Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

14976512 .. 14979353

Gene Structure 2842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G095000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGGGTTCAATCCTTGAAAGCTCCACCATAGAAAATGAAGCAATAGAAACCCAATACCTTCAGAAAGGAGTGAGACACTTGTGTGAAAGAGGGTTGACCAGAGTTCCAAGCAAGTACATATTGCCCATCAACGAACGACCCAACTTGGGAGACACAAGGGTTAATGCTGGCAACCTTAACCTCAAGCTGCCAGTTATTGATTTCACTCAGTTTCAAGGCTCAGATAGATGCCAAGCAATACATTCCCTCGAAAAAGCTTGCCGAGAATTCGGATTTTTTCAGTTGGTAAACCATGGTATCAAAGATGACGTTATTCTTCGAATGGTGAATGTAAGTAGAAGATTTTTCGAGCTCCCTTTCGACGAGAGAGCAAAGTACATGTCAAAGGACATGGCTTCCCCGGCTAGGTATGGAACAAGCTATAACCAGAGCAATGACAAAGTGTTCTGCTGGAGAGACTTTCTGAAACTCAGCTGCCAACCTTTAGAAGACACTGTGCCTTGTTGGCCTTCCTCTCCTGAGGACTTAAGGGAGGCAGTCGTGAGCTACTCGAAGAGCACTAATTTTTTGTATCTAATGCTAATGGAGGCCATCTTGGAAAGCCTAGGATTGGAGGAAACAACAGAAAGTGCTGAAAGAAAAAGCAGAAGCATAGAGGAATTTGAAGATGGAAGCCAACTCATTGTGGCAAATTGCTACCCTGCATGCCCTGAGCCAGATTTAACACTAGGCATGCCACCCCATTCCGATTATGGCCTCCTCACTCTTCTCCTTCAAGATGAAGTCGAGGGCCTTCAAATACