Rroxscaffold_4G00315820

Zinc finger, C3HC4 type (RING finger)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0004489
Physical Location & Seq
Reverse (-)
40391663 .. 40396905
5243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00315820.1

Sequence Viewer

Length: 2529 bp
ATGACGGACTTTGAGCCGCTGCAACAGAAGCCGGAATCGGCCGATGCCTGCGGTGATTTCGAGACTGGATATGAGGAATTCATGCGAGGGCACCTGGATGAATGTATGTCATTTGCTTCATGTAGCTCTCCGCGGAATCCTGATGATGAGGATGATGAGGGGGAGCAGCTTGTTCGGAGGAGACGGAGGCTGGATTTGGAGGGGGATGATTTGGCCGAGTCTTCTGCTGCTGCGCGGCGCCACCACTCGCGGATTTTGACCCGTTGGGCGGCGCGGCAGGCGCAGGAGATGATTACCACCATTGAGAGGAGGAATCGGGAGTCGGAGCTGATGGCGCTTGCGGGGTTGCATACGGTTTCGATGCTCGACTCCTCCTTCTTGAGGGAGTCACAGTCCCCGACGTCTAGGCGGCAGGGGACTGTGGAGAGGCCGAGCACTCAGGCGTCTGCAATTTTGCAAATGTGGCGGGAGCTGGAGGATGAGCATTTGTTGAATAGAGCCCGTGGGAGGTCGGGGAGTGAGAATCCTGGGAGTTTGGTGGATGCGAGTGAGAGTGAAAATGAGTATGGGACGTGGTCACATGATCAGATGGGTTCACCAAACGAACGAGGTGATAATAATGCATCTAGCAGGGAGCAATCTCCCGATCTTGGCGAAGTTGAGAGGGAGAGAGTGAGGCAGATTGTACGGGGATGGATGGAAACTGGCATTACTGATCATTCATCCAATGTTGCTCCAAGAAATAGTAGTCCTAGGGCAGAGTGGCTTGGTGAGACGGAGCGGGAAAGGGTGAGAATCGTCCGGGAGTGGGTGCAAATGGCTAGTCAGCCGAGAGGAGGTCGTGGAGGCCGACGGGAAGATCACGTCACCAATGGTGGTGCTCAAGTTGGTATAGTGCGTGATGAATCAGCTGCTGATCAAGAAGAGAGCCAACCAGAGCACATTCGCCGGGATATGTTGAGGTTGCGTGGAAGACAAGCTATAATTGATTTGCTTGTGAGAATTGAGCGGGAAAGACAAAGGGAGCTCCAGTCTTTGGTGGAGCATCGAGCTGTCTCTGATTTTGCTCATCGCAACCGCATCCAGTCATTACTCAGAGGTAGATTCTTGCGAAATGAAAGGCCTGTTGAAGAAGAAAGACCACCTTCTATAGCTGCAGGTGAATTAGTCCAATTGAGGCAGAGACACACTGTTTCTGGTTTAAGGGAAGGGTTCCGCTCCAGATTAGAAACTATAGTTCGTGGTCAAGTTGACGGCAATAATGATTCTCCGACAAACAGTAATGTTAATGATTCTAGAAGTGATCATACCCAAACAATCGCTTCTCAGGATATTCAGCAGGAAAACCGTGAGCAATCCCAGCCTGGGAGCGAGGGAGGTGACAATCAGTTCCCTAATCAATTGGGGAACTTGGAAAATGACACAGCTGTCGAGCGACTTGATTGGCAAGAAACTGCTAATCAAGGTGGGAATTGGCAGGAACCAATTGCTGAAGATGAGAGACGTAACTGGGAGCAGACAACTTTTGATCAATTTAACGATTGGAGGGAAGGTAATGCTGAAGATATAGTTGGAAATTGGCAAGAAAGTTCTGTCAATAATTGGCCTCAGGGAACTGCGCGAAATGCTGATGAAGAAACAGGTCATCAACAAGAAGCTCAGGGTACATGGCGTGGGAATAGTTCTCGGGAAGCTGTTGAGAATTGGTCAGAAAGACCTTCAGGTCCTGTGAGAAATCGTCGTTCTGGCTCAGTTAGAAGATTCAATAGATTTAGTCCACCAGATGATGATACCGTGTACAGTATGGAACTCAGGGAACTTCTGAGCAGGAGAAGTGTTTCGAATCTTCTTCGTAGTGGATTCCGTGAAAGTCTGGACCAGCTGATACAATCATATGTTGAAAGGCAAAGTCGTGCTCCCATTGATTGGGATTTGCATAGAAACTTGCCAACACCAACTCCAGCTTCACCAGTGCAGGACCAGGACCAACAGAGGGATGAGCTGAATGAAGATCAGCATGATGCCATCAACAGACCTTCACGTGTTCTACCATCTCCACCAGTTCCCCCACCACAACCATTATGGCATCAGGACTTGCATAACACTGGCTGGTCTCGCCATAGCATGCATCGTTCAGAAATTGAATGGGAGATGTTTAATGATCTCAGATCAGACATGGCAAGACTCCAGCAAGGCATGAGCCACATGCAAAGGATGTTGGAGGCCTGCATGGATATGCAATTGGAGTTGCAGCGTTCTGTCAGACAGGAAGTCTCGGCGGCTCTCAATCGTTCGCCTGGTGAAAAAGGGTCAAGTGCTGAGACATCAGAGGATGGTTCTAAATGGGGTCATGTAAGAAAAGGAACTTGTTGTGTTTGTTGTGATAGTCACATCGATTCTCTCTTGTATAGATGCGGGCATATGTGTACATGTTCAAAATGTGCAAACGAATTGGTTCGTGGTGGAGGCAAGTGCCCACTTTGTCGAGCGCCTATAGTTGAGGTGATCCGTGCATACTCCATACTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000209 GO:0001654 GO:0001709 GO:0002009 GO:0002064 GO:0002065 GO:0002066 GO:0002165 GO:0002682 GO:0002683 GO:0003002 GO:0003006 GO:0003008 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005543 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005886 GO:0006464 GO:0006807 GO:0007275 GO:0007276 GO:0007281 GO:0007292 GO:0007389 GO:0007398 GO:0007399 GO:0007422 GO:0007423 GO:0007444 GO:0007472 GO:0007476 GO:0007498 GO:0007552 GO:0007560 GO:0007610 GO:0007611 GO:0007613 GO:0007616 GO:0008052 GO:0008104 GO:0008150 GO:0008152 GO:0008270 GO:0008289 GO:0008356 GO:0008593 GO:0009653 GO:0009791 GO:0009886 GO:0009887 GO:0009888 GO:0009966 GO:0009967 GO:0009987 GO:0010160 GO:0010646 GO:0010647 GO:0016020 GO:0016043 GO:0016360 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019827 GO:0019953 GO:0022008 GO:0022412 GO:0022414 GO:0022603 GO:0022607 GO:0023051 GO:0023056 GO:0030154 GO:0030707 GO:0030718 GO:0030855 GO:0032446 GO:0032501 GO:0032502 GO:0032504 GO:0033036 GO:0035091 GO:0035107 GO:0035114 GO:0035120 GO:0035203 GO:0035204 GO:0035220 GO:0035239 GO:0035295 GO:0036211 GO:0042478 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043412 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0044703 GO:0045165 GO:0045314 GO:0045595 GO:0045596 GO:0045610 GO:0045611 GO:0045613 GO:0045614 GO:0045664 GO:0045747 GO:0046532 GO:0046872 GO:0046914 GO:0048468 GO:0048471 GO:0048477 GO:0048513 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048563 GO:0048569 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0048609 GO:0048645 GO:0048646 GO:0048699 GO:0048707 GO:0048729 GO:0048731 GO:0048736 GO:0048737 GO:0048749 GO:0048856 GO:0048859 GO:0048869 GO:0050767 GO:0050789 GO:0050793 GO:0050794 GO:0050877 GO:0050890 GO:0051093 GO:0051179 GO:0051239 GO:0051241 GO:0051259 GO:0051260 GO:0051301 GO:0051704 GO:0051960 GO:0060284 GO:0060429 GO:0060562 GO:0060581 GO:0060582 GO:0061630 GO:0061659 GO:0065003 GO:0065007 GO:0070647 GO:0071704 GO:0071840 GO:0071944 GO:0098727 GO:0140096 GO:1901564 GO:1901981 GO:1903706 GO:1903707 GO:2000026 GO:2000027
