Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

6787261 .. 6789356

Gene Structure 2096 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g06780.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGGTTCAAATGGTGCTGTTGCTGACACCAACTACAGAGAAAATAAAACAATAGAAACCCATGATCAATACCTGCAGGAAGGAGTGAGACACTTGTGCGAAAGAGGACTGACTAGAGTGCCAACAAAGTACATACTGCCCAAGGAGGAACGACCCAATTCAGCCATGGGAGGAGAGACGACGATTCTCAAGTTACCGGTTATTGATTTCACTCGGTTGCAAGACTCCAGCAGCAGATCTCAAACATTGAACTCCCTCGCAAAAGCTTGCGAAGAATTTGGAATTTTTCAGTTGATAAACCATGGTATCAAAGATGAAGTTATTTCCACAATGACTGATGTAAGTAAAAGGTTCTTTGACCTTCCCTTCGAAGAGAGATCAAAGTACATGTCAAATGATATTGCTTCCCCGGCAAGGTATGGAACAAGCTTTAACCAAAACAATGATGCAGTGTTCTGCTGGAGAGACTTTCTCAAGCTTAGTTGCAACCCTTTATCAGACAGTGTTCCTTTTTGGCCATCCTCTCCTGTAGACCTAAGGGAAACAGTAGTGAACTACTCAAAGAGCACCAATTTTTTGTATCTAATGATGATGGAGGCTGTCCTGGAGAGCCTTGGGTTGATGAAAACCACAAAGAGTTCAAGTACAGAGAAAATAGACACCAAGACCAGTAGTTTAGAGGAATTTGAAGATGGAAGCCAACTGATTGTGGTGAACTGCTATCCTGCATGCCCTGAACCTGAATTAACCCTAGGCATGCCACCGCATTCTGATTATGGCATCCTCACTCTTCTCCTTCAAGATCAAGTCGAAGGTCTTCAAATACAGCACCAAGGAAAATGGGTGACCGTCGAACCACTTCCGAATTCATTCATCGTCAACGTCGGTGATCATCTTGAGATATTTAGCAATGGGAGATACAAGAGCGTGCTGCATAGGGTTGTTGTCAACTCATCCAAGTCTCGAATCTCTGTTGCTTCATTGCACAGCCTGCCGTTCGACGCCGTCGTTCGGCCCTCACCTAAACTCGTTGACGAAGCCAACCCTACTCGTTACAGGGACACAGACTTTGCCAATTTTCTTGAGTATATTGCTTCATGTGACCACCAGACGAAGAGTAAGAGTTTCTTGGAATCGAGGAAGCTGACTGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

385

Amino Acids

43.32

Weight (kDa)

5.48

Isoelectric Point (pI)

