Rh1AG143900

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0004489
Physical Location & Seq
Forward (+)
27239965 .. 27246039
6075 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG143900.1

Sequence Viewer

Length: 1956 bp
ATGACGGACTTTGAGCCGCTGCAACAGAAGCCGGAATCGGCCGATGCCTGCGGTGATTTCGAGACTGGATATGAGGAATTCATGCGTGGGCACTTGGATGAATGTATGTCGTTTGCTTCATGTAGCTCTCCGCGGAATCCTGATGATGAGGACGATGAGGGTGAGCAGCTTGTTCGGAGGAGACGGAGGTTGGATTTGGAGGGGCATGATTTGGCCGAGTCGTCTGCTGCTGCGCGGCGCCACCACTCCCGGATTTTGACCAGTTGGGCGGCGCGGCAGGCGCAGGAGATGATTACCACCATTGAGAGGAGGAATCGGGAGTCGGAGCTGATGGCGCTTGCGGGGTTGCATACGGTTTCGATGCTCGACTCCTCCTTCTTGAGGGAGTCACAGTCCCCGACGTCGAGGCGGCAGGGGACTGTCGAGAGGCCGAGCACTCAGGCGTCTGCAATTTTGCAAATGTGGCGGGAGCTGGAGGATGAGCATTTGTTGAATAGAGCACGTGGGAGGGTGAGGGAAAGGTTGAGGCAGCAGAGGAATGTTGAGTCTAATACTAATGAGTTGAACACAAATAGATCTGATAGTCGGGGGAGTGAGAATCCTGGGAGTTTGGTGGATGCGAGTGAGAGTGAAAATGAGTATGGGACGTGGTCACATGATCAGATGGGTTCACCAAACGAACGAGGTGATAATAATGCATCTAGCAGGGAGCAATCTCCCGATCTTGGCGACGTTGAGAGGGAGAGAGTGAGGCAGATTGTACGGGGATGGATGGAAACTGGCATTACTGATCATTCATCCAATGTTGCTCCAAGAAATAGTAGTCCTAGGGCAGAGTGGCTTGGTGAGACGGAGCGGGAAAGGGTGAGAATCGTCCGGGAGTGGGTGCAAATGGCTAGTCAGCAGAGAGGAGGTCGTGGAGGCCGACGGGAAGATCACGTCACCAATGGTGGTGCTCAAGTTGGTATAGTGCGTGATGAGTCAGCTGCTGACCAAGAAGAGAGCCAACCAGAGCACATTCGCCGGGATATGTTGAGGTTGCGTGGAAGACAAGCTATAATTGATTTGCTTGTGAGAATTGAGAGGGAAAGACAAAGGGAGCTCCAGTCTTTGGTGGAGCATCGAGCTGTCTCTGATTTTGCTCATCGCAACCGCATTCAGTCATTACTCAGAGGTAGATTCTTGCGAAATGAAAGGCCTATTGAAGAAGAAAGACCACCTTCTATAGCCGCGGGTGAATTAGTCCAATTGAGGCAGAGACACACTGTTTCTGGTTTAAGGGAAGGGTTCCGCTCCAGATTAGAAACTATAGTTCGTGGTCAAGTTGACGGCAATAATGATTCTCCAACTAACAGTAATGTTAATGATTCTAGAAGCGATCATACCCAAACAATCGCTTCTCAGGATATTCAGCAGGAAAACCGTGAGCAATCCCAGCCTGGGAGCGAGGGAGGTGACAATCAGTTCCCTAATCAATTGGGGAACTTGGAAAATGACACAGCTGTCGAGCGACTTGATTGGCAAGAAACTGCTAATCAAGGTGGGAATTGGCAGGAACCAATTGCTGAAGATGAGAGACGTAACTGGGAGCAGACAACTTTTGATCAATTTAACGATTGGAGGGAAGGTAATGCTGAAGATATAGTTGGAAATTGGCAAGAAAGTTCTGTCAATAATTGGCCTCAGGGAACTGCGCGAAATGCTGTTGAAGAAACAGGTCATCAACAAGAAGCTCAGGGTACATGGCGTGAGAATAGTTCTCGGGAAGCTGTTGAGAATTGGTCAGAAAGACCTTCAGGTCCTGTGAGAAATCGTCGTTCTGGCTCAGTTAGAAGATTCAATAGATTTAGTCCACCAGATGATGATACCGTGTACAGTATGGAACTCAGGGAACTTCTGAGCAGGTATTTGTTCAAATGTAGAACGAGTGGGTTGAGAGAGACATGGATTTCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

651

Amino Acids

74.88

Weight (kDa)

5.23

