Rh1CG135600

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0004489
Physical Location & Seq
Forward (+)
29739031 .. 29745105
6075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG135600.1

Sequence Viewer

Length: 2469 bp
ATGACGGACTTTGAGCCGCTGCAACAGAAGCCGGAATCGGCCGATGCCTGCGGTGATTTCGAGACTGGATATGAGGAATTCATGCGTGGGCACTTGGATGAATGTATGTCGTTTGCTTCATGTAGCTCTCCGCGGAATCCTGATGATGAGGACGATGAGGGTGAGCAGCTTGTTCGGAGGAGACGGAGGTTGGATTTGGAGGGGCATGATTTGGCCGAGTCGTCTGCTGCTGCGCGGCGCCACCACTCCCGGATTTTGACCAGTTGGGCGGCGCGGCAGGCGCAGGAGATGATTACCACCATTGAGAGGAGGAATCGGGAGTCGGAGCTGATGGCGCTTGCGGGGTTGCATACGGTTTCGATGCTCGACTCCTCCTTCTTGAGGGAGTCACAGTCCCCGACGTCGAGGCGGCAGGGGACTGTCGAGAGGCCGAGCACTCAGGCGTCTGCAATTTTGCAAATGTGGCGGGAGCTGGAGGATGAGCATTTGTTGAATAGAGCACGTGGGAGGGTGAGGGAAAGGTTGAGGCAGCAGAGGAATGTTGAGTCTAATACTAATGAGTTGAACACAAATAGATCTGATAGTCGGGGGAGTGAGAATCCTGGGAGTTTGGTGGATGCGAGTGAGAGTGAAAATGAGTATGGGACGTGGTCACATGATCAGATGGGTTCACCAAACGAACGAGGTGATAATAATGCATCTAGCAGGGAGCAATCTCCCGATCTTGGCGACGTTGAGAGGGAGAGAGTGAGGCAGATTGTACGGGGATGGATGGAAACTGGCATTACTGATCATTCATCCAATGTTGCTCCAAGAAATAGTAGTCCTAGGGCAGAGTGGCTTGGTGAGACGGAGCGGGAAAGGGTGAGAATCGTCCGGGAGTGGGTGCAAATGGCTAGTCAGCAGAGAGGAGGTCGTGGAGGCCGACGGGAAGATCACGTCACCAATGGTGGTGCTCAAGTTGGTATAGTGCGTGATGAGTCAGCTGCTGACCAAGAAGAGAGCCAACCAGAGCACATTCGCCGGGATATGTTGAGGTTGCGTGGAAGACAAGCTATAATTGATTTGCTTGTGAGAATTGAGAGGGAAAGACAAAGGGAGCTCCAGTCTTTGGTGGAGCATCGAGCTGTCTCTGATTTTGCTCATCGCAACCGCATTCAGTCATTACTCAGAGGTAGATTCTTGCGAAATGAAAGGCCTATTGAAGAAGAAAGACCACCTTCTATAGCCGCGGGTGAATTAGTCCAATTGAGGCAGAGACACACTGTTTCTGGTTTAAGGGAAGGGTTCCGCTCCAGATTAGAAACTATAGTTCGTGGTCAAGTTGACGGCAATAATGATTCTCCAACTAACAGTAATGTTAATGATTCTAGAAGCGATCATACCCAAACAATCGCTTCTCAGGATATTCAGCAGGAAAACCGTGAGCAATCCCAGCCTGGGAGCGAGGGAGGTGACAATCAGTTCCCTAATCAATTGGGGAACTTGGAAAATGACACAGCTGTCGAGCGACTTGATTGGCAAGAAACTGCTAATCAAGGTGGGAATTGGCAGGAACCAATTGCTGAAGATGAGAGACGTAACTGGGAGCAGACAACTTTTGATCAATTTAACGATTGGAGGGAAGGTAATGCTGAAGATATAGTTGGAAATTGGCAAGAAAGTTCTGTCAATAATTGGCCTCAGGGAACTGCGCGAAATGCTGTTGAAGAAACAGGTCATCAACAAGAAGCTCAGGGTACATGGCGTGAGAATAGTTCTCGGGAAGCTGTTGAGAATTGGTCAGAAAGACCTTCAGGTCCTGTGAGAAATCGTCGTTCTGGCTCAGTTAGAAGATTCAATAGATTTAGTCCACCAGATGATGATACCGTGTACAGTATGGAACTCAGGGAACTTCTGAGCAGGAGAAGTGTTTCGAATCTTCTTCGTAGTGGATTTCGTGAAAGTCTGGACCAGCTGATACAATCATATGTTGAAAGGCAAAGTCGTGCTCCCATTGATTGGGATTTGCATAGAAACTTGCCAACACCAACTCCGGCTTCACCAGTGCAGGACCAGGACCGACAGAGGGATGAGCTGAATGAAGATCAGCATGATGCCATCAACAGACCTTCACGTGTTCTACCATCTCCACCAGTTCCCCCACCACAACCATTATGGCATCAGGACTTGCATAACACTGGCTGGTCTCGCCATAGCATGCATCGTTCAGAAATTGTGAGCCTTCTTTCTTCCCTGAATTTTGGATTTGATATCACTTTTTCTTCACACCAAAAACTAAGATATAAAAGAAAAGAAAAAAAATATTCCATTTGTACTTTAATGGATCTTATGAAAATTTTTTCATGCAACTTCCAAACAATTTCATTCTACATTTTGGATTTTGAGGTCTTATCACCAAGATTTAATGAAACTTCACCATTTTTCCAGTACTTAACATATTTTGGCCCAATATGTTGGATTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

822

Amino Acids

95.02

Weight (kDa)

5.43

Isoelectric Point (pI)

67.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1502, 1797
AatII GACGTC 1 cut(s) 404
AccB1I GGYRCC 1 cut(s) 237
AccB7I CCANNNNNTGG 2 cut(s) 1111, 2001
AccBSI CCGCTC 2 cut(s) 856, 1293
AccII CGCG 5 cut(s) 133, 235, 274, 1232, 1696
AclWI GGATC 1 cut(s) 2334
AcoI YGGCCR 2 cut(s) 39, 213
AcsI RAATTY 3 cut(s) 77, 2239, 2337
AcuI CTGAAG 3 cut(s) 1587, 1656, 1779
AcvI CACGTG 2 cut(s) 503, 2117
AcyI GRCGYC 3 cut(s) 238, 401, 443
AfaI GTAC 5 cut(s) 762, 1741, 1874, 2317, 2432
AfiI CCNNNNNNNGG 8 cut(s) 306, 381, 725, 883, 1111, 1440, 2001, 2068
AflIII ACRYGT 1 cut(s) 2116
AgsI TTSAA 6 cut(s) 493, 565, 1205, 1709, 1840, 1976
AjiI CACGTC 2 cut(s) 648, 940
AjnI CCWGG 3 cut(s) 601, 1438, 2055
AjuI GAANNNNNNNTTGG 4 cut(s) 1629, 1661, 2023, 2055
Alw21I GWGCWC 6 cut(s) 437, 502, 958, 1017, 1104, 1993
Alw26I GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 2193
AlwI GGATC 1 cut(s) 2334
AlwNI CAGNNNCTG 2 cut(s) 989, 1802
Ama87I CYCGRG 1 cut(s) 1761
AoxI GGCC 7 cut(s) 39, 213, 428, 922, 1196, 1679, 2446
ApeKI GCWGC 6 cut(s) 19, 166, 227, 230, 529, 986
ApoI RAATTY 3 cut(s) 77, 2239, 2337
ArsI GACNNNNNNTTYG 2 cut(s) 883, 915
Asp700I GAANNNNTTC 1 cut(s) 1912
AspA2I CCTAGG 1 cut(s) 827
AspLEI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
AspS9I GGNCC 5 cut(s) 1799, 1951, 2053, 2059, 2447
AsuC2I CCSGG 3 cut(s) 250, 878, 1025
AsuII TTCGAA 1 cut(s) 1916
AvaI CYCGRG 1 cut(s) 1761
AvaII GGWCC 4 cut(s) 1799, 1951, 2053, 2059
AvrII CCTAGG 1 cut(s) 827
AxyI CCTNAGG 1 cut(s) 1683
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 1104
BarI GAAGNNNNNNTAC 2 cut(s) 1366, 1398
BbrPI CACGTG 2 cut(s) 503, 2117
BbsI GAAGAC 1 cut(s) 1054
Bbv12I GWGCWC 6 cut(s) 437, 502, 958, 1017, 1104, 1993
BbvI GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
