Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004870.1

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

8619 .. 10958

Gene Structure 2340 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004870.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

atgtctccagcaatggcagctttgacaactgagaatgaggagagccagtaccagaatggagtgaagtgcttgcatgagaatggaataagcaaagttccaagcaagtacatactgcccgtattggagcgacccggtattacaaatcacgagcaagcaaatgtaaccaagaataatcttaagctccccatcattgacttccaagaattgcagggtcccaatagaccccaagtccttcagtccctcgccaatgcttgtgaacaatacggcttctttcagctggtaaaccatgacattccaagcgatgttataagcaatatgatcgaagtgggcacaaagttctttgagctaccgtttgaggagagagccaagtacatgtcctcggatatgcgagctcctgttcggtatggaactagctttaaccagaacaaggataaggtgttttgttggagggacttcttgaagctattgtgccatcccctaccagacgttcttcctcactggccttcttcacctgtcggcataaggaatttggcggctacctacgcaaaagaaaccaaatacttattcctaatgctaatggaggccatatttgagagcttaggacttgcggattcatcagctgccaagaagaacacgacagaagaagatgaggtgttgaaagaattcgaagatggaagccagctaatggttgtcaattgctacccgccatgcccagaacctgatctaaccctagggatgcctcctcactctgactatggattcctcacacttcttctccaagatgaggtagaaggacttcaaattcaattccaagataaatgggttaccgttgaaccaatagccaactctttcgtggtcaacgttggtgatcatcttgagatatttagcaacggaaaatacaagagtgttctacacagagtcctggtgaactctagaaaagataggatttcagtggcttctctgcacagtcttcctttcatgcgccccgttggcccatcaccaaaacttgtggatgaatcaaatccaaggcgatacaaagaaaccgattttgccaattttctagagtatatttcatcccgtgagcataataagaagaatttcctcgagtccaggaaattgacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

374

Amino Acids

42.56

Weight (kDa)

5.65

Isoelectric Point (pI)