47.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	65 - 173	6e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	234 - 301	8e-23	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	531
AciI	CCGC	1 cut(s)	764
AcoI	YGGCCR	1 cut(s)	515
AcsI	RAATTY	4 cut(s)	275, 282, 683, 865
AcyI	GRCGYC	1 cut(s)	1002
AfaI	GTAC	3 cut(s)	131, 386, 646
AfiI	CCNNNNNNNGG	2 cut(s)	414, 1011
AflIII	ACRYGT	1 cut(s)	387
AgeI	ACCGGT	1 cut(s)	196
AgsI	TTSAA	6 cut(s)	9, 250, 642, 689, 800, 821
AjnI	CCWGG	1 cut(s)	603
AluBI	AGCT	4 cut(s)	266, 429, 478, 1144
AluI	AGCT	4 cut(s)	266, 429, 478, 1144
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	4 cut(s)	82, 170, 459, 966
AoxI	GGCC	2 cut(s)	515, 1013
ApeKI	GCWGC	2 cut(s)	231, 931
ApoI	RAATTY	4 cut(s)	275, 282, 683, 865
ArsI	GACNNNNNNTTYG	6 cut(s)	350, 374, 382, 406, 1052, 1084
AsiGI	ACCGGT	1 cut(s)	196
Asp700I	GAANNNNTTC	3 cut(s)	816, 858, 869
AspA2I	CCTAGG	1 cut(s)	751
AspS9I	GGNCC	1 cut(s)	1014
AsuC2I	CCSGG	1 cut(s)	410
AsuHPI	GGTGA	4 cut(s)	724, 856, 899, 1011
AsuII	TTCGAA	1 cut(s)	369
AvrII	CCTAGG	1 cut(s)	751
AxyI	CCTNAGG	1 cut(s)	536
BaeI	ACNNNNGTAYC	2 cut(s)	289, 322
BalI	TGGCCA	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	809
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	2 cut(s)	243, 918
BccI	CCATC	3 cut(s)	526, 586, 686
BceAI	ACGGC	2 cut(s)	979, 989
BciT130I	CCWGG	1 cut(s)	605
BclI	TGATCA	2 cut(s)	64, 889
BcnI	CCSGG	1 cut(s)	410
BcoDI	GTCTC	4 cut(s)	82, 170, 459, 966
BfaI	CTAG	2 cut(s)	114, 752
BfmI	CTRYAG	3 cut(s)	34, 74, 528
BfuAI	ACCTGC	1 cut(s)	81
BglII	AGATCT	1 cut(s)	236
BisI	GCNGC	2 cut(s)	232, 932
BlnI	CCTAGG	1 cut(s)	751
BlsI	GCNGC	2 cut(s)	233, 933
Bme1390I	CCNGG	2 cut(s)	410, 605
BmgT120I	GGNCC	1 cut(s)	1014
BmrFI	CCNGG	2 cut(s)	410, 605
BmsI	GCATC	2 cut(s)	436, 789
BpiI	GAAGAC	1 cut(s)	809
BplI	GAGNNNNNCTC	2 cut(s)	456, 488
BpmI	CTGGAG	3 cut(s)	211, 481, 626
Bpu14I	TTCGAA	1 cut(s)	369
BpuEI	CTTGAG	4 cut(s)	173, 458, 917, 1103
BpuMI	CCSGG	1 cut(s)	410
BsaHI	GRCGYC	1 cut(s)	1002
BsaJI	CCNNGG	7 cut(s)	141, 165, 301, 408, 613, 751, 832
BsaWI	WCCGGW	1 cut(s)	196
Bsc4I	CCNNNNNNNGG	2 cut(s)	414, 1011
Bse118I	RCCGGY	1 cut(s)	196
Bse1I	ACTGG	1 cut(s)	669
Bse21I	CCTNAGG	1 cut(s)	536
Bse3DI	GCAATG	2 cut(s)	916, 980
BseBI	CCWGG	1 cut(s)	605
BseDI	CCNNGG	7 cut(s)	141, 165, 301, 408, 613, 751, 832
BseGI	GGATG	3 cut(s)	518, 780, 953
BseLI	CCNNNNNNNGG	2 cut(s)	414, 1011
BseMI	GCAATG	2 cut(s)	916, 980
BseNI	ACTGG	1 cut(s)	669
BseRI	GAGGAG	1 cut(s)	186
BseXI	GCAGC	2 cut(s)	243, 918