Isoelectric Point (pI)

61.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 1502, 1797
AatII GACGTC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 1893
AccB1I GGYRCC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 1111
AccBSI CCGCTC 2 cut(s) 856, 1293
AccII CGCG 5 cut(s) 133, 235, 274, 1232, 1696
AcoI YGGCCR 2 cut(s) 39, 213
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 3 cut(s) 1587, 1656, 1779
AcvI CACGTG 1 cut(s) 503
AcyI GRCGYC 3 cut(s) 238, 401, 443
AfaI GTAC 3 cut(s) 762, 1741, 1874
AfiI CCNNNNNNNGG 6 cut(s) 306, 381, 725, 883, 1111, 1440
AgsI TTSAA 6 cut(s) 493, 565, 1205, 1709, 1840, 1915
AjiI CACGTC 2 cut(s) 648, 940
AjnI CCWGG 2 cut(s) 601, 1438
AjuI GAANNNNNNNTTGG 2 cut(s) 1629, 1661
Alw21I GWGCWC 5 cut(s) 437, 502, 958, 1017, 1104
Alw26I GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 1934
AlwNI CAGNNNCTG 2 cut(s) 989, 1802
Ama87I CYCGRG 1 cut(s) 1761
AoxI GGCC 6 cut(s) 39, 213, 428, 922, 1196, 1679
ApeKI GCWGC 6 cut(s) 19, 166, 227, 230, 529, 986
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 883, 915
AspA2I CCTAGG 1 cut(s) 827
AspLEI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
AspS9I GGNCC 1 cut(s) 1799
AsuC2I CCSGG 3 cut(s) 250, 878, 1025
AvaI CYCGRG 1 cut(s) 1761
AvaII GGWCC 1 cut(s) 1799
AvrII CCTAGG 1 cut(s) 827
AxyI CCTNAGG 1 cut(s) 1683
BaeGI GKGCMC 1 cut(s) 93
BanI GGYRCC 1 cut(s) 237
BanII GRGCYC 1 cut(s) 1104
BarI GAAGNNNNNNTAC 2 cut(s) 1366, 1398
BbrPI CACGTG 1 cut(s) 503
BbsI GAAGAC 1 cut(s) 1054
Bbv12I GWGCWC 5 cut(s) 437, 502, 958, 1017, 1104
BbvI GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
BccI CCATC 4 cut(s) 325, 658, 762, 766
BceAI ACGGC 1 cut(s) 1345
BcgI CGANNNNNNTGC 4 cut(s) 155, 189, 206, 240
BciT130I CCWGG 2 cut(s) 603, 1440
BclI TGATCA 3 cut(s) 658, 790, 1603
BcnI CCSGG 3 cut(s) 250, 878, 1025
BcoDI GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 1934
BfaI CTAG 4 cut(s) 702, 828, 897, 1371
BfmI CTRYAG 2 cut(s) 1224, 1308
BfoI RGCGCY 2 cut(s) 241, 338
BfuAI ACCTGC 1 cut(s) 1893
BglII AGATCT 1 cut(s) 575
BlnI CCTAGG 1 cut(s) 827
Bme1390I CCNGG 5 cut(s) 250, 603, 878, 1025, 1440
Bme18I GGWCC 1 cut(s) 1799
BmeT110I CYCGRG 1 cut(s) 1761
BmgBI CACGTC 2 cut(s) 648, 940
BmgT120I GGNCC 1 cut(s) 1799
BmiI GGNNCC 3 cut(s) 239, 1289, 1557