49.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
AccB7I	CCANNNNNTGG	1 cut(s)	685
AciI	CCGC	3 cut(s)	533, 608, 704
AclI	AACGTT	1 cut(s)	861
AcsI	RAATTY	4 cut(s)	526, 662, 801, 1096
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	3 cut(s)	50, 107, 371
AfiI	CCNNNNNNNGG	3 cut(s)	427, 685, 784
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	5 cut(s)	460, 658, 800, 806, 833
AhdI	GACNNNNNGTC	1 cut(s)	227
AjnI	CCWGG	2 cut(s)	921, 1109
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	9
AlwNI	CAGNNNCTG	1 cut(s)	719
Ama87I	CYCGRG	1 cut(s)	1103
AoxI	GGCC	3 cut(s)	500, 582, 991
ApeKI	GCWGC	2 cut(s)	17, 620
ApoI	RAATTY	4 cut(s)	526, 662, 801, 1096
Asp700I	GAANNNNTTC	3 cut(s)	662, 795, 1097
AspA2I	CCTAGG	1 cut(s)	730
AspLEI	GCGC	1 cut(s)	984
AspS9I	GGNCC	2 cut(s)	212, 992
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	4 cut(s)	501, 878, 937, 990
AsuII	TTCGAA	1 cut(s)	666
AvaI	CYCGRG	1 cut(s)	1103
AvaII	GGWCC	1 cut(s)	212
AvrII	CCTAGG	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	780, 812
BauI	CACGAG	1 cut(s)	146
BbsI	GAAGAC	1 cut(s)	962
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	2 cut(s)	29, 607
BccI	CCATC	4 cut(s)	194, 480, 665, 1003
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BciT130I	CCWGG	2 cut(s)	923, 1111
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	4 cut(s)	411, 731, 933, 1061
BfrI	CTTAAG	1 cut(s)	176
BglI	GCCNNNNNGGC	1 cut(s)	990
BisI	GCNGC	3 cut(s)	18, 534, 621
BlnI	CCTAGG	1 cut(s)	730
BlsI	GCNGC	3 cut(s)	19, 535, 622
Bme1390I	CCNGG	3 cut(s)	132, 923, 1111
Bme18I	GGWCC	1 cut(s)	212
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmeT110I	CYCGRG	1 cut(s)	1103
BmgT120I	GGNCC	2 cut(s)	212, 992
BmiI	GGNNCC	2 cut(s)	213, 214
BmrFI	CCNGG	3 cut(s)	132, 923, 1111
BmsI	GCATC	1 cut(s)	726
BpiI	GAAGAC	1 cut(s)	962
Bpu10I	CCTNAGC	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	3 cut(s)	378, 730, 1025
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 759, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 685, 784
Bse1I	ACTGG	2 cut(s)	46, 503
Bse3DI	GCAATG	1 cut(s)	18
BseBI	CCWGG	2 cut(s)	923, 1111
BseDI	CCNNGG	3 cut(s)	378, 730, 1025
BseGI	GGATG	4 cut(s)	472, 741, 1018, 1073
BseLI	CCNNNNNNNGG	3 cut(s)	427, 685, 784
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	2 cut(s)	46, 503
BseRI	GAGGAG	3 cut(s)	53, 371, 732
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	2 cut(s)	29, 607
BsgI	GTGCAG	1 cut(s)	947
BshFI	GGCC	3 cut(s)	502, 584, 993
BsiHKAI	GWGCWC	1 cut(s)	394
BsiHKCI	CYCGRG	1 cut(s)	1103
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	3 cut(s)	198, 223, 464
BslI	CCNNNNNNNGG	3 cut(s)	427, 685, 784
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	198, 223, 464
BsnI	GGCC	3 cut(s)	502, 584, 993
BsoBI	CYCGRG	1 cut(s)	1103
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	332, 394
Bsp143I	GATC	3 cut(s)	318, 721, 868
BspACI	CCGC	3 cut(s)	533, 608, 704
BspANI	GGCC	3 cut(s)	502, 584, 993
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	213, 214
BspT104I	TTCGAA	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	2 cut(s)	46, 503
BssECI	CCNNGG	3 cut(s)	378, 730, 1025
BssMI	GATC	3 cut(s)	318, 721, 868
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	2 cut(s)	730, 1025