BccI CCATC 6 cut(s) 325, 658, 762, 766, 2108, 2134
BceAI ACGGC 1 cut(s) 1345
BcgI CGANNNNNNTGC 4 cut(s) 155, 189, 206, 240
BciT130I CCWGG 3 cut(s) 603, 1440, 2057
BclI TGATCA 3 cut(s) 658, 790, 1603
BcnI CCSGG 3 cut(s) 250, 878, 1025
BcoDI GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 2193
BfaI CTAG 5 cut(s) 702, 828, 897, 1371, 2467
BfmI CTRYAG 2 cut(s) 1224, 1308
BfoI RGCGCY 2 cut(s) 241, 338
BglII AGATCT 1 cut(s) 575
BlnI CCTAGG 1 cut(s) 827
BmcAI AGTACT 1 cut(s) 2432
Bme1390I CCNGG 6 cut(s) 250, 603, 878, 1025, 1440, 2057
Bme18I GGWCC 4 cut(s) 1799, 1951, 2053, 2059
BmeT110I CYCGRG 1 cut(s) 1761
BmgBI CACGTC 2 cut(s) 648, 940
BmgT120I GGNCC 5 cut(s) 1799, 1951, 2053, 2059, 2447
BmiI GGNNCC 3 cut(s) 239, 1289, 1557
BmrFI CCNGG 6 cut(s) 250, 603, 878, 1025, 1440, 2057
BmrI ACTGGG 1 cut(s) 1594
BmsI GCATC 8 cut(s) 34, 351, 607, 707, 1129, 2086, 2170, 2212
BmuI ACTGGG 1 cut(s) 1594
BpiI GAAGAC 1 cut(s) 1054
BpmI CTGGAG 3 cut(s) 494, 1088, 1279
Bpu10I CCTNAGC 1 cut(s) 1734
Bpu14I TTCGAA 1 cut(s) 1916
BpuEI CTTGAG 2 cut(s) 400, 942
BpuMI CCSGG 3 cut(s) 250, 878, 1025
BsaAI YACGTR 2 cut(s) 503, 2117
BsaHI GRCGYC 3 cut(s) 238, 401, 443
BsaI GGTCTC 1 cut(s) 2193
BsaJI CCNNGG 5 cut(s) 131, 602, 827, 1230, 1439
BsaXI ACNNNNNCTCC 8 cut(s) 377, 407, 1091, 1121, 1612, 1642, 2017, 2047
Bsc4I CCNNNNNNNGG 8 cut(s) 306, 381, 725, 883, 1111, 1440, 2001, 2068
Bse1I ACTGG 9 cut(s) 70, 261, 784, 1105, 1589, 2045, 2135, 2185, 2428
Bse21I CCTNAGG 1 cut(s) 1683
BseBI CCWGG 3 cut(s) 603, 1440, 2057
BseDI CCNNGG 5 cut(s) 131, 602, 827, 1230, 1439
BseGI GGATG 7 cut(s) 103, 484, 622, 773, 777, 797, 2077
BseLI CCNNNNNNNGG 8 cut(s) 306, 381, 725, 883, 1111, 1440, 2001, 2068
BseMII CTCAG 8 cut(s) 452, 1183, 1415, 1697, 1748, 1839, 1889, 1900
BseNI ACTGG 9 cut(s) 70, 261, 784, 1105, 1589, 2045, 2135, 2185, 2428
BseRI GAGGAG 4 cut(s) 193, 322, 361, 924
BseSI GKGCMC 1 cut(s) 93
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
BseYI CCCAGC 1 cut(s) 1434
BsgI GTGCAG 1 cut(s) 2069
Bsh1236I CGCG 5 cut(s) 133, 235, 274, 1232, 1696
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 7 cut(s) 41, 215, 430, 924, 1198, 1681, 2448
BshNI GGYRCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 6 cut(s) 437, 502, 958, 1017, 1104, 1993
BsiHKCI CYCGRG 1 cut(s) 1761