BshFI	GGCC	2 cut(s)	517, 1015
BshTI	ACCGGT	1 cut(s)	196
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	197, 410
BslFI	GGGAC	1 cut(s)	1073
BslI	CCNNNNNNNGG	2 cut(s)	414, 1011
BsmAI	GTCTC	4 cut(s)	82, 170, 459, 966
BsmBI	CGTCTC	1 cut(s)	170
BsmFI	GGGAC	1 cut(s)	1073
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	517, 1015
Bsp119I	TTCGAA	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	5 cut(s)	64, 236, 377, 802, 889
Bsp19I	CCATGG	2 cut(s)	165, 301
BspACI	CCGC	1 cut(s)	764
BspANI	GGCC	2 cut(s)	517, 1015
BspMAI	CTGCAG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	369
BsrDI	GCAATG	2 cut(s)	916, 980
BsrFI	RCCGGY	1 cut(s)	196
BsrI	ACTGG	1 cut(s)	669
BssAI	RCCGGY	1 cut(s)	196
BssECI	CCNNGG	7 cut(s)	141, 165, 301, 408, 613, 751, 832
BssMI	GATC	5 cut(s)	64, 236, 377, 802, 889
BssNI	GRCGYC	1 cut(s)	1002
BssT1I	CCWWGG	6 cut(s)	141, 165, 301, 613, 751, 832
Bst2UI	CCWGG	1 cut(s)	605
Bst4CI	ACNGT	3 cut(s)	503, 547, 850
Bst6I	CTCTTC	3 cut(s)	366, 795, 1109
BstACI	GRCGYC	1 cut(s)	1002
BstAPI	GCANNNNNTGC	1 cut(s)	991
BstBI	TTCGAA	1 cut(s)	369
BstC8I	GCNNGC	5 cut(s)	268, 730, 758, 929, 992
BstDEI	CTNAG	2 cut(s)	479, 536
BstDSI	CCRYGG	2 cut(s)	165, 301
BstEII	GGTNACC	1 cut(s)	844
BstF5I	GGATG	3 cut(s)	518, 780, 953
BstKTI	GATC	5 cut(s)	67, 239, 380, 805, 892
BstMAI	GTCTC	4 cut(s)	82, 170, 459, 966
BstMBI	GATC	5 cut(s)	64, 236, 377, 802, 889
BstMWI	GCNNNNNNNGC	2 cut(s)	410, 991
BstNI	CCWGG	1 cut(s)	605
BstNSI	RCATGY	3 cut(s)	391, 732, 760
BstPI	GGTNACC	1 cut(s)	844
BstSCI	CCNGG	2 cut(s)	408, 603
BstSFI	CTRYAG	3 cut(s)	34, 74, 528
BstV1I	GCAGC	2 cut(s)	243, 918
BstV2I	GAAGAC	1 cut(s)	809
BstX2I	RGATCY	1 cut(s)	236
BstYI	RGATCY	1 cut(s)	236
Bsu36I	CCTNAGG	1 cut(s)	536
BsuRI	GGCC	2 cut(s)	517, 1015
BtgI	CCRYGG	2 cut(s)	165, 301
BtsCI	GGATG	3 cut(s)	518, 780, 953
BtsI	GCAGTG	1 cut(s)	456
BtsIMutI	CAGTG	2 cut(s)	456, 508
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	5 cut(s)	268, 730, 758, 929, 992
Cfr10I	RCCGGY	1 cut(s)	196
Cfr13I	GGNCC	1 cut(s)	1014
CseI	GACGC	1 cut(s)	1010
Csp6I	GTAC	3 cut(s)	130, 385, 645
CspAI	ACCGGT	1 cut(s)	196
CviAII	CATG	7 cut(s)	62, 166, 302, 388, 729, 757, 1098
CviQI	GTAC	3 cut(s)	130, 385, 645
DdeI	CTNAG	2 cut(s)	479, 536
DpnI	GATC	5 cut(s)	66, 238, 379, 804, 891
DpnII	GATC	5 cut(s)	64, 236, 377, 802, 889
EaeI	YGGCCR	1 cut(s)	515
Eam1104I	CTCTTC	3 cut(s)	366, 795, 1109
EarI	CTCTTC	3 cut(s)	366, 795, 1109
Eco130I	CCWWGG	6 cut(s)	141, 165, 301, 613, 751, 832
Eco81I	CCTNAGG	1 cut(s)	536