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-C3HC4_3

Protein Analysis

842

Amino Acids

96.21

Weight (kDa)

5.32

Isoelectric Point (pI)

69.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 787 - 834 5.6e-11 Zinc finger, C3HC4 type (RING finger)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1148
AasI GACNNNNNNGTC 2 cut(s) 1427, 1722
AatII GACGTC 1 cut(s) 404
Acc36I ACCTGC 1 cut(s) 1148
AccB1I GGYRCC 2 cut(s) 90, 237
AccB7I CCANNNNNTGG 2 cut(s) 1036, 1926
AccBSI CCGCTC 3 cut(s) 781, 1009, 1218
AccII CGCG 5 cut(s) 133, 235, 250, 274, 1621
AclWI GGATC 1 cut(s) 2500
AcoI YGGCCR 2 cut(s) 39, 213
AcsI RAATTY 1 cut(s) 77
AcuI CTGAAG 3 cut(s) 1512, 1581, 1704
AcvI CACGTG 1 cut(s) 2042
AcyI GRCGYC 3 cut(s) 238, 401, 443
AfaI GTAC 4 cut(s) 687, 1666, 1799, 2428
AflIII ACRYGT 2 cut(s) 2041, 2429
AgsI TTSAA 6 cut(s) 493, 1130, 1765, 1901, 2144, 2436
AhdI GACNNNNNGTC 1 cut(s) 2270
AjiI CACGTC 2 cut(s) 573, 865
AjnI CCWGG 5 cut(s) 93, 526, 1363, 1980, 2296
AjuI GAANNNNNNNTTGG 4 cut(s) 1554, 1586, 1948, 1980
Alw21I GWGCWC 5 cut(s) 437, 883, 942, 1029, 1918
Alw26I GTCTC 9 cut(s) 56, 175, 767, 1060, 1177, 1495, 2118, 2278, 2315
AlwI GGATC 1 cut(s) 2500
AlwNI CAGNNNCTG 2 cut(s) 914, 1727
Ama87I CYCGRG 1 cut(s) 1686
AoxI GGCC 7 cut(s) 39, 213, 428, 847, 1121, 1604, 2223
ApeKI GCWGC 7 cut(s) 19, 166, 227, 230, 911, 1154, 2251
ApoI RAATTY 1 cut(s) 77
ArsI GACNNNNNNTTYG 2 cut(s) 808, 840
Asp700I GAANNNNTTC 2 cut(s) 1837, 2454
AspA2I CCTAGG 1 cut(s) 752
AspLEI GCGC 7 cut(s) 235, 240, 274, 283, 337, 1621, 2491
AspS9I GGNCC 4 cut(s) 1724, 1876, 1978, 1984
AsuC2I CCSGG 2 cut(s) 803, 950
AsuII TTCGAA 1 cut(s) 1841
AvaI CYCGRG 1 cut(s) 1686
AvaII GGWCC 4 cut(s) 1724, 1876, 1978, 1984
AvrII CCTAGG 1 cut(s) 752
AxyI CCTNAGG 1 cut(s) 1608
BaeGI GKGCMC 2 cut(s) 93, 2477
BanI GGYRCC 2 cut(s) 90, 237
BanII GRGCYC 2 cut(s) 502, 1029
BarI GAAGNNNNNNTAC 2 cut(s) 1291, 1323
BbrPI CACGTG 1 cut(s) 2042
BbsI GAAGAC 2 cut(s) 213, 979
Bbv12I GWGCWC 5 cut(s) 437, 883, 942, 1029, 1918
BbvI GCAGC 7 cut(s) 6, 178, 214, 217, 898, 1141, 2263
BccI CCATC 7 cut(s) 325, 583, 687, 691, 2033, 2059, 2327
BceAI ACGGC 1 cut(s) 1270