BmrFI CCNGG 5 cut(s) 250, 603, 878, 1025, 1440
BmrI ACTGGG 1 cut(s) 1594
BmsI GCATC 5 cut(s) 34, 351, 607, 707, 1129
BmuI ACTGGG 1 cut(s) 1594
BpiI GAAGAC 1 cut(s) 1054
BpmI CTGGAG 3 cut(s) 494, 1088, 1279
Bpu10I CCTNAGC 1 cut(s) 1734
BpuEI CTTGAG 2 cut(s) 400, 942
BpuMI CCSGG 3 cut(s) 250, 878, 1025
BsaAI YACGTR 1 cut(s) 503
BsaHI GRCGYC 3 cut(s) 238, 401, 443
BsaJI CCNNGG 5 cut(s) 131, 602, 827, 1230, 1439
BsaXI ACNNNNNCTCC 6 cut(s) 377, 407, 1091, 1121, 1612, 1642
Bsc4I CCNNNNNNNGG 6 cut(s) 306, 381, 725, 883, 1111, 1440
Bse1I ACTGG 5 cut(s) 70, 261, 784, 1105, 1589
Bse21I CCTNAGG 1 cut(s) 1683
BseBI CCWGG 2 cut(s) 603, 1440
BseDI CCNNGG 5 cut(s) 131, 602, 827, 1230, 1439
BseGI GGATG 6 cut(s) 103, 484, 622, 773, 777, 797
BseLI CCNNNNNNNGG 6 cut(s) 306, 381, 725, 883, 1111, 1440
BseMII CTCAG 8 cut(s) 452, 1183, 1415, 1697, 1748, 1839, 1889, 1900
BseNI ACTGG 5 cut(s) 70, 261, 784, 1105, 1589
BseRI GAGGAG 4 cut(s) 193, 322, 361, 924
BseSI GKGCMC 1 cut(s) 93
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
BseYI CCCAGC 1 cut(s) 1434
Bsh1236I CGCG 5 cut(s) 133, 235, 274, 1232, 1696
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 6 cut(s) 41, 215, 430, 924, 1198, 1681
BshNI GGYRCC 1 cut(s) 237
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 5 cut(s) 437, 502, 958, 1017, 1104
BsiHKCI CYCGRG 1 cut(s) 1761
BsiSI CCGG 4 cut(s) 32, 250, 877, 1024
BslFI GGGAC 3 cut(s) 379, 430, 658
BslI CCNNNNNNNGG 6 cut(s) 306, 381, 725, 883, 1111, 1440
BsmAI GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 1934
BsmBI CGTCTC 3 cut(s) 175, 842, 1570
BsmFI GGGAC 3 cut(s) 379, 430, 658
BsmI GAATGC 1 cut(s) 1155
BsnI GGCC 6 cut(s) 41, 215, 430, 924, 1198, 1681
BsoBI CYCGRG 1 cut(s) 1761
Bsp1286I GDGCHC 6 cut(s) 93, 437, 502, 958, 1017, 1104
Bsp1407I TGTACA 1 cut(s) 1872
Bsp143I GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
BspANI GGCC 6 cut(s) 41, 215, 430, 924, 1198, 1681
BspCNI CTCAG 8 cut(s) 451, 1182, 1414, 1696, 1747, 1838, 1890, 1899
BspFNI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
BspLI GGNNCC 3 cut(s) 239, 1289, 1557
BspMI ACCTGC 1 cut(s) 1893
BspT107I GGYRCC 1 cut(s) 237
BsrBI CCGCTC 2 cut(s) 856, 1293
BsrGI TGTACA 1 cut(s) 1872
BsrI ACTGG 5 cut(s) 70, 261, 784, 1105, 1589
BssECI CCNNGG 5 cut(s) 131, 602, 827, 1230, 1439
