Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000393.1

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

12758 .. 13392

Gene Structure 635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000393.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 531 bp

atggaaactacaaagagttctggtacagagaaaatagacaccaggaccagtactttagatgaatttgaagatggaagccaactgattgtggtgaactgctaccctgcatgccctgaacctgatttaaccctaggcattccacctcattctgattatggcatcctcactcttctccttcaagaccgagtccagggtcttcaaatacagcaccaaggaaaatgggtgaccgtggaaccacttccgaattcattcatcgtcaacgttggtgatcatcttgagatatttagcaatgggagatacaaaagcgtgctgcatagggttgttgtcaactcatccaagtctcgaatctctgttgcttcattgcacagcctgccattcgacaccgttgttcgcccttcacctaaactcgtcgacgaagccaaccctgttcgttacagggacacagactttgccaattttctcgagtatattgcttcgcgtgaccaccagacgaacagtaagagtttcttgcaatcgaggaaattgacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

176

Amino Acids

19.77

Weight (kDa)

6.05

Isoelectric Point (pI)

33.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	411
AccII	CGCG	1 cut(s)	478
AclI	AACGTT	1 cut(s)	261
AcsI	RAATTY	2 cut(s)	62, 244
AfaI	GTAC	2 cut(s)	25, 52
AfiI	CCNNNNNNNGG	1 cut(s)	190
AgsI	TTSAA	3 cut(s)	68, 179, 200
AjnI	CCWGG	2 cut(s)	41, 189
Alw26I	GTCTC	1 cut(s)	345
Ama87I	CYCGRG	1 cut(s)	461
ApeKI	GCWGC	1 cut(s)	310
ApoI	RAATTY	2 cut(s)	62, 244
ArsI	GACNNNNNNTTYG	2 cut(s)	431, 463
Asp700I	GAANNNNTTC	2 cut(s)	237, 248
AspA2I	CCTAGG	1 cut(s)	130
AspS9I	GGNCC	1 cut(s)	45
AsuHPI	GGTGA	4 cut(s)	103, 235, 278, 390
AvaI	CYCGRG	1 cut(s)	461
AvaII	GGWCC	1 cut(s)	45
AvrII	CCTAGG	1 cut(s)	130
BbsI	GAAGAC	1 cut(s)	188
BbvI	GCAGC	1 cut(s)	297
BccI	CCATC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	452, 486
BciT130I	CCWGG	2 cut(s)	43, 191
BclI	TGATCA	1 cut(s)	268
BcoDI	GTCTC	1 cut(s)	345
BfaI	CTAG	1 cut(s)	131
BisI	GCNGC	1 cut(s)	311
BlnI	CCTAGG	1 cut(s)	130
BlsI	GCNGC	1 cut(s)	312
BmcAI	AGTACT	1 cut(s)	52
Bme1390I	CCNGG	2 cut(s)	43, 191
Bme18I	GGWCC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	461
BmgT120I	GGNCC	1 cut(s)	45
BmiI	GGNNCC	1 cut(s)	234
BmrFI	CCNGG	2 cut(s)	43, 191
BmsI	GCATC	1 cut(s)	168
BpiI	GAAGAC	1 cut(s)	188
BpuEI	CTTGAG	1 cut(s)	296
BsaJI	CCNNGG	4 cut(s)	130, 190, 211, 228
Bsc4I	CCNNNNNNNGG	1 cut(s)	190
Bse1I	ACTGG	1 cut(s)	48
Bse3DI	GCAATG	2 cut(s)	295, 359
BseBI	CCWGG	2 cut(s)	43, 191
BseDI	CCNNGG	4 cut(s)	130, 190, 211, 228
BseGI	GGATG	2 cut(s)	159, 332
BseLI	CCNNNNNNNGG	1 cut(s)	190
BseMI	GCAATG	2 cut(s)	295, 359
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	297
Bsh1236I	CGCG	1 cut(s)	478
BsiHKCI	CYCGRG	1 cut(s)	461
