Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004489

Physical Location & Seq

Genomic Coordinates Forward (+)

21300539 .. 21300916

Gene Structure 378 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0123300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGATTTGGATATTCTAAGTTGGAATTGCAGGGGGATCTGCAACGATACTACTACGAGGGCATTGAAAGATTTGATATCTCAAAATCGTCCTCAAATTGTTTTTATCTGTGAAACCAAAATCAGTAATCTATCTGATTTCAAAGCATTACACGCTGCTTTAGGGTTTCCTAATTCTCGGGAGGTTCTAAGTGATGGGCGGTCTGGTGGAATAGGAATGTTTTGGAGCGATGACGTGAAAGCGAAGATTGGTACTGTTTCAAACCATCACATGGATCTGTTCATTAATGGTGGGATTGGAAACCCTAGATGGAGAATAACAGGATTTTATGGCTATGCAAGTACGGCTGACCGTGATCGTTTGATAGGAGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3

Protein Analysis

125

Amino Acids

13.85

Weight (kDa)

7.76

Isoelectric Point (pI)

17.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Exo_endo_phos	PF03372	6 - 103	4.4e-08	Endonuclease/Exonuclease/phosphatase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004489)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G04460 AT5G04460 AT5G04460 AT5G04460 AT5G04460 AT5G04460
fragaria_vesca	FvH4_7g06660 FvH4_7g06660 FvH4_7g06660 FvH4_7g06660 FvH4_7g06660 FvH4_7g06660 FvH4_7g06660 FvH4_7g06660
malus_domestica	MD02G1237400.v1.1 MD07G1074600.v1.1
prunus_persica	Prupe.2G094700_v2.0.a1 Prupe.2G094700_v2.0.a1
pyrus_communis	pycom02g20820 pycom07g05860
rosa_chinensis	RchiOBHm_Chr1g0336281
rosa_laevigata	RLG00000029376
rosa_multiflora	Rmu_sc0001453.1_g000003
rosa_roxburghii	Rroxscaffold_4G00315820
rosa_rugosa	Rorug01G0123200 Rorug01G0123300 Rorug01G0123400
rosa_samantha	Rh1AG143900 Rh1BG113500 Rh1CG135600 Rh1DG150500
rosa_wichuraiana	Rw0G015200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	271
AciI	CCGC	1 cut(s)	199
AclWI	GGATC	2 cut(s)	44, 282
AfaI	GTAC	2 cut(s)	253, 343
AfiI	CCNNNNNNNGG	1 cut(s)	271
AgsI	TTSAA	3 cut(s)	67, 142, 261
AjiI	CACGTC	1 cut(s)	235
AlwI	GGATC	2 cut(s)	44, 282
Ama87I	CYCGRG	1 cut(s)	177
ApeKI	GCWGC	1 cut(s)	155
AseI	ATTAAT	1 cut(s)	285
AvaI	CYCGRG	1 cut(s)	177
BbvI	GCAGC	1 cut(s)	142
BccI	CCATC	3 cut(s)	188, 273, 303
BceAI	ACGGC	1 cut(s)	360
BfaI	CTAG	1 cut(s)	306
BisI	GCNGC	1 cut(s)	156
BlsI	GCNGC	1 cut(s)	157
BmeT110I	CYCGRG	1 cut(s)	177
BmgBI	CACGTC	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	1 cut(s)	271
BseLI	CCNNNNNNNGG	1 cut(s)	271
BseXI	GCAGC	1 cut(s)	142
BsiHKCI	CYCGRG	1 cut(s)	177
BslI	CCNNNNNNNGG	1 cut(s)	271
BsoBI	CYCGRG	1 cut(s)	177