BssMI GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
BssNI GRCGYC 3 cut(s) 238, 401, 443
BssT1I CCWWGG 1 cut(s) 827
Bst2UI CCWGG 2 cut(s) 603, 1440
Bst4CI ACNGT 8 cut(s) 355, 393, 421, 1267, 1355, 1424, 1870, 1877
Bst6I CTCTTC 1 cut(s) 993
BstACI GRCGYC 3 cut(s) 238, 401, 443
BstAUI TGTACA 1 cut(s) 1872
BstBAI YACGTR 1 cut(s) 503
BstC8I GCNNGC 3 cut(s) 49, 279, 339
BstDEI CTNAG 8 cut(s) 438, 1169, 1401, 1683, 1734, 1825, 1886, 1898
BstDSI CCRYGG 2 cut(s) 131, 1230
BstENI CCTNNNNNAGG 1 cut(s) 379
BstF5I GGATG 6 cut(s) 103, 484, 622, 773, 777, 797
BstFNI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
BstH2I RGCGCY 2 cut(s) 241, 338
BstHHI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
BstKTI GATC 7 cut(s) 578, 661, 724, 793, 937, 1381, 1606
BstMAI GTCTC 7 cut(s) 56, 175, 842, 1135, 1252, 1570, 1934
BstMBI GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 7 cut(s) 28, 278, 280, 334, 463, 1435, 1700
BstNI CCWGG 2 cut(s) 603, 1440
BstSCI CCNGG 5 cut(s) 248, 601, 876, 1023, 1438
BstSFI CTRYAG 2 cut(s) 1224, 1308
BstSLI GKGCMC 1 cut(s) 93
BstUI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
BstV1I GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
BstV2I GAAGAC 1 cut(s) 1054
BstX2I RGATCY 1 cut(s) 575
BstYI RGATCY 1 cut(s) 575
BstZI CGGCCG 1 cut(s) 39
Bsu36I CCTNAGG 1 cut(s) 1683
BsuRI GGCC 6 cut(s) 41, 215, 430, 924, 1198, 1681
BtgI CCRYGG 2 cut(s) 131, 1230
BtgZI GCGATG 1 cut(s) 1130
BtrI CACGTC 2 cut(s) 648, 940
BtsCI GGATG 6 cut(s) 103, 484, 622, 773, 777, 797
BtsIMutI CAGTG 1 cut(s) 1263
BveI ACCTGC 1 cut(s) 1893
Cac8I GCNNGC 3 cut(s) 49, 279, 339
CaiI CAGNNNCTG 2 cut(s) 989, 1802
CfoI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
Cfr13I GGNCC 1 cut(s) 1799
Cfr42I CCGCGG 2 cut(s) 134, 1233
CseI GACGC 1 cut(s) 432
Csp6I GTAC 3 cut(s) 761, 1740, 1873
CviAII CATG 6 cut(s) 82, 120, 206, 656, 1743, 1944
CviQI GTAC 3 cut(s) 761, 1740, 1873
DdeI CTNAG 8 cut(s) 438, 1169, 1401, 1683, 1734, 1825, 1886, 1898
DinI GGCGCC 1 cut(s) 239
DpnI GATC 7 cut(s) 577, 660, 723, 792, 936, 1380, 1605
DpnII GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
DrdI GACNNNNNNGTC 2 cut(s) 1502, 1797
DseDI GACNNNNNNGTC 2 cut(s) 1502, 1797
EaeI YGGCCR 2 cut(s) 39, 213
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 993
EarI CTCTTC 1 cut(s) 993