BsiSI CCGG 5 cut(s) 32, 250, 877, 1024, 2036
BslFI GGGAC 3 cut(s) 379, 430, 658
BslI CCNNNNNNNGG 8 cut(s) 306, 381, 725, 883, 1111, 1440, 2001, 2068
BsmAI GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 2193
BsmBI CGTCTC 3 cut(s) 175, 842, 1570
BsmFI GGGAC 3 cut(s) 379, 430, 658
BsmI GAATGC 1 cut(s) 1155
BsnI GGCC 7 cut(s) 41, 215, 430, 924, 1198, 1681, 2448
Bso31I GGTCTC 1 cut(s) 2193
BsoBI CYCGRG 1 cut(s) 1761
Bsp119I TTCGAA 1 cut(s) 1916
Bsp1286I GDGCHC 7 cut(s) 93, 437, 502, 958, 1017, 1104, 1993
Bsp1407I TGTACA 1 cut(s) 1872
Bsp143I GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
BspANI GGCC 7 cut(s) 41, 215, 430, 924, 1198, 1681, 2448
BspCNI CTCAG 8 cut(s) 451, 1182, 1414, 1696, 1747, 1838, 1890, 1899
BspFNI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
BspLI GGNNCC 3 cut(s) 239, 1289, 1557
BspPI GGATC 1 cut(s) 2334
BspT104I TTCGAA 1 cut(s) 1916
BspT107I GGYRCC 1 cut(s) 237
BspTNI GGTCTC 1 cut(s) 2193
BsrBI CCGCTC 2 cut(s) 856, 1293
BsrGI TGTACA 1 cut(s) 1872
BsrI ACTGG 9 cut(s) 70, 261, 784, 1105, 1589, 2045, 2135, 2185, 2428
BssECI CCNNGG 5 cut(s) 131, 602, 827, 1230, 1439
BssMI GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
BssNI GRCGYC 3 cut(s) 238, 401, 443
BssT1I CCWWGG 1 cut(s) 827
Bst2UI CCWGG 3 cut(s) 603, 1440, 2057
Bst4CI ACNGT 8 cut(s) 355, 393, 421, 1267, 1355, 1424, 1870, 1877
Bst6I CTCTTC 1 cut(s) 993
BstACI GRCGYC 3 cut(s) 238, 401, 443
BstAUI TGTACA 1 cut(s) 1872
BstBAI YACGTR 2 cut(s) 503, 2117
BstBI TTCGAA 1 cut(s) 1916
BstC8I GCNNGC 4 cut(s) 49, 279, 339, 2201
BstDEI CTNAG 9 cut(s) 438, 1169, 1401, 1683, 1734, 1825, 1886, 1898, 2279
BstDSI CCRYGG 2 cut(s) 131, 1230
BstENI CCTNNNNNAGG 1 cut(s) 379
BstF5I GGATG 7 cut(s) 103, 484, 622, 773, 777, 797, 2077
BstFNI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
BstH2I RGCGCY 2 cut(s) 241, 338
BstHHI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
BstKTI GATC 9 cut(s) 578, 661, 724, 793, 937, 1381, 1606, 2089, 2329
BstMAI GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 2193
BstMBI GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 8 cut(s) 28, 278, 280, 334, 463, 1435, 1700, 2190
BstNI CCWGG 3 cut(s) 603, 1440, 2057
BstNSI RCATGY 1 cut(s) 2203
BstSCI CCNGG 6 cut(s) 248, 601, 876, 1023, 1438, 2055
BstSFI CTRYAG 2 cut(s) 1224, 1308