Bst2BI	CACGAG	1 cut(s)	146
Bst2UI	CCWGG	2 cut(s)	923, 1111
Bst4CI	ACNGT	3 cut(s)	351, 829, 968
BstAFI	CTTAAG	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	666
BstC8I	GCNNGC	4 cut(s)	71, 153, 390, 680
BstDEI	CTNAG	2 cut(s)	30, 598
BstEII	GGTNACC	1 cut(s)	823
BstF5I	GGATG	4 cut(s)	472, 741, 1018, 1073
BstHHI	GCGC	1 cut(s)	984
BstKTI	GATC	3 cut(s)	321, 724, 871
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	318, 721, 868
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 542, 990
BstNI	CCWGG	2 cut(s)	923, 1111
BstNSI	RCATGY	1 cut(s)	376
BstPI	GGTNACC	1 cut(s)	823
BstSCI	CCNGG	3 cut(s)	130, 921, 1109
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	2 cut(s)	29, 607
BstV2I	GAAGAC	1 cut(s)	962
BsuRI	GGCC	3 cut(s)	502, 584, 993
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	4 cut(s)	472, 741, 1018, 1073
BtsIMutI	CAGTG	2 cut(s)	496, 957
Cac8I	GCNNGC	4 cut(s)	71, 153, 390, 680
CaiI	CAGNNNCTG	1 cut(s)	719
CfoI	GCGC	1 cut(s)	984
Cfr13I	GGNCC	2 cut(s)	212, 992
Csp6I	GTAC	3 cut(s)	49, 106, 370
CspCI	CAANNNNNGTGG	2 cut(s)	990, 1025
CviAII	CATG	5 cut(s)	74, 287, 373, 708, 979
CviQI	GTAC	3 cut(s)	49, 106, 370
DdeI	CTNAG	2 cut(s)	30, 598
DpnI	GATC	3 cut(s)	320, 723, 870
DpnII	GATC	3 cut(s)	318, 721, 868
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	2 cut(s)	730, 1025
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	218
Eco88I	CYCGRG	1 cut(s)	1103
Eco91I	GGTNACC	1 cut(s)	823
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	823
EcoRI	GAATTC	1 cut(s)	662
EcoRII	CCWGG	2 cut(s)	921, 1109
EcoT14I	CCWWGG	2 cut(s)	730, 1025
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	2 cut(s)	730, 1025
FaeI	CATG	5 cut(s)	77, 290, 376, 711, 982
FaqI	GGGAC	3 cut(s)	198, 223, 464
FatI	CATG	5 cut(s)	73, 286, 372, 707, 978
FauI	CCCGC	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	868
Fnu4HI	GCNGC	3 cut(s)	18, 534, 621
FokI	GGATG	4 cut(s)	459, 748, 1025, 1060
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	3 cut(s)	18, 534, 621
FspBI	CTAG	4 cut(s)	411, 731, 933, 1061
GlaI	GCGC	1 cut(s)	983
GluI	GCNGC	3 cut(s)	18, 534, 621
HaeIII	GGCC	3 cut(s)	502, 584, 993
HapII	CCGG	1 cut(s)	132
HhaI	GCGC	1 cut(s)	984
Hin1II	CATG	5 cut(s)	77, 290, 376, 711, 982
Hin6I	GCGC	1 cut(s)	982
HinP1I	GCGC	1 cut(s)	982
HincII	GTYRAC	1 cut(s)	859
HindII	GTYRAC	1 cut(s)	859
HinfI	GANTC	5 cut(s)	611, 759, 918, 1016, 1106
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	4 cut(s)	501, 878, 937, 990
Hpy166II	GTNNAC	4 cut(s)	257, 283, 859, 928
Hpy188I	TCNGA	2 cut(s)	382, 751
Hpy188III	TCNNGA	5 cut(s)	146, 457, 875, 933, 1061
Hpy8I	GTNNAC	4 cut(s)	257, 283, 859, 928
HpyAV	CCTTC	3 cut(s)	242, 513, 785
HpyCH4III	ACNGT	3 cut(s)	351, 829, 968
HpyCH4IV	ACGT	2 cut(s)	486, 861
HpyCH4V	TGCA	3 cut(s)	73, 208, 964
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 542, 990
HpyF3I	CTNAG	2 cut(s)	30, 598
HpySE526I	ACGT	2 cut(s)	486, 861
Hsp92II	CATG	5 cut(s)	77, 290, 376, 711, 982
HspAI	GCGC	1 cut(s)	982
KflI	GGGWCCC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	318, 721, 868
LmnI	GCTCC	3 cut(s)	124, 186, 397
Lsp1109I	GCAGC	2 cut(s)	29, 607
LweI	GCATC	1 cut(s)	726
MaeI	CTAG	4 cut(s)	411, 731, 933, 1061
MaeII	ACGT	2 cut(s)	486, 861
MaeIII	GTNAC	2 cut(s)	160, 823
MalI	GATC	3 cut(s)	320, 723, 870