Ecl136II GAGCTC 1 cut(s) 1102
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 827
Eco147I AGGCCT 1 cut(s) 1198
Eco24I GRGCYC 1 cut(s) 1104
Eco47I GGWCC 1 cut(s) 1799
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 1102
Eco57I CTGAAG 3 cut(s) 1587, 1656, 1779
Eco72I CACGTG 1 cut(s) 503
Eco81I CCTNAGG 1 cut(s) 1683
Eco88I CYCGRG 1 cut(s) 1761
EcoICRI GAGCTC 1 cut(s) 1102
EcoNI CCTNNNNNAGG 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 1799
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 2 cut(s) 601, 1438
EcoT14I CCWWGG 1 cut(s) 827
EcoT22I ATGCAT 1 cut(s) 700
EcoT38I GRGCYC 1 cut(s) 1104
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 827
Esp3I CGTCTC 3 cut(s) 175, 842, 1570
FaeI CATG 6 cut(s) 85, 123, 209, 659, 1746, 1947
FalI AAGNNNNNCTT 2 cut(s) 1204, 1236
FaqI GGGAC 3 cut(s) 379, 430, 658
FatI CATG 6 cut(s) 81, 119, 205, 655, 1742, 1943
FauI CCCGC 4 cut(s) 334, 459, 849, 1225
FbaI TGATCA 3 cut(s) 658, 790, 1603
FokI GGATG 6 cut(s) 110, 491, 629, 780, 784, 784
FriOI GRGCYC 1 cut(s) 1104
FspBI CTAG 4 cut(s) 702, 828, 897, 1371
GlaI GCGC 6 cut(s) 234, 239, 273, 282, 336, 1695
GsaI CCCAGC 1 cut(s) 1438
GsuI CTGGAG 3 cut(s) 494, 1088, 1279
HaeII RGCGCY 2 cut(s) 241, 338
HaeIII GGCC 6 cut(s) 41, 215, 430, 924, 1198, 1681
HapII CCGG 4 cut(s) 32, 250, 877, 1024
HgaI GACGC 1 cut(s) 432
HhaI GCGC 6 cut(s) 235, 240, 274, 283, 337, 1696
Hin1I GRCGYC 3 cut(s) 238, 401, 443
Hin1II CATG 6 cut(s) 85, 123, 209, 659, 1746, 1947
Hin6I GCGC 6 cut(s) 233, 238, 272, 281, 335, 1694
HinP1I GCGC 6 cut(s) 233, 238, 272, 281, 335, 1694
HincII GTYRAC 1 cut(s) 1327
HindII GTYRAC 1 cut(s) 1327
HpaII CCGG 4 cut(s) 32, 250, 877, 1024
Hpy166II GTNNAC 4 cut(s) 671, 1327, 1853, 1873
Hpy188I TCNGA 8 cut(s) 177, 325, 580, 663, 1135, 1172, 1786, 1899
Hpy8I GTNNAC 4 cut(s) 671, 1327, 1853, 1873
Hpy99I CGWCG 5 cut(s) 403, 406, 734, 930, 1818
HpyAV CCTTC 5 cut(s) 385, 1230, 1277, 1619, 1803
HpyCH4III ACNGT 8 cut(s) 355, 393, 421, 1267, 1355, 1424, 1870, 1877
HpyCH4IV ACGT 6 cut(s) 401, 502, 647, 732, 939, 1579
HpyCH4V TGCA 6 cut(s) 22, 349, 449, 457, 698, 889
HpyF10VI GCNNNNNNNGC 7 cut(s) 28, 278, 280, 334, 463, 1435, 1700
HpyF3I CTNAG 8 cut(s) 438, 1169, 1401, 1683, 1734, 1825, 1886, 1898
HpySE526I ACGT 6 cut(s) 401, 502, 647, 732, 939, 1579