BcgI CGANNNNNNTGC 4 cut(s) 155, 189, 206, 240
BciT130I CCWGG 5 cut(s) 95, 528, 1365, 1982, 2298
BclI TGATCA 5 cut(s) 583, 715, 916, 1303, 1528
BcnI CCSGG 2 cut(s) 803, 950
BcoDI GTCTC 9 cut(s) 56, 175, 767, 1060, 1177, 1495, 2118, 2278, 2315
BfaI CTAG 5 cut(s) 405, 627, 753, 822, 1296
BfmI CTRYAG 5 cut(s) 1149, 1155, 1233, 2493, 2525
BfoI RGCGCY 3 cut(s) 241, 338, 2492
BfuAI ACCTGC 1 cut(s) 1148
BlnI CCTAGG 1 cut(s) 752
Bme1390I CCNGG 7 cut(s) 95, 528, 803, 950, 1365, 1982, 2298
Bme18I GGWCC 4 cut(s) 1724, 1876, 1978, 1984
BmeRI GACNNNNNGTC 1 cut(s) 2270
BmeT110I CYCGRG 1 cut(s) 1686
BmgBI CACGTC 2 cut(s) 573, 865
BmgT120I GGNCC 4 cut(s) 1724, 1876, 1978, 1984
BmiI GGNNCC 4 cut(s) 92, 239, 1214, 1482
BmrFI CCNGG 7 cut(s) 95, 528, 803, 950, 1365, 1982, 2298
BmrI ACTGGG 1 cut(s) 1519
BmuI ACTGGG 1 cut(s) 1519
BpiI GAAGAC 2 cut(s) 213, 979
BpmI CTGGAG 5 cut(s) 494, 1013, 1204, 1944, 2171
Bpu10I CCTNAGC 1 cut(s) 1659
Bpu14I TTCGAA 1 cut(s) 1841
BpuEI CTTGAG 2 cut(s) 400, 867
BpuMI CCSGG 2 cut(s) 803, 950
Bsa29I ATCGAT 1 cut(s) 2394
BsaAI YACGTR 1 cut(s) 2042
BsaHI GRCGYC 3 cut(s) 238, 401, 443
BsaI GGTCTC 1 cut(s) 2118
BsaJI CCNNGG 5 cut(s) 131, 502, 527, 752, 1364
BsaXI ACNNNNNCTCC 8 cut(s) 377, 407, 1016, 1046, 1537, 1567, 1942, 1972
Bse1I ACTGG 8 cut(s) 70, 709, 1030, 1084, 1514, 1970, 2060, 2110
Bse21I CCTNAGG 1 cut(s) 1608
BseBI CCWGG 5 cut(s) 95, 528, 1365, 1982, 2298
BseCI ATCGAT 1 cut(s) 2394
BseDI CCNNGG 5 cut(s) 131, 502, 527, 752, 1364
BseNI ACTGG 8 cut(s) 70, 709, 1030, 1084, 1514, 1970, 2060, 2110
BseRI GAGGAG 4 cut(s) 193, 322, 361, 849
BseSI GKGCMC 2 cut(s) 93, 2477
BseX3I CGGCCG 1 cut(s) 39
BseXI GCAGC 7 cut(s) 6, 178, 214, 217, 898, 1141, 2263
BseYI CCCAGC 1 cut(s) 1359
BsgI GTGCAG 1 cut(s) 1994
Bsh1236I CGCG 5 cut(s) 133, 235, 250, 274, 1621
Bsh1285I CGRYCG 1 cut(s) 42
BshFI GGCC 7 cut(s) 41, 215, 430, 849, 1123, 1606, 2225
BshNI GGYRCC 2 cut(s) 90, 237
BshVI ATCGAT 1 cut(s) 2394
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 5 cut(s) 437, 883, 942, 1029, 1918
BsiHKCI CYCGRG 1 cut(s) 1686
BsiSI CCGG 3 cut(s) 32, 802, 949
BslFI GGGAC 3 cut(s) 379, 430, 583
BsmAI GTCTC 9 cut(s) 56, 175, 767, 1060, 1177, 1495, 2118, 2278, 2315
BsmBI CGTCTC 3 cut(s) 175, 767, 1495
BsmFI GGGAC 3 cut(s) 379, 430, 583
BsnI GGCC 7 cut(s) 41, 215, 430, 849, 1123, 1606, 2225
Bso31I GGTCTC 1 cut(s) 2118
BsoBI CYCGRG 1 cut(s) 1686