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
BstV1I GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
BstV2I GAAGAC 1 cut(s) 1054
BstX2I RGATCY 2 cut(s) 575, 2326
BstXI CCANNNNNNTGG 1 cut(s) 2457
BstYI RGATCY 2 cut(s) 575, 2326
BstZI CGGCCG 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 1683
BsuRI GGCC 7 cut(s) 41, 215, 430, 924, 1198, 1681, 2448
BtgI CCRYGG 2 cut(s) 131, 1230
BtgZI GCGATG 1 cut(s) 1130
BtrI CACGTC 2 cut(s) 648, 940
BtsCI GGATG 7 cut(s) 103, 484, 622, 773, 777, 797, 2077
BtsIMutI CAGTG 3 cut(s) 1263, 2052, 2178
Cac8I GCNNGC 4 cut(s) 49, 279, 339, 2201
CaiI CAGNNNCTG 2 cut(s) 989, 1802
CfoI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
Cfr13I GGNCC 5 cut(s) 1799, 1951, 2053, 2059, 2447
Cfr42I CCGCGG 2 cut(s) 134, 1233
CseI GACGC 1 cut(s) 432
Csp6I GTAC 5 cut(s) 761, 1740, 1873, 2316, 2431
CviAII CATG 8 cut(s) 82, 120, 206, 656, 1743, 2093, 2200, 2346
CviQI GTAC 5 cut(s) 761, 1740, 1873, 2316, 2431
DdeI CTNAG 9 cut(s) 438, 1169, 1401, 1683, 1734, 1825, 1886, 1898, 2279
DinI GGCGCC 1 cut(s) 239
DpnI GATC 9 cut(s) 577, 660, 723, 792, 936, 1380, 1605, 2088, 2328
DpnII GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
DrdI GACNNNNNNGTC 2 cut(s) 1502, 1797
DseDI GACNNNNNNGTC 2 cut(s) 1502, 1797
EaeI YGGCCR 2 cut(s) 39, 213
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
Ecl136II GAGCTC 1 cut(s) 1102
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 827
Eco147I AGGCCT 1 cut(s) 1198
Eco24I GRGCYC 1 cut(s) 1104
Eco31I GGTCTC 1 cut(s) 2193
Eco32I GATATC 1 cut(s) 2254
Eco47I GGWCC 4 cut(s) 1799, 1951, 2053, 2059
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 1102
Eco57I CTGAAG 3 cut(s) 1587, 1656, 1779
Eco72I CACGTG 2 cut(s) 503, 2117
Eco81I CCTNAGG 1 cut(s) 1683
Eco88I CYCGRG 1 cut(s) 1761
EcoICRI GAGCTC 1 cut(s) 1102
EcoNI CCTNNNNNAGG 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 1799
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 3 cut(s) 601, 1438, 2055
EcoRV GATATC 1 cut(s) 2254
EcoT14I CCWWGG 1 cut(s) 827
EcoT22I ATGCAT 2 cut(s) 700, 2205
EcoT38I GRGCYC 1 cut(s) 1104
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 827
Esp3I CGTCTC 3 cut(s) 175, 842, 1570
FaeI CATG 8 cut(s) 85, 123, 209, 659, 1746, 2096, 2203, 2349
FalI AAGNNNNNCTT 2 cut(s) 1204, 1236