Hsp92I GRCGYC 3 cut(s) 238, 401, 443
Hsp92II CATG 6 cut(s) 85, 123, 209, 659, 1746, 1947
HspAI GCGC 6 cut(s) 233, 238, 272, 281, 335, 1694
KasI GGCGCC 1 cut(s) 237
Ksp22I TGATCA 3 cut(s) 658, 790, 1603
KspI CCGCGG 2 cut(s) 134, 1233
Kzo9I GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
Lsp1109I GCAGC 6 cut(s) 6, 178, 214, 217, 541, 973
LweI GCATC 5 cut(s) 34, 351, 607, 707, 1129
MaeI CTAG 4 cut(s) 702, 828, 897, 1371
MaeII ACGT 6 cut(s) 401, 502, 647, 732, 939, 1579
MaeIII GTNAC 5 cut(s) 387, 651, 940, 1454, 1580
MalI GATC 7 cut(s) 577, 660, 723, 792, 936, 1380, 1605
MbiI CCGCTC 2 cut(s) 856, 1293
MboI GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
MboII GAAGA 9 cut(s) 944, 1010, 1059, 1217, 1220, 1580, 1649, 1721, 1845
MfeI CAATTG 3 cut(s) 1247, 1475, 1560
MflI RGATCY 1 cut(s) 575
MhlI GDGCHC 6 cut(s) 93, 437, 502, 958, 1017, 1104
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 6 cut(s) 227, 329, 362, 395, 554, 989
MmeI TCCRAC 4 cut(s) 171, 303, 1370, 1627
Mph1103I ATGCAT 1 cut(s) 700
MseI TTAA 3 cut(s) 1277, 1362, 1611
MslI CAYNNNNRTG 1 cut(s) 96
MspA1I CMGCKG 5 cut(s) 19, 133, 986, 1232, 1502
MspI CCGG 4 cut(s) 32, 250, 877, 1024
MspR9I CCNGG 5 cut(s) 250, 603, 878, 1025, 1440
MteI GCGCNGCGC 1 cut(s) 236
MunI CAATTG 3 cut(s) 1247, 1475, 1560
Mva1269I GAATGC 1 cut(s) 1155
MvaI CCWGG 2 cut(s) 603, 1440
MvnI CGCG 5 cut(s) 133, 235, 274, 1232, 1696
MwoI GCNNNNNNNGC 7 cut(s) 28, 278, 280, 334, 463, 1435, 1700
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 3 cut(s) 250, 878, 1025
NdeII GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
NlaIII CATG 6 cut(s) 85, 123, 209, 659, 1746, 1947
NlaIV GGNNCC 3 cut(s) 239, 1289, 1557
NmeAIII GCCGAG 2 cut(s) 241, 456
NmuCI GTSAC 4 cut(s) 387, 651, 940, 1454
NsiI ATGCAT 1 cut(s) 700
PceI AGGCCT 1 cut(s) 1198
PcsI WCGNNNNNNNCGW 1 cut(s) 922
PctI GAATGC 1 cut(s) 1155
PfeI GAWTC 9 cut(s) 35, 136, 313, 598, 870, 1179, 1340, 1367, 1836
PflFI GACNNNGTC 1 cut(s) 649
PflMI CCANNNNNTGG 1 cut(s) 1111
PfoI TCCNGGA 2 cut(s) 248, 876
PleI GAGTC 6 cut(s) 226, 328, 362, 394, 553, 988
PluTI GGCGCC 1 cut(s) 241
PmaCI CACGTG 1 cut(s) 503
PmlI CACGTG 1 cut(s) 503
PpsI GAGTC 6 cut(s) 226, 328, 362, 394, 553, 988
Ppu21I YACGTR 1 cut(s) 503
PpuMI RGGWCCY 1 cut(s) 1799
Psp124BI GAGCTC 1 cut(s) 1104