Bsp119I TTCGAA 1 cut(s) 1841
Bsp1286I GDGCHC 8 cut(s) 93, 437, 502, 883, 942, 1029, 1918, 2477
Bsp1407I TGTACA 2 cut(s) 1797, 2426
BspANI GGCC 7 cut(s) 41, 215, 430, 849, 1123, 1606, 2225
BspDI ATCGAT 1 cut(s) 2394
BspFNI CGCG 5 cut(s) 133, 235, 250, 274, 1621
BspLI GGNNCC 4 cut(s) 92, 239, 1214, 1482
BspMAI CTGCAG 1 cut(s) 1159
BspMI ACCTGC 1 cut(s) 1148
BspPI GGATC 1 cut(s) 2500
BspT104I TTCGAA 1 cut(s) 1841
BspT107I GGYRCC 2 cut(s) 90, 237
BspTNI GGTCTC 1 cut(s) 2118
BsrBI CCGCTC 3 cut(s) 781, 1009, 1218
BsrGI TGTACA 2 cut(s) 1797, 2426
BsrI ACTGG 8 cut(s) 70, 709, 1030, 1084, 1514, 1970, 2060, 2110
BssECI CCNNGG 5 cut(s) 131, 502, 527, 752, 1364
BssNI GRCGYC 3 cut(s) 238, 401, 443
BssT1I CCWWGG 1 cut(s) 752
Bst2UI CCWGG 5 cut(s) 95, 528, 1365, 1982, 2298
Bst4CI ACNGT 9 cut(s) 355, 393, 421, 1192, 1280, 1349, 1795, 1802, 2526
Bst6I CTCTTC 1 cut(s) 918
BstACI GRCGYC 3 cut(s) 238, 401, 443
BstAUI TGTACA 2 cut(s) 1797, 2426
BstBAI YACGTR 1 cut(s) 2042
BstBI TTCGAA 1 cut(s) 1841
BstC8I GCNNGC 6 cut(s) 49, 279, 339, 2126, 2227, 2417
BstDSI CCRYGG 2 cut(s) 131, 502
BstENI CCTNNNNNAGG 1 cut(s) 379
BstFNI CGCG 5 cut(s) 133, 235, 250, 274, 1621
BstH2I RGCGCY 3 cut(s) 241, 338, 2492
BstHHI GCGC 7 cut(s) 235, 240, 274, 283, 337, 1621, 2491
BstMAI GTCTC 9 cut(s) 56, 175, 767, 1060, 1177, 1495, 2118, 2278, 2315
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 8 cut(s) 28, 278, 280, 334, 463, 1360, 1625, 2115
BstNI CCWGG 5 cut(s) 95, 528, 1365, 1982, 2298
BstNSI RCATGY 3 cut(s) 2128, 2209, 2433
BstSCI CCNGG 7 cut(s) 93, 526, 801, 948, 1363, 1980, 2296
BstSFI CTRYAG 5 cut(s) 1149, 1155, 1233, 2493, 2525
BstSLI GKGCMC 2 cut(s) 93, 2477
BstUI CGCG 5 cut(s) 133, 235, 250, 274, 1621
BstV1I GCAGC 7 cut(s) 6, 178, 214, 217, 898, 1141, 2263
BstV2I GAAGAC 2 cut(s) 213, 979
BstZI CGGCCG 1 cut(s) 39
Bsu15I ATCGAT 1 cut(s) 2394
Bsu36I CCTNAGG 1 cut(s) 1608
BsuRI GGCC 7 cut(s) 41, 215, 430, 849, 1123, 1606, 2225
BsuTUI ATCGAT 1 cut(s) 2394
BtgI CCRYGG 2 cut(s) 131, 502
BtgZI GCGATG 1 cut(s) 1055
BtrI CACGTC 2 cut(s) 573, 865
BtsIMutI CAGTG 3 cut(s) 1188, 1977, 2103
BveI ACCTGC 1 cut(s) 1148
Cac8I GCNNGC 6 cut(s) 49, 279, 339, 2126, 2227, 2417
CaiI CAGNNNCTG 2 cut(s) 914, 1727
CfoI GCGC 7 cut(s) 235, 240, 274, 283, 337, 1621, 2491
Cfr13I GGNCC 4 cut(s) 1724, 1876, 1978, 1984
Cfr42I CCGCGG 1 cut(s) 134
ClaI ATCGAT 1 cut(s) 2394
CseI GACGC 1 cut(s) 432