FaqI GGGAC 3 cut(s) 379, 430, 658
FatI CATG 8 cut(s) 81, 119, 205, 655, 1742, 2092, 2199, 2345
FauI CCCGC 4 cut(s) 334, 459, 849, 1225
FauNDI CATATG 1 cut(s) 1969
FbaI TGATCA 3 cut(s) 658, 790, 1603
FokI GGATG 7 cut(s) 110, 491, 629, 780, 784, 784, 2084
FriOI GRGCYC 1 cut(s) 1104
FspBI CTAG 5 cut(s) 702, 828, 897, 1371, 2467
GlaI GCGC 6 cut(s) 234, 239, 273, 282, 336, 1695
GsaI CCCAGC 1 cut(s) 1438
GsuI CTGGAG 3 cut(s) 494, 1088, 1279
HaeII RGCGCY 2 cut(s) 241, 338
HaeIII GGCC 7 cut(s) 41, 215, 430, 924, 1198, 1681, 2448
HapII CCGG 5 cut(s) 32, 250, 877, 1024, 2036
HgaI GACGC 1 cut(s) 432
HhaI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
Hin1I GRCGYC 3 cut(s) 238, 401, 443
Hin1II CATG 8 cut(s) 85, 123, 209, 659, 1746, 2096, 2203, 2349
Hin6I GCGC 6 cut(s) 233, 238, 272, 281, 335, 1694
HinP1I GCGC 6 cut(s) 233, 238, 272, 281, 335, 1694
HincII GTYRAC 1 cut(s) 1327
HindII GTYRAC 1 cut(s) 1327
HpaII CCGG 5 cut(s) 32, 250, 877, 1024, 2036
Hpy166II GTNNAC 4 cut(s) 671, 1327, 1853, 1873
Hpy188I TCNGA 9 cut(s) 177, 325, 580, 663, 1135, 1172, 1786, 1899, 2212
Hpy8I GTNNAC 4 cut(s) 671, 1327, 1853, 1873
Hpy99I CGWCG 5 cut(s) 403, 406, 734, 930, 1818
HpyAV CCTTC 7 cut(s) 385, 1230, 1277, 1619, 1803, 2121, 2234
HpyCH4III ACNGT 8 cut(s) 355, 393, 421, 1267, 1355, 1424, 1870, 1877
HpyCH4IV ACGT 7 cut(s) 401, 502, 647, 732, 939, 1579, 2116
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 278, 280, 334, 463, 1435, 1700, 2190
HpyF3I CTNAG 9 cut(s) 438, 1169, 1401, 1683, 1734, 1825, 1886, 1898, 2279
HpySE526I ACGT 7 cut(s) 401, 502, 647, 732, 939, 1579, 2116
Hsp92I GRCGYC 3 cut(s) 238, 401, 443
Hsp92II CATG 8 cut(s) 85, 123, 209, 659, 1746, 2096, 2203, 2349
HspAI GCGC 6 cut(s) 233, 238, 272, 281, 335, 1694
KasI GGCGCC 1 cut(s) 237
Ksp22I TGATCA 3 cut(s) 658, 790, 1603
KspI CCGCGG 2 cut(s) 134, 1233
Kzo9I GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
Lsp1109I GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
LweI GCATC 8 cut(s) 34, 351, 607, 707, 1129, 2086, 2170, 2212
MaeI CTAG 5 cut(s) 702, 828, 897, 1371, 2467
MaeII ACGT 7 cut(s) 401, 502, 647, 732, 939, 1579, 2116
MaeIII GTNAC 5 cut(s) 387, 651, 940, 1454, 1580
MalI GATC 9 cut(s) 577, 660, 723, 792, 936, 1380, 1605, 2088, 2328
MbiI CCGCTC 2 cut(s) 856, 1293