Eco91I	GGTNACC	1 cut(s)	844
EcoO65I	GGTNACC	1 cut(s)	844
EcoRI	GAATTC	1 cut(s)	865
EcoRII	CCWGG	1 cut(s)	603
EcoT14I	CCWWGG	6 cut(s)	141, 165, 301, 613, 751, 832
ErhI	CCWWGG	6 cut(s)	141, 165, 301, 613, 751, 832
Esp3I	CGTCTC	1 cut(s)	170
FaeI	CATG	7 cut(s)	65, 169, 305, 391, 732, 760, 1101
FalI	AAGNNNNNCTT	2 cut(s)	1112, 1144
FaqI	GGGAC	1 cut(s)	1073
FatI	CATG	7 cut(s)	61, 165, 301, 387, 728, 756, 1097
FbaI	TGATCA	2 cut(s)	64, 889
FblI	GTMKAC	1 cut(s)	531
Fnu4HI	GCNGC	2 cut(s)	232, 932
FokI	GGATG	3 cut(s)	505, 767, 940
Fsp4HI	GCNGC	2 cut(s)	232, 932
FspBI	CTAG	2 cut(s)	114, 752
GluI	GCNGC	2 cut(s)	232, 932
GsuI	CTGGAG	3 cut(s)	211, 481, 626
HaeIII	GGCC	2 cut(s)	517, 1015
HapII	CCGG	2 cut(s)	197, 410
HgaI	GACGC	1 cut(s)	1010
Hin1I	GRCGYC	1 cut(s)	1002
Hin1II	CATG	7 cut(s)	65, 169, 305, 391, 732, 760, 1101
HincII	GTYRAC	3 cut(s)	880, 949, 1033
HindII	GTYRAC	3 cut(s)	880, 949, 1033
HindIII	AAGCTT	3 cut(s)	264, 427, 476
HinfI	GANTC	4 cut(s)	184, 224, 966, 1133
HpaII	CCGG	2 cut(s)	197, 410
HphI	GGTGA	4 cut(s)	724, 856, 899, 1011
Hpy166II	GTNNAC	6 cut(s)	532, 553, 715, 880, 949, 1033
Hpy188I	TCNGA	3 cut(s)	499, 772, 864
Hpy188III	TCNNGA	4 cut(s)	800, 896, 963, 1082
Hpy8I	GTNNAC	6 cut(s)	532, 553, 715, 880, 949, 1033
Hpy99I	CGWCG	5 cut(s)	184, 854, 887, 1004, 1010
HpyAV	CCTTC	5 cut(s)	74, 371, 376, 806, 806
HpyCH4III	ACNGT	3 cut(s)	503, 547, 850
HpyCH4IV	ACGT	1 cut(s)	882
HpyCH4V	TGCA	7 cut(s)	76, 220, 449, 486, 728, 934, 985
HpyF10VI	GCNNNNNNNGC	2 cut(s)	410, 991
HpyF3I	CTNAG	2 cut(s)	479, 536
HpySE526I	ACGT	1 cut(s)	882
Hsp92I	GRCGYC	1 cut(s)	1002
Hsp92II	CATG	7 cut(s)	65, 169, 305, 391, 732, 760, 1101
Ksp22I	TGATCA	2 cut(s)	64, 889
Kzo9I	GATC	5 cut(s)	64, 236, 377, 802, 889
Lsp1109I	GCAGC	2 cut(s)	243, 918
LweI	GCATC	2 cut(s)	436, 789
MaeI	CTAG	2 cut(s)	114, 752
MaeII	ACGT	1 cut(s)	882
MaeIII	GTNAC	4 cut(s)	192, 844, 1052, 1100
MalI	GATC	5 cut(s)	66, 238, 379, 804, 891
MboI	GATC	5 cut(s)	64, 236, 377, 802, 889
MboII	GAAGA	6 cut(s)	284, 383, 701, 782, 809, 1126
MflI	RGATCY	1 cut(s)	236
MhlI	GDGCHC	1 cut(s)	569
MlsI	TGGCCA	1 cut(s)	517
MluCI	AATT	8 cut(s)	157, 275, 282, 571, 683, 743, 865, 1075
MluNI	TGGCCA	1 cut(s)	517
MlyI	GAGTC	1 cut(s)	218
Mox20I	TGGCCA	1 cut(s)	517
MroXI	GAANNNNTTC	3 cut(s)	816, 858, 869
MscI	TGGCCA	1 cut(s)	517
MseI	TTAA	2 cut(s)	432, 746
Msp20I	TGGCCA	1 cut(s)	517
MspI	CCGG	2 cut(s)	197, 410
MspR9I	CCNGG	2 cut(s)	410, 605
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	1 cut(s)	605