MboI	GATC	3 cut(s)	318, 721, 868
MboII	GAAGA	9 cut(s)	482, 498, 640, 653, 656, 680, 764, 962, 1105
MfeI	CAATTG	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	332, 394
MluCI	AATT	9 cut(s)	203, 526, 662, 694, 801, 806, 1054, 1096, 1115
MlyI	GAGTC	2 cut(s)	927, 1115
MmeI	TCCRAC	1 cut(s)	425
MroXI	GAANNNNTTC	3 cut(s)	662, 795, 1097
MseI	TTAA	2 cut(s)	177, 417
MslI	CAYNNNNRTG	1 cut(s)	78
MspA1I	CMGCKG	2 cut(s)	277, 620
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	3 cut(s)	132, 923, 1111
MunI	CAATTG	1 cut(s)	694
MvaI	CCWGG	2 cut(s)	923, 1111
MwoI	GCNNNNNNNGC	3 cut(s)	17, 542, 990
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	318, 721, 868
NlaIII	CATG	5 cut(s)	77, 290, 376, 711, 982
NlaIV	GGNNCC	2 cut(s)	213, 214
NspI	RCATGY	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	666
PaeR7I	CTCGAG	1 cut(s)	1103
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	858
PdmI	GAANNNNTTC	3 cut(s)	662, 795, 1097
PfeI	GAWTC	3 cut(s)	611, 759, 1016
PflMI	CCANNNNNTGG	1 cut(s)	685
PfoI	TCCNGGA	1 cut(s)	1109
PkrI	GCNGC	3 cut(s)	19, 535, 622
PleI	GAGTC	2 cut(s)	926, 1114
PpsI	GAGTC	2 cut(s)	926, 1114
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	861
Psp5II	RGGWCCY	1 cut(s)	212
Psp6I	CCWGG	2 cut(s)	921, 1109
PspEI	GGTNACC	1 cut(s)	823
PspGI	CCWGG	2 cut(s)	921, 1109
PspN4I	GGNNCC	2 cut(s)	213, 214
PspPI	GGNCC	2 cut(s)	212, 992
PspPPI	RGGWCCY	1 cut(s)	212
PspXI	VCTCGAGB	1 cut(s)	1103
PstNI	CAGNNNCTG	1 cut(s)	719
PvuII	CAGCTG	2 cut(s)	277, 620
RsaI	GTAC	3 cut(s)	50, 107, 371
RsaNI	GTAC	3 cut(s)	49, 106, 370
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	394
SaqAI	TTAA	2 cut(s)	177, 417
SatI	GCNGC	3 cut(s)	18, 534, 621
Sau3AI	GATC	3 cut(s)	318, 721, 868
Sau96I	GGNCC	2 cut(s)	212, 992
SchI	GAGTC	2 cut(s)	927, 1115
ScrFI	CCNGG	3 cut(s)	132, 923, 1111
SduI	GDGCHC	2 cut(s)	332, 394
SfaNI	GCATC	1 cut(s)	726
Sfr274I	CTCGAG	1 cut(s)	1103
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	1 cut(s)	212
SlaI	CTCGAG	1 cut(s)	1103
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	3 cut(s)	176, 875, 1103
SmoI	CTYRAG	3 cut(s)	176, 875, 1103
Sse9I	AATT	9 cut(s)	203, 526, 662, 694, 801, 806, 1054, 1096, 1115
SsiI	CCGC	3 cut(s)	533, 608, 704
SspMI	CTAG	4 cut(s)	411, 731, 933, 1061
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	3 cut(s)	130, 921, 1109
StyI	CCWWGG	2 cut(s)	730, 1025
TaaI	ACNGT	3 cut(s)	351, 829, 968
TaiI	ACGT	2 cut(s)	489, 864
TaqI	TCGA	3 cut(s)	321, 666, 1104
TasI	AATT	9 cut(s)	203, 526, 662, 694, 801, 806, 1054, 1096, 1115
TatI	WGTACW	2 cut(s)	105, 369
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	3 cut(s)	611, 759, 1016
Tru1I	TTAA	2 cut(s)	177, 417
Tru9I	TTAA	2 cut(s)	177, 417
TscAI	CASTG	2 cut(s)	503, 957
TseI	GCWGC	2 cut(s)	17, 620
TspDTI	ATGAA	4 cut(s)	603, 967, 1029, 1062
TspGWI	ACGGA	1 cut(s)	906
TspRI	CASTG	2 cut(s)	503, 957
Van91I	CCANNNNNTGG	1 cut(s)	685
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	4 cut(s)	526, 662, 801, 1096
XbaI	TCTAGA	2 cut(s)	932, 1060
XceI	RCATGY	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	53, 850
XhoI	CTCGAG	1 cut(s)	1103
XmaJI	CCTAGG	1 cut(s)	730
XmnI	GAANNNNTTC	3 cut(s)	662, 795, 1097
XspI	CTAG	4 cut(s)	411, 731, 933, 1061

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.