Csp6I GTAC 4 cut(s) 686, 1665, 1798, 2427
CviQI GTAC 4 cut(s) 686, 1665, 1798, 2427
DinI GGCGCC 1 cut(s) 239
DrdI GACNNNNNNGTC 2 cut(s) 1427, 1722
DriI GACNNNNNGTC 1 cut(s) 2270
DseDI GACNNNNNNGTC 2 cut(s) 1427, 1722
EaeI YGGCCR 2 cut(s) 39, 213
EagI CGGCCG 1 cut(s) 39
Eam1104I CTCTTC 1 cut(s) 918
Eam1105I GACNNNNNGTC 1 cut(s) 2270
EarI CTCTTC 1 cut(s) 918
Ecl136II GAGCTC 1 cut(s) 1027
EclXI CGGCCG 1 cut(s) 39
Eco130I CCWWGG 1 cut(s) 752
Eco147I AGGCCT 2 cut(s) 1123, 2225
Eco24I GRGCYC 2 cut(s) 502, 1029
Eco31I GGTCTC 1 cut(s) 2118
Eco47I GGWCC 4 cut(s) 1724, 1876, 1978, 1984
Eco52I CGGCCG 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 1027
Eco57I CTGAAG 3 cut(s) 1512, 1581, 1704
Eco72I CACGTG 1 cut(s) 2042
Eco81I CCTNAGG 1 cut(s) 1608
Eco88I CYCGRG 1 cut(s) 1686
EcoICRI GAGCTC 1 cut(s) 1027
EcoNI CCTNNNNNAGG 1 cut(s) 379
EcoO109I RGGNCCY 1 cut(s) 1724
EcoRI GAATTC 1 cut(s) 77
EcoRII CCWGG 5 cut(s) 93, 526, 1363, 1980, 2296
EcoT14I CCWWGG 1 cut(s) 752
EcoT22I ATGCAT 2 cut(s) 625, 2130
EcoT38I GRGCYC 2 cut(s) 502, 1029
EgeI GGCGCC 1 cut(s) 239
EheI GGCGCC 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 752
Esp3I CGTCTC 3 cut(s) 175, 767, 1495
FalI AAGNNNNNCTT 2 cut(s) 1129, 1161
FaqI GGGAC 3 cut(s) 379, 430, 583
FauI CCCGC 5 cut(s) 334, 459, 774, 1002, 2408
FauNDI CATATG 2 cut(s) 1894, 2421
FbaI TGATCA 5 cut(s) 583, 715, 916, 1303, 1528
FriOI GRGCYC 2 cut(s) 502, 1029
FspBI CTAG 5 cut(s) 405, 627, 753, 822, 1296
GlaI GCGC 7 cut(s) 234, 239, 273, 282, 336, 1620, 2490
GsaI CCCAGC 1 cut(s) 1363
GsuI CTGGAG 5 cut(s) 494, 1013, 1204, 1944, 2171
HaeII RGCGCY 3 cut(s) 241, 338, 2492
HaeIII GGCC 7 cut(s) 41, 215, 430, 849, 1123, 1606, 2225
HapII CCGG 3 cut(s) 32, 802, 949
HgaI GACGC 1 cut(s) 432
HhaI GCGC 7 cut(s) 235, 240, 274, 283, 337, 1621, 2491
Hin1I GRCGYC 3 cut(s) 238, 401, 443
Hin6I GCGC 7 cut(s) 233, 238, 272, 281, 335, 1619, 2489
HinP1I GCGC 7 cut(s) 233, 238, 272, 281, 335, 1619, 2489
HincII GTYRAC 1 cut(s) 1252
HindII GTYRAC 1 cut(s) 1252
HpaII CCGG 3 cut(s) 32, 802, 949
Hpy166II GTNNAC 5 cut(s) 596, 1252, 1778, 1798, 2427
Hpy8I GTNNAC 5 cut(s) 596, 1252, 1778, 1798, 2427
Hpy99I CGWCG 3 cut(s) 403, 855, 1743
HpyAV CCTTC 6 cut(s) 385, 1155, 1202, 1544, 1728, 2046
HpyCH4III ACNGT 9 cut(s) 355, 393, 421, 1192, 1280, 1349, 1795, 1802, 2526
HpyCH4IV ACGT 5 cut(s) 401, 572, 864, 1504, 2041