MwoI	GCNNNNNNNGC	2 cut(s)	410, 991
NciI	CCSGG	1 cut(s)	410
NcoI	CCATGG	2 cut(s)	165, 301
NdeII	GATC	5 cut(s)	64, 236, 377, 802, 889
NlaIII	CATG	7 cut(s)	65, 169, 305, 391, 732, 760, 1101
NmuCI	GTSAC	2 cut(s)	844, 1100
NspI	RCATGY	3 cut(s)	391, 732, 760
NspV	TTCGAA	1 cut(s)	369
PaeI	GCATGC	2 cut(s)	732, 760
PciI	ACATGT	1 cut(s)	387
PcsI	WCGNNNNNNNCGW	1 cut(s)	1005
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	3 cut(s)	816, 858, 869
PfeI	GAWTC	3 cut(s)	184, 966, 1133
PflFI	GACNNNGTC	1 cut(s)	1004
PfoI	TCCNGGA	1 cut(s)	603
PinAI	ACCGGT	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	233, 933
PleI	GAGTC	1 cut(s)	218
PpsI	GAGTC	1 cut(s)	218
PscI	ACATGT	1 cut(s)	387
Psp6I	CCWGG	1 cut(s)	603
PspEI	GGTNACC	1 cut(s)	844
PspGI	CCWGG	1 cut(s)	603
PspPI	GGNCC	1 cut(s)	1014
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	236
PsyI	GACNNNGTC	1 cut(s)	1004
RsaI	GTAC	3 cut(s)	131, 386, 646
RsaNI	GTAC	3 cut(s)	130, 385, 645
SaqAI	TTAA	2 cut(s)	432, 746
SatI	GCNGC	2 cut(s)	232, 932
Sau3AI	GATC	5 cut(s)	64, 236, 377, 802, 889
Sau96I	GGNCC	1 cut(s)	1014
SbfI	CCTGCAGG	1 cut(s)	78
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	2 cut(s)	410, 605
SdaI	CCTGCAGG	1 cut(s)	78
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	2 cut(s)	436, 789
SfcI	CTRYAG	3 cut(s)	34, 74, 528
SfuI	TTCGAA	1 cut(s)	369
SmlI	CTYRAG	4 cut(s)	188, 473, 896, 1082
SmoI	CTYRAG	4 cut(s)	188, 473, 896, 1082
SphI	GCATGC	2 cut(s)	732, 760
Sse8387I	CCTGCAGG	1 cut(s)	78
Sse9I	AATT	8 cut(s)	157, 275, 282, 571, 683, 743, 865, 1075
SsiI	CCGC	1 cut(s)	764
SspMI	CTAG	2 cut(s)	114, 752
StyD4I	CCNGG	2 cut(s)	408, 603
StyI	CCWWGG	6 cut(s)	141, 165, 301, 613, 751, 832
TaaI	ACNGT	3 cut(s)	503, 547, 850
TaiI	ACGT	1 cut(s)	885
TaqI	TCGA	6 cut(s)	369, 810, 852, 964, 999, 1136
TasI	AATT	8 cut(s)	157, 275, 282, 571, 683, 743, 865, 1075
TatI	WGTACW	3 cut(s)	129, 384, 644
TfiI	GAWTC	3 cut(s)	184, 966, 1133
Tru1I	TTAA	2 cut(s)	432, 746
Tru9I	TTAA	2 cut(s)	432, 746
TscAI	CASTG	2 cut(s)	456, 508
TseFI	GTSAC	2 cut(s)	844, 1100
TseI	GCWGC	2 cut(s)	231, 931
Tsp45I	GTSAC	2 cut(s)	844, 1100
TspDTI	ATGAA	6 cut(s)	330, 638, 858, 862, 969, 1086
TspRI	CASTG	2 cut(s)	456, 508
Tth111I	GACNNNGTC	1 cut(s)	1004
XapI	RAATTY	4 cut(s)	275, 282, 683, 865
XceI	RCATGY	3 cut(s)	391, 732, 760
XcmI	CCANNNNNNNNNTGG	1 cut(s)	163
XmaJI	CCTAGG	1 cut(s)	751
XmiI	GTMKAC	1 cut(s)	531
XmnI	GAANNNNTTC	3 cut(s)	816, 858, 869
XspI	CTAG	2 cut(s)	114, 752

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.