MboI GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
MfeI CAATTG 3 cut(s) 1247, 1475, 1560
MflI RGATCY 2 cut(s) 575, 2326
MhlI GDGCHC 7 cut(s) 93, 437, 502, 958, 1017, 1104, 1993
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 6 cut(s) 227, 329, 362, 395, 554, 989
MmeI TCCRAC 5 cut(s) 171, 303, 1370, 1627, 2438
Mph1103I ATGCAT 2 cut(s) 700, 2205
MroXI GAANNNNTTC 1 cut(s) 1912
MseI TTAA 6 cut(s) 1277, 1362, 1611, 2321, 2406, 2435
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 6 cut(s) 19, 133, 986, 1232, 1502, 1957
MspI CCGG 5 cut(s) 32, 250, 877, 1024, 2036
MspR9I CCNGG 6 cut(s) 250, 603, 878, 1025, 1440, 2057
MteI GCGCNGCGC 1 cut(s) 236
MunI CAATTG 3 cut(s) 1247, 1475, 1560
Mva1269I GAATGC 1 cut(s) 1155
MvaI CCWGG 3 cut(s) 603, 1440, 2057
MvnI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
MwoI GCNNNNNNNGC 8 cut(s) 28, 278, 280, 334, 463, 1435, 1700, 2190
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 3 cut(s) 250, 878, 1025
NdeI CATATG 1 cut(s) 1969
NdeII GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
NlaIII CATG 8 cut(s) 85, 123, 209, 659, 1746, 2096, 2203, 2349
NlaIV GGNNCC 3 cut(s) 239, 1289, 1557
NmeAIII GCCGAG 2 cut(s) 241, 456
NmuCI GTSAC 4 cut(s) 387, 651, 940, 1454
NsiI ATGCAT 2 cut(s) 700, 2205
NspI RCATGY 1 cut(s) 2203
NspV TTCGAA 1 cut(s) 1916
PaeI GCATGC 1 cut(s) 2203
PceI AGGCCT 1 cut(s) 1198
PcsI WCGNNNNNNNCGW 1 cut(s) 922
PctI GAATGC 1 cut(s) 1155
PdmI GAANNNNTTC 1 cut(s) 1912
PflFI GACNNNGTC 1 cut(s) 649
PflMI CCANNNNNTGG 2 cut(s) 1111, 2001
PfoI TCCNGGA 2 cut(s) 248, 876
PleI GAGTC 6 cut(s) 226, 328, 362, 394, 553, 988
PluTI GGCGCC 1 cut(s) 241
PmaCI CACGTG 2 cut(s) 503, 2117
PmlI CACGTG 2 cut(s) 503, 2117
PpsI GAGTC 6 cut(s) 226, 328, 362, 394, 553, 988
Ppu21I YACGTR 2 cut(s) 503, 2117
PpuMI RGGWCCY 1 cut(s) 1799
Psp124BI GAGCTC 1 cut(s) 1104
Psp5II RGGWCCY 1 cut(s) 1799
Psp6I CCWGG 3 cut(s) 601, 1438, 2055
PspCI CACGTG 2 cut(s) 503, 2117
PspFI CCCAGC 1 cut(s) 1434
PspGI CCWGG 3 cut(s) 601, 1438, 2055
PspN4I GGNNCC 3 cut(s) 239, 1289, 1557
PspPI GGNCC 5 cut(s) 1799, 1951, 2053, 2059, 2447
PspPPI RGGWCCY 1 cut(s) 1799
PstNI CAGNNNCTG 2 cut(s) 989, 1802
PsuI RGATCY 2 cut(s) 575, 2326
PsyI GACNNNGTC 1 cut(s) 649
PvuII CAGCTG 3 cut(s) 986, 1502, 1957
RsaI GTAC 5 cut(s) 762, 1741, 1874, 2317, 2432