HpyF10VI GCNNNNNNNGC 8 cut(s) 28, 278, 280, 334, 463, 1360, 1625, 2115
HpySE526I ACGT 5 cut(s) 401, 572, 864, 1504, 2041
Hsp92I GRCGYC 3 cut(s) 238, 401, 443
HspAI GCGC 7 cut(s) 233, 238, 272, 281, 335, 1619, 2489
KasI GGCGCC 1 cut(s) 237
Ksp22I TGATCA 5 cut(s) 583, 715, 916, 1303, 1528
KspI CCGCGG 1 cut(s) 134
Lsp1109I GCAGC 7 cut(s) 6, 178, 214, 217, 898, 1141, 2263
MaeI CTAG 5 cut(s) 405, 627, 753, 822, 1296
MaeII ACGT 5 cut(s) 401, 572, 864, 1504, 2041
MaeIII GTNAC 6 cut(s) 387, 576, 865, 1379, 1505, 2387
MbiI CCGCTC 3 cut(s) 781, 1009, 1218
MfeI CAATTG 4 cut(s) 1172, 1400, 1485, 2240
MhlI GDGCHC 8 cut(s) 93, 437, 502, 883, 942, 1029, 1918, 2477
Mly113I GGCGCC 1 cut(s) 238
MlyI GAGTC 5 cut(s) 227, 329, 362, 395, 2178
MmeI TCCRAC 4 cut(s) 303, 1295, 1552, 2199
Mph1103I ATGCAT 2 cut(s) 625, 2130
MroXI GAANNNNTTC 2 cut(s) 1837, 2454
MseI TTAA 4 cut(s) 1202, 1287, 1536, 2157
MslI CAYNNNNRTG 2 cut(s) 96, 2234
MspA1I CMGCKG 5 cut(s) 19, 133, 911, 1427, 1882
MspI CCGG 3 cut(s) 32, 802, 949
MspR9I CCNGG 7 cut(s) 95, 528, 803, 950, 1365, 1982, 2298
MteI GCGCNGCGC 1 cut(s) 236
MunI CAATTG 4 cut(s) 1172, 1400, 1485, 2240
MvaI CCWGG 5 cut(s) 95, 528, 1365, 1982, 2298
MvnI CGCG 5 cut(s) 133, 235, 250, 274, 1621
MwoI GCNNNNNNNGC 8 cut(s) 28, 278, 280, 334, 463, 1360, 1625, 2115
NarI GGCGCC 1 cut(s) 238
NciI CCSGG 2 cut(s) 803, 950
NdeI CATATG 2 cut(s) 1894, 2421
NlaIV GGNNCC 4 cut(s) 92, 239, 1214, 1482
NmeAIII GCCGAG 4 cut(s) 241, 456, 855, 2255
NmuCI GTSAC 5 cut(s) 387, 576, 865, 1379, 2387
NsiI ATGCAT 2 cut(s) 625, 2130
NspI RCATGY 3 cut(s) 2128, 2209, 2433
NspV TTCGAA 1 cut(s) 1841
PaeI GCATGC 1 cut(s) 2128
PaqCI CACCTGC 1 cut(s) 1148
PceI AGGCCT 2 cut(s) 1123, 2225
PciI ACATGT 1 cut(s) 2429
PcsI WCGNNNNNNNCGW 1 cut(s) 847
PdmI GAANNNNTTC 2 cut(s) 1837, 2454
PflFI GACNNNGTC 1 cut(s) 574
PflMI CCANNNNNTGG 2 cut(s) 1036, 1926
PfoI TCCNGGA 1 cut(s) 801
PleI GAGTC 5 cut(s) 226, 328, 362, 394, 2178
PluTI GGCGCC 1 cut(s) 241
PmaCI CACGTG 1 cut(s) 2042
PmlI CACGTG 1 cut(s) 2042
PpsI GAGTC 5 cut(s) 226, 328, 362, 394, 2178
Ppu21I YACGTR 1 cut(s) 2042
PpuMI RGGWCCY 1 cut(s) 1724
PscI ACATGT 1 cut(s) 2429
Psp124BI GAGCTC 1 cut(s) 1029
Psp5II RGGWCCY 1 cut(s) 1724
Psp6I CCWGG 5 cut(s) 93, 526, 1363, 1980, 2296
PspCI CACGTG 1 cut(s) 2042
PspFI CCCAGC 1 cut(s) 1359
PspGI CCWGG 5 cut(s) 93, 526, 1363, 1980, 2296
PspN4I GGNNCC 4 cut(s) 92, 239, 1214, 1482
