 cut(s) 313
Bst4CI ACNGT 3 cut(s) 405, 753, 1011
Bst6I CTCTTC 3 cut(s) 666, 714, 910
BstAUI TGTACA 1 cut(s) 302
BstBAI YACGTR 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 87
BstDEI CTNAG 3 cut(s) 249, 411, 1017
BstDSI CCRYGG 1 cut(s) 149
BstENI CCTNNNNNAGG 1 cut(s) 550
BstF5I GGATG 2 cut(s) 378, 1081
BstHHI GCGC 2 cut(s) 85, 345
BstKTI GATC 3 cut(s) 38, 136, 743
BstMAI GTCTC 2 cut(s) 619, 1118
BstMBI GATC 3 cut(s) 35, 133, 740
BstMWI GCNNNNNNNGC 2 cut(s) 398, 494
BstNI CCWGG 1 cut(s) 313
BstSCI CCNGG 3 cut(s) 22, 311, 1066
BstSFI CTRYAG 1 cut(s) 455
BstSLI GKGCMC 1 cut(s) 1007
BstV1I GCAGC 3 cut(s) 124, 475, 712
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZ17I GTATAC 1 cut(s) 1014
BsuI GTATCC 1 cut(s) 1062
BsuRI GGCC 3 cut(s) 246, 330, 1072
BtgI CCRYGG 1 cut(s) 149
BtsCI GGATG 2 cut(s) 378, 1081
BtsI GCAGTG 1 cut(s) 915
BtsIMutI CAGTG 2 cut(s) 758, 915
Cac8I GCNNGC 1 cut(s) 87
CfoI GCGC 2 cut(s) 85, 345
Cfr13I GGNCC 4 cut(s) 206, 245, 367, 1070
Csp6I GTAC 5 cut(s) 11, 143, 303, 396, 448
CviAII CATG 7 cut(s) 150, 258, 332, 371, 389, 943, 983
CviQI GTAC 5 cut(s) 11, 143, 303, 396, 448
DdeI CTNAG 3 cut(s) 249, 411, 1017
DpnI GATC 3 cut(s) 37, 135, 742
DpnII GATC 3 cut(s) 35, 133, 740
DraI TTTAAA 1 cut(s) 436
DraIII CACNNNGTG 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 328
Eam1104I CTCTTC 3 cut(s) 666, 714, 910
EarI CTCTTC 3 cut(s) 666, 714, 910
Ecl136II GAGCTC 1 cut(s) 637
Eco130I CCWWGG 2 cut(s) 149, 954
Eco24I GRGCYC 1 cut(s) 639
Eco32I GATATC 1 cut(s) 322
Eco47I GGWCC 2 cut(s) 206, 367
Eco53kI GAGCTC 1 cut(s) 637
EcoICRI GAGCTC 1 cut(s) 637
EcoNI CCTNNNNNAGG 1 cut(s) 550
EcoO109I RGGNCCY 1 cut(s) 245
EcoRI GAATTC 1 cut(s) 265
EcoRII CCWGG 1 cut(s) 311
EcoRV GATATC 1 cut(s) 322
EcoT14I CCWWGG 2 cut(s) 149, 954
EcoT38I GRGCYC 1 cut(s) 639
ErhI CCWWGG 2 cut(s) 149, 954
FaeI CATG 7 cut(s) 153, 261, 335, 374, 392, 946, 986
FaqI GGGAC 2 cut(s) 359, 1123
FatI CATG 7 cut(s) 149, 257, 331, 370, 388, 942, 982
FblI GTMKAC 1 cut(s) 1013
Fnu4HI GCNGC 3 cut(s) 113, 489, 701
FokI GGATG 2 cut(s) 365, 1088
FriOI GRGCYC 1 cut(s) 639
Fsp4HI GCNGC 3 cut(s) 113, 489, 701
FspBI CTAG 4 cut(s) 336, 552, 629, 641
GlaI GCGC 2 cut(s) 84, 344
GluI GCNGC 3 cut(s) 113, 489, 701
GsaI CCCAGC 1 cut(s) 296
HaeIII GGCC 3 cut(s) 246, 330, 1072
HapII CCGG 3 cut(s) 24, 1067, 1073
HhaI GCGC 2 cut(s) 85, 345
Hin1II CATG 7 cut(s) 153, 261, 335, 374, 392, 946, 986
Hin6I GCGC 2 cut(s) 83, 343
HinP1I GCGC 2 cut(s) 83, 343
HinfI GANTC 1 cut(s) 443
HpaII CCGG 3 cut(s) 24, 1067, 1073
HphI GGTGA 5 cut(s) 493, 535, 863, 1039, 1056
Hpy166II GTNNAC 6 cut(s) 11, 255, 305, 915, 1005, 1014
Hpy188I TCNGA 6 cut(s) 210, 512, 658, 810, 1047, 1101
Hpy188III TCNNGA 2 cut(s) 137, 1019
Hpy8I GTNNAC 6 cut(s) 11, 255, 305, 915, 1005, 1014
Hpy99I CGWCG 1 cut(s) 512
HpyAV CCTTC 3 cut(s) 318, 758, 807
HpyCH4III ACNGT 3 cut(s) 405, 753, 1011
HpyCH4IV ACGT 2 cut(s) 121, 141
HpyCH4V TGCA 4 cut(s) 604, 700, 920, 1005
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 494
HpyF3I CTNAG 3 cut(s) 249, 411, 1017
HpySE526I ACGT 2 cut(s) 121, 141
Hsp92II CATG 7 cut(s) 153, 261, 335, 374, 392, 946, 986
HspAI GCGC 2 cut(s) 83, 343
Kzo9I GATC 3 cut(s) 35, 133, 740
LmnI GCTCC 2 cut(s) 634, 642