RsaNI GTAC 5 cut(s) 761, 1740, 1873, 2316, 2431
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 1104
SacII CCGCGG 2 cut(s) 134, 1233
SaqAI TTAA 6 cut(s) 1277, 1362, 1611, 2321, 2406, 2435
Sau3AI GATC 9 cut(s) 575, 658, 721, 790, 934, 1378, 1603, 2086, 2326
Sau96I GGNCC 5 cut(s) 1799, 1951, 2053, 2059, 2447
ScaI AGTACT 1 cut(s) 2432
SchI GAGTC 6 cut(s) 227, 329, 362, 395, 554, 989
ScrFI CCNGG 6 cut(s) 250, 603, 878, 1025, 1440, 2057
SduI GDGCHC 7 cut(s) 93, 437, 502, 958, 1017, 1104, 1993
SfaNI GCATC 8 cut(s) 34, 351, 607, 707, 1129, 2086, 2170, 2212
SfcI CTRYAG 2 cut(s) 1224, 1308
SfoI GGCGCC 1 cut(s) 239
Sfr303I CCGCGG 2 cut(s) 134, 1233
SfuI TTCGAA 1 cut(s) 1916
SgrBI CCGCGG 2 cut(s) 134, 1233
SinI GGWCC 4 cut(s) 1799, 1951, 2053, 2059
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 379, 957
SmoI CTYRAG 2 cut(s) 379, 957
SphI GCATGC 1 cut(s) 2203
SseBI AGGCCT 1 cut(s) 1198
SspDI GGCGCC 1 cut(s) 237
SspI AATATT 1 cut(s) 2306
SspMI CTAG 5 cut(s) 702, 828, 897, 1371, 2467
SstI GAGCTC 1 cut(s) 1104
StuI AGGCCT 1 cut(s) 1198
StyD4I CCNGG 6 cut(s) 248, 601, 876, 1023, 1438, 2055
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 8 cut(s) 355, 393, 421, 1267, 1355, 1424, 1870, 1877
TaiI ACGT 7 cut(s) 404, 505, 650, 735, 942, 1582, 2119
TaqI TCGA 8 cut(s) 60, 359, 366, 404, 423, 1123, 1506, 1916
TaqII GACCGA 1 cut(s) 2076
TatI WGTACW 3 cut(s) 1872, 2315, 2430
TauI GCSGC 6 cut(s) 19, 238, 272, 277, 412, 1232
Tru1I TTAA 6 cut(s) 1277, 1362, 1611, 2321, 2406, 2435
Tru9I TTAA 6 cut(s) 1277, 1362, 1611, 2321, 2406, 2435
TscAI CASTG 3 cut(s) 1270, 2052, 2185
TseFI GTSAC 4 cut(s) 387, 651, 940, 1454
TseI GCWGC 6 cut(s) 19, 166, 227, 230, 529, 986
Tsp45I GTSAC 4 cut(s) 387, 651, 940, 1454
TspGWI ACGGA 3 cut(s) 20, 199, 866
TspRI CASTG 3 cut(s) 1270, 2052, 2185
Tth111I GACNNNGTC 1 cut(s) 649
Van91I CCANNNNNTGG 2 cut(s) 1111, 2001
VpaK11BI GGWCC 4 cut(s) 1799, 1951, 2053, 2059
XagI CCTNNNNNAGG 1 cut(s) 379
XapI RAATTY 3 cut(s) 77, 2239, 2337
XbaI TCTAGA 1 cut(s) 1370
XceI RCATGY 1 cut(s) 2203
XcmI CCANNNNNNNNNTGG 1 cut(s) 2154
XmaJI CCTAGG 1 cut(s) 827
XmnI GAANNNNTTC 1 cut(s) 1912
XspI CTAG 5 cut(s) 702, 828, 897, 1371, 2467
ZraI GACGTC 1 cut(s) 402
ZrmI AGTACT 1 cut(s) 2432
Zsp2I ATGCAT 2 cut(s) 700, 2205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.