PspPI GGNCC 4 cut(s) 1724, 1876, 1978, 1984
PspPPI RGGWCCY 1 cut(s) 1724
PstI CTGCAG 1 cut(s) 1159
PstNI CAGNNNCTG 2 cut(s) 914, 1727
PsyI GACNNNGTC 1 cut(s) 574
PvuII CAGCTG 3 cut(s) 911, 1427, 1882
RsaI GTAC 4 cut(s) 687, 1666, 1799, 2428
RsaNI GTAC 4 cut(s) 686, 1665, 1798, 2427
RseI CAYNNNNRTG 2 cut(s) 96, 2234
SacI GAGCTC 1 cut(s) 1029
SacII CCGCGG 1 cut(s) 134
SaqAI TTAA 4 cut(s) 1202, 1287, 1536, 2157
Sau96I GGNCC 4 cut(s) 1724, 1876, 1978, 1984
SchI GAGTC 5 cut(s) 227, 329, 362, 395, 2178
ScrFI CCNGG 7 cut(s) 95, 528, 803, 950, 1365, 1982, 2298
SduI GDGCHC 8 cut(s) 93, 437, 502, 883, 942, 1029, 1918, 2477
SfcI CTRYAG 5 cut(s) 1149, 1155, 1233, 2493, 2525
SfoI GGCGCC 1 cut(s) 239
Sfr303I CCGCGG 1 cut(s) 134
SfuI TTCGAA 1 cut(s) 1841
SgrBI CCGCGG 1 cut(s) 134
SinI GGWCC 4 cut(s) 1724, 1876, 1978, 1984
SmiMI CAYNNNNRTG 2 cut(s) 96, 2234
SmlI CTYRAG 2 cut(s) 379, 882
SmoI CTYRAG 2 cut(s) 379, 882
SphI GCATGC 1 cut(s) 2128
SseBI AGGCCT 2 cut(s) 1123, 2225
SspDI GGCGCC 1 cut(s) 237
SspMI CTAG 5 cut(s) 405, 627, 753, 822, 1296
SstI GAGCTC 1 cut(s) 1029
StuI AGGCCT 2 cut(s) 1123, 2225
StyD4I CCNGG 7 cut(s) 93, 526, 801, 948, 1363, 1980, 2296
StyI CCWWGG 1 cut(s) 752
TaaI ACNGT 9 cut(s) 355, 393, 421, 1192, 1280, 1349, 1795, 1802, 2526
TaiI ACGT 5 cut(s) 404, 575, 867, 1507, 2044
TaqI TCGA 8 cut(s) 60, 359, 366, 1048, 1431, 1841, 2394, 2485
TatI WGTACW 2 cut(s) 1797, 2426
TauI GCSGC 6 cut(s) 19, 238, 272, 277, 412, 2282
Tru1I TTAA 4 cut(s) 1202, 1287, 1536, 2157
Tru9I TTAA 4 cut(s) 1202, 1287, 1536, 2157
TscAI CASTG 3 cut(s) 1195, 1977, 2110
TseFI GTSAC 5 cut(s) 387, 576, 865, 1379, 2387
TseI GCWGC 7 cut(s) 19, 166, 227, 230, 911, 1154, 2251
Tsp45I GTSAC 5 cut(s) 387, 576, 865, 1379, 2387
TspDTI ATGAA 8 cut(s) 70, 108, 114, 711, 918, 1131, 1647, 2022
TspGWI ACGGA 5 cut(s) 20, 199, 791, 1853, 2498
TspRI CASTG 3 cut(s) 1195, 1977, 2110
Tth111I GACNNNGTC 1 cut(s) 574
Van91I CCANNNNNTGG 2 cut(s) 1036, 1926
VpaK11BI GGWCC 4 cut(s) 1724, 1876, 1978, 1984
XagI CCTNNNNNAGG 1 cut(s) 379
XapI RAATTY 1 cut(s) 77
XbaI TCTAGA 1 cut(s) 1295
XceI RCATGY 3 cut(s) 2128, 2209, 2433
XcmI CCANNNNNNNNNTGG 1 cut(s) 2079
XmaJI CCTAGG 1 cut(s) 752
XmnI GAANNNNTTC 2 cut(s) 1837, 2454
XspI CTAG 5 cut(s) 405, 627, 753, 822, 1296
ZraI GACGTC 1 cut(s) 402
Zsp2I ATGCAT 2 cut(s) 625, 2130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.