Lsp1109I GCAGC 3 cut(s) 124, 475, 712
LweI GCATC 3 cut(s) 219, 597, 928
MaeI CTAG 4 cut(s) 336, 552, 629, 641
MaeII ACGT 2 cut(s) 121, 141
MaeIII GTNAC 3 cut(s) 359, 529, 664
MalI GATC 3 cut(s) 37, 135, 742
MbiI CCGCTC 1 cut(s) 415
MboI GATC 3 cut(s) 35, 133, 740
MboII GAAGA 4 cut(s) 683, 688, 731, 897
MfeI CAATTG 1 cut(s) 683
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 3 cut(s) 639, 1007, 1039
MlsI TGGCCA 1 cut(s) 330
MluCI AATT 9 cut(s) 76, 265, 421, 437, 683, 694, 888, 927, 998
MluNI TGGCCA 1 cut(s) 330
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 3 cut(s) 490, 537, 1079
Mox20I TGGCCA 1 cut(s) 330
MroXI GAANNNNTTC 1 cut(s) 963
MscI TGGCCA 1 cut(s) 330
MseI TTAA 3 cut(s) 74, 435, 758
Msp20I TGGCCA 1 cut(s) 330
MspA1I CMGCKG 1 cut(s) 296
MspI CCGG 3 cut(s) 24, 1067, 1073
MspR9I CCNGG 3 cut(s) 24, 313, 1068
MunI CAATTG 1 cut(s) 683
Mva1269I GAATGC 2 cut(s) 490, 1086
MvaI CCWGG 1 cut(s) 313
MwoI GCNNNNNNNGC 2 cut(s) 398, 494
NciI CCSGG 2 cut(s) 24, 1068
NcoI CCATGG 1 cut(s) 149
NdeII GATC 3 cut(s) 35, 133, 740
NlaIII CATG 7 cut(s) 153, 261, 335, 374, 392, 946, 986
NlaIV GGNNCC 1 cut(s) 1071
NmuCI GTSAC 2 cut(s) 529, 664
PcsI WCGNNNNNNNCGW 2 cut(s) 127, 229
PctI GAATGC 2 cut(s) 490, 1086
PdmI GAANNNNTTC 1 cut(s) 963
PflFI GACNNNGTC 1 cut(s) 371
PflMI CCANNNNNTGG 1 cut(s) 261
PkrI GCNGC 3 cut(s) 114, 490, 702
PleI GAGTC 1 cut(s) 451
PpsI GAGTC 1 cut(s) 451
Ppu21I YACGTR 1 cut(s) 122
Psp124BI GAGCTC 1 cut(s) 639
Psp6I CCWGG 1 cut(s) 311
PspFI CCCAGC 1 cut(s) 292
PspGI CCWGG 1 cut(s) 311
PspN4I GGNNCC 1 cut(s) 1071
PspPI GGNCC 4 cut(s) 206, 245, 367, 1070
PsrI GAACNNNNNNTAC 2 cut(s) 24, 56
PsuI RGATCY 1 cut(s) 133
PsyI GACNNNGTC 1 cut(s) 371
RsaI GTAC 5 cut(s) 12, 144, 304, 397, 449
RsaNI GTAC 5 cut(s) 11, 143, 303, 396, 448
SacI GAGCTC 1 cut(s) 639
SaqAI TTAA 3 cut(s) 74, 435, 758
SatI GCNGC 3 cut(s) 113, 489, 701
Sau3AI GATC 3 cut(s) 35, 133, 740
Sau96I GGNCC 4 cut(s) 206, 245, 367, 1070
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 3 cut(s) 24, 313, 1068
SduI GDGCHC 3 cut(s) 639, 1007, 1039
SfaNI GCATC 3 cut(s) 219, 597, 928
SfcI CTRYAG 1 cut(s) 455
SinI GGWCC 2 cut(s) 206, 367
SmiI ATTTAAAT 1 cut(s) 436
Sse9I AATT 9 cut(s) 76, 265, 421, 437, 683, 694, 888, 927, 998
SsiI CCGC 3 cut(s) 296, 399, 415
SspMI CTAG 4 cut(s) 336, 552, 629, 641
SstI GAGCTC 1 cut(s) 639
StyD4I CCNGG 3 cut(s) 22, 311, 1066
StyI CCWWGG 2 cut(s) 149, 954
SwaI ATTTAAAT 1 cut(s) 436
TaaI ACNGT 3 cut(s) 405, 753, 1011
TaiI ACGT 2 cut(s) 124, 144
TaqI TCGA 1 cut(s) 318
TasI AATT 9 cut(s) 76, 265, 421, 437, 683, 694, 888, 927, 998
TatI WGTACW 1 cut(s) 302
Tru1I TTAA 3 cut(s) 74, 435, 758
Tru9I TTAA 3 cut(s) 74, 435, 758
TscAI CASTG 2 cut(s) 758, 922
TseFI GTSAC 2 cut(s) 529, 664
TseI GCWGC 3 cut(s) 112, 488, 700
Tsp45I GTSAC 2 cut(s) 529, 664
TspDTI ATGAA 6 cut(s) 377, 858, 956, 959, 1004, 1008
TspRI CASTG 2 cut(s) 758, 922
Tth111I GACNNNGTC 1 cut(s) 371
Van91I CCANNNNNTGG 1 cut(s) 261
VneI GTGCAC 1 cut(s) 1003
VpaK11BI GGWCC 2 cut(s) 206, 367
XagI CCTNNNNNAGG 1 cut(s) 550
XapI RAATTY 3 cut(s) 265, 437, 694
XmiI GTMKAC 1 cut(s) 1013
XmnI GAANNNNTTC 1 cut(s) 963
XspI CTAG 4 cut(s) 336, 552, 629, 641
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.