Psp5II RGGWCCY 1 cut(s) 1799
Psp6I CCWGG 2 cut(s) 601, 1438
PspCI CACGTG 1 cut(s) 503
PspFI CCCAGC 1 cut(s) 1434
PspGI CCWGG 2 cut(s) 601, 1438
PspN4I GGNNCC 3 cut(s) 239, 1289, 1557
PspPI GGNCC 1 cut(s) 1799
PspPPI RGGWCCY 1 cut(s) 1799
PstNI CAGNNNCTG 2 cut(s) 989, 1802
PsuI RGATCY 1 cut(s) 575
PsyI GACNNNGTC 1 cut(s) 649
PvuII CAGCTG 2 cut(s) 986, 1502
RsaI GTAC 3 cut(s) 762, 1741, 1874
RsaNI GTAC 3 cut(s) 761, 1740, 1873
RseI CAYNNNNRTG 1 cut(s) 96
SacI GAGCTC 1 cut(s) 1104
SacII CCGCGG 2 cut(s) 134, 1233
SaqAI TTAA 3 cut(s) 1277, 1362, 1611
Sau3AI GATC 7 cut(s) 575, 658, 721, 790, 934, 1378, 1603
Sau96I GGNCC 1 cut(s) 1799
SchI GAGTC 6 cut(s) 227, 329, 362, 395, 554, 989
ScrFI CCNGG 5 cut(s) 250, 603, 878, 1025, 1440
SduI GDGCHC 6 cut(s) 93, 437, 502, 958, 1017, 1104
SfaNI GCATC 5 cut(s) 34, 351, 607, 707, 1129
SfcI CTRYAG 2 cut(s) 1224, 1308
SfoI GGCGCC 1 cut(s) 239
Sfr303I CCGCGG 2 cut(s) 134, 1233
SgrBI CCGCGG 2 cut(s) 134, 1233
SinI GGWCC 1 cut(s) 1799
SmiMI CAYNNNNRTG 1 cut(s) 96
SmlI CTYRAG 2 cut(s) 379, 957
SmoI CTYRAG 2 cut(s) 379, 957
SseBI AGGCCT 1 cut(s) 1198
SspDI GGCGCC 1 cut(s) 237
SspMI CTAG 4 cut(s) 702, 828, 897, 1371
SstI GAGCTC 1 cut(s) 1104
StuI AGGCCT 1 cut(s) 1198
StyD4I CCNGG 5 cut(s) 248, 601, 876, 1023, 1438
StyI CCWWGG 1 cut(s) 827
TaaI ACNGT 8 cut(s) 355, 393, 421, 1267, 1355, 1424, 1870, 1877
TaiI ACGT 6 cut(s) 404, 505, 650, 735, 942, 1582
TaqI TCGA 7 cut(s) 60, 359, 366, 404, 423, 1123, 1506
TatI WGTACW 1 cut(s) 1872
TauI GCSGC 6 cut(s) 19, 238, 272, 277, 412, 1232
TfiI GAWTC 9 cut(s) 35, 136, 313, 598, 870, 1179, 1340, 1367, 1836
Tru1I TTAA 3 cut(s) 1277, 1362, 1611
Tru9I TTAA 3 cut(s) 1277, 1362, 1611
TscAI CASTG 1 cut(s) 1270
TseFI GTSAC 4 cut(s) 387, 651, 940, 1454
TseI GCWGC 6 cut(s) 19, 166, 227, 230, 529, 986
Tsp45I GTSAC 4 cut(s) 387, 651, 940, 1454
TspDTI ATGAA 6 cut(s) 70, 108, 114, 786, 1206, 1941
TspGWI ACGGA 3 cut(s) 20, 199, 866
TspRI CASTG 1 cut(s) 1270
Tth111I GACNNNGTC 1 cut(s) 649
Van91I CCANNNNNTGG 1 cut(s) 1111
VpaK11BI GGWCC 1 cut(s) 1799
XagI CCTNNNNNAGG 1 cut(s) 379
XapI RAATTY 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 1370
XmaJI CCTAGG 1 cut(s) 827
XspI CTAG 4 cut(s) 702, 828, 897, 1371
ZraI GACGTC 1 cut(s) 402
Zsp2I ATGCAT 1 cut(s) 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.