BslFI	GGGAC	1 cut(s)	452
BslI	CCNNNNNNNGG	1 cut(s)	190
BsmAI	GTCTC	1 cut(s)	345
BsmFI	GGGAC	1 cut(s)	452
BsmI	GAATGC	1 cut(s)	135
BsoBI	CYCGRG	1 cut(s)	461
Bsp143I	GATC	1 cut(s)	268
BspFNI	CGCG	1 cut(s)	478
BspLI	GGNNCC	1 cut(s)	234
BsrDI	GCAATG	2 cut(s)	295, 359
BsrI	ACTGG	1 cut(s)	48
BssECI	CCNNGG	4 cut(s)	130, 190, 211, 228
BssMI	GATC	1 cut(s)	268
BssT1I	CCWWGG	2 cut(s)	130, 211
Bst2UI	CCWGG	2 cut(s)	43, 191
Bst4CI	ACNGT	3 cut(s)	229, 385, 497
Bst6I	CTCTTC	1 cut(s)	174
BstAPI	GCANNNNNTGC	1 cut(s)	370
BstC8I	GCNNGC	3 cut(s)	109, 308, 371
BstDSI	CCRYGG	1 cut(s)	228
BstEII	GGTNACC	1 cut(s)	223
BstF5I	GGATG	2 cut(s)	159, 332
BstFNI	CGCG	1 cut(s)	478
BstKTI	GATC	1 cut(s)	271
BstMAI	GTCTC	1 cut(s)	345
BstMBI	GATC	1 cut(s)	268
BstMWI	GCNNNNNNNGC	1 cut(s)	370
BstNI	CCWGG	2 cut(s)	43, 191
BstNSI	RCATGY	1 cut(s)	111
BstPI	GGTNACC	1 cut(s)	223
BstSCI	CCNGG	2 cut(s)	41, 189
BstUI	CGCG	1 cut(s)	478
BstV1I	GCAGC	1 cut(s)	297
BstV2I	GAAGAC	1 cut(s)	188
BtgI	CCRYGG	1 cut(s)	228
BtsCI	GGATG	2 cut(s)	159, 332
Cac8I	GCNNGC	3 cut(s)	109, 308, 371
Cfr13I	GGNCC	1 cut(s)	45
Csp6I	GTAC	2 cut(s)	24, 51
CviAII	CATG	1 cut(s)	108
CviJI	RGCY	3 cut(s)	78, 369, 419
CviKI_1	RGCY	3 cut(s)	78, 369, 419
CviQI	GTAC	2 cut(s)	24, 51
DpnI	GATC	1 cut(s)	270
DpnII	GATC	1 cut(s)	268
Eam1104I	CTCTTC	1 cut(s)	174
EarI	CTCTTC	1 cut(s)	174
Eco130I	CCWWGG	2 cut(s)	130, 211
Eco47I	GGWCC	1 cut(s)	45
Eco88I	CYCGRG	1 cut(s)	461
Eco91I	GGTNACC	1 cut(s)	223
EcoO65I	GGTNACC	1 cut(s)	223
EcoRI	GAATTC	1 cut(s)	244
EcoRII	CCWGG	2 cut(s)	41, 189
EcoT14I	CCWWGG	2 cut(s)	130, 211
ErhI	CCWWGG	2 cut(s)	130, 211
FaeI	CATG	1 cut(s)	111
FaiI	YATR	4 cut(s)	109, 156, 315, 468
FalI	AAGNNNNNCTT	2 cut(s)	491, 523
FaqI	GGGAC	1 cut(s)	452
FatI	CATG	1 cut(s)	107
FbaI	TGATCA	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	411
Fnu4HI	GCNGC	1 cut(s)	311
FokI	GGATG	2 cut(s)	146, 319
Fsp4HI	GCNGC	1 cut(s)	311
FspBI	CTAG	1 cut(s)	131
GluI	GCNGC	1 cut(s)	311
Hin1II	CATG	1 cut(s)	111
HincII	GTYRAC	3 cut(s)	259, 328, 412
HindII	GTYRAC	3 cut(s)	259, 328, 412
HinfI	GANTC	2 cut(s)	186, 345
HphI	GGTGA	4 cut(s)	103, 235, 278, 390
Hpy166II	GTNNAC	4 cut(s)	94, 259, 328, 412
Hpy188I	TCNGA	2 cut(s)	151, 243
Hpy188III	TCNNGA	4 cut(s)	179, 275, 342, 461
Hpy8I	GTNNAC	4 cut(s)	94, 259, 328, 412
Hpy99I	CGWCG	2 cut(s)	413, 416
HpyAV	CCTTC	2 cut(s)	185, 405
HpyCH4III	ACNGT	3 cut(s)	229, 385, 497
HpyCH4IV	ACGT	1 cut(s)	261
HpyCH4V	TGCA	4 cut(s)	107, 313, 364, 511
HpyF10VI	GCNNNNNNNGC	1 cut(s)	370
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	111
Ksp22I	TGATCA	1 cut(s)	268
Kzo9I	GATC	1 cut(s)	268
Lsp1109I	GCAGC	1 cut(s)	297
LweI	GCATC	1 cut(s)	168
MaeI	CTAG	1 cut(s)	131
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	223, 431, 479
MalI	GATC	1 cut(s)	270
MboI	GATC	1 cut(s)	268
MboII	GAAGA	3 cut(s)	80, 161, 188
MluCI	AATT	4 cut(s)	62, 244, 454, 521
MlyI	GAGTC	1 cut(s)	195
MnlI	CCTC	3 cut(s)	153, 173, 510
MroXI	GAANNNNTTC	2 cut(s)	237, 248
MseI	TTAA	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	43, 191
Mva1269I	GAATGC	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	43, 191
MvnI	CGCG	1 cut(s)	478
MwoI	GCNNNNNNNGC	1 cut(s)	370
NdeII	GATC	1 cut(s)	268
NlaIII	CATG	1 cut(s)	111
NlaIV	GGNNCC	1 cut(s)	234
NmuCI	GTSAC	2 cut(s)	223, 479
NspI	RCATGY	1 cut(s)	111
PaeI	GCATGC	1 cut(s)	111
PaeR7I	CTCGAG	1 cut(s)	461
PctI	GAATGC	1 cut(s)	135
PdmI	GAANNNNTTC	2 cut(s)	237, 248
PfeI	GAWTC	1 cut(s)	345
PflFI	GACNNNGTC	1 cut(s)	185
PkrI	GCNGC	1 cut(s)	312
PleI	GAGTC	1 cut(s)	194
PpsI	GAGTC	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	261
Psp6I	CCWGG	2 cut(s)	41, 189
PspEI	GGTNACC	1 cut(s)	223
PspGI	CCWGG	2 cut(s)	41, 189
PspN4I	GGNNCC	1 cut(s)	234
PspPI	GGNCC	1 cut(s)	45
PsyI	GACNNNGTC	1 cut(s)	185
RsaI	GTAC	2 cut(s)	25, 52
RsaNI	GTAC	2 cut(s)	24, 51
SalI	GTCGAC	1 cut(s)	410
SaqAI	TTAA	1 cut(s)	125
SatI	GCNGC	1 cut(s)	311
Sau3AI	GATC	1 cut(s)	268
Sau96I	GGNCC	1 cut(s)	45
ScaI	AGTACT	1 cut(s)	52
SchI	GAGTC	1 cut(s)	195
ScrFI	CCNGG	2 cut(s)	43, 191
SetI	ASST	4 cut(s)	121, 145, 264, 403
SfaNI	GCATC	1 cut(s)	168
Sfr274I	CTCGAG	1 cut(s)	461
SgrDI	CGTCGACG	1 cut(s)	410
SinI	GGWCC	1 cut(s)	45
SlaI	CTCGAG	1 cut(s)	461
SmlI	CTYRAG	2 cut(s)	275, 461
SmoI	CTYRAG	2 cut(s)	275, 461
SphI	GCATGC	1 cut(s)	111
Sse9I	AATT	4 cut(s)	62, 244, 454, 521
SspMI	CTAG	1 cut(s)	131
StyD4I	CCNGG	2 cut(s)	41, 189
StyI	CCWWGG	2 cut(s)	130, 211
TaaI	ACNGT	3 cut(s)	229, 385, 497
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	5 cut(s)	343, 378, 411, 462, 515
TaqII	GACCGA	1 cut(s)	198
TasI	AATT	4 cut(s)	62, 244, 454, 521
TatI	WGTACW	1 cut(s)	50
TfiI	GAWTC	1 cut(s)	345
Tru1I	TTAA	1 cut(s)	125
Tru9I	TTAA	1 cut(s)	125
TseFI	GTSAC	2 cut(s)	223, 479
TseI	GCWGC	1 cut(s)	310
Tsp45I	GTSAC	2 cut(s)	223, 479
TspDTI	ATGAA	4 cut(s)	75, 237, 241, 348
Tth111I	GACNNNGTC	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	45
XapI	RAATTY	2 cut(s)	62, 244
XceI	RCATGY	1 cut(s)	111
XhoI	CTCGAG	1 cut(s)	461
XmaJI	CCTAGG	1 cut(s)	130
XmiI	GTMKAC	1 cut(s)	411
XmnI	GAANNNNTTC	2 cut(s)	237, 248
XspI	CTAG	1 cut(s)	131
ZrmI	AGTACT	1 cut(s)	52

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.