Bsp143I	GATC	3 cut(s)	36, 274, 355
BspACI	CCGC	1 cut(s)	199
BspPI	GGATC	2 cut(s)	44, 282
BssMI	GATC	3 cut(s)	36, 274, 355
Bst4CI	ACNGT	2 cut(s)	256, 353
BstDEI	CTNAG	2 cut(s)	17, 188
BstKTI	GATC	3 cut(s)	39, 277, 358
BstMBI	GATC	3 cut(s)	36, 274, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 344
BstV1I	GCAGC	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	36, 274
BstYI	RGATCY	2 cut(s)	36, 274
BtgZI	GCGATG	1 cut(s)	243
BtrI	CACGTC	1 cut(s)	235
Csp6I	GTAC	2 cut(s)	252, 342
CviAII	CATG	1 cut(s)	271
CviJI	RGCY	2 cut(s)	333, 347
CviKI_1	RGCY	2 cut(s)	333, 347
CviQI	GTAC	2 cut(s)	252, 342
DdeI	CTNAG	2 cut(s)	17, 188
DpnI	GATC	3 cut(s)	38, 276, 357
DpnII	GATC	3 cut(s)	36, 274, 355
Eco32I	GATATC	1 cut(s)	78
Eco88I	CYCGRG	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	78
FaeI	CATG	1 cut(s)	274
FaiI	YATR	3 cut(s)	272, 330, 336
FatI	CATG	1 cut(s)	270
Fnu4HI	GCNGC	1 cut(s)	156
Fsp4HI	GCNGC	1 cut(s)	156
FspBI	CTAG	1 cut(s)	306
GluI	GCNGC	1 cut(s)	156
Hin1II	CATG	1 cut(s)	274
Hpy188I	TCNGA	1 cut(s)	136
Hpy188III	TCNNGA	1 cut(s)	179
HpyCH4III	ACNGT	2 cut(s)	256, 353
HpyCH4IV	ACGT	1 cut(s)	234
HpyCH4V	TGCA	3 cut(s)	30, 42, 338
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 344
HpyF3I	CTNAG	2 cut(s)	17, 188
HpySE526I	ACGT	1 cut(s)	234
Hsp92II	CATG	1 cut(s)	274
Kzo9I	GATC	3 cut(s)	36, 274, 355
LmnI	GCTCC	2 cut(s)	225, 368
LpnPI	CCDG	3 cut(s)	16, 189, 306
Lsp1109I	GCAGC	1 cut(s)	142
MaeI	CTAG	1 cut(s)	306
MaeII	ACGT	1 cut(s)	234
MalI	GATC	3 cut(s)	38, 276, 357
MboI	GATC	3 cut(s)	36, 274, 355
MboII	GAAGA	1 cut(s)	256
MflI	RGATCY	2 cut(s)	36, 274
MluCI	AATT	3 cut(s)	25, 96, 172
MnlI	CCTC	3 cut(s)	51, 102, 175
MseI	TTAA	2 cut(s)	285, 376
MwoI	GCNNNNNNNGC	2 cut(s)	152, 344
NdeII	GATC	3 cut(s)	36, 274, 355
NlaIII	CATG	1 cut(s)	274
PflMI	CCANNNNNTGG	1 cut(s)	271
PkrI	GCNGC	1 cut(s)	157
PshBI	ATTAAT	1 cut(s)	285
PsuI	RGATCY	2 cut(s)	36, 274
RsaI	GTAC	2 cut(s)	253, 343
RsaNI	GTAC	2 cut(s)	252, 342
SaqAI	TTAA	2 cut(s)	285, 376
SatI	GCNGC	1 cut(s)	156
Sau3AI	GATC	3 cut(s)	36, 274, 355
SetI	ASST	2 cut(s)	186, 237
Sse9I	AATT	3 cut(s)	25, 96, 172
SsiI	CCGC	1 cut(s)	199
SspMI	CTAG	1 cut(s)	306
TaaI	ACNGT	2 cut(s)	256, 353
TaiI	ACGT	1 cut(s)	237
TasI	AATT	3 cut(s)	25, 96, 172
Tru1I	TTAA	2 cut(s)	285, 376
Tru9I	TTAA	2 cut(s)	285, 376
TseI	GCWGC	1 cut(s)	155
TspDTI	ATGAA	1 cut(s)	271
Van91I	CCANNNNNTGG	1 cut(s)	271
VspI	ATTAAT	1 cut(s)	285
XspI	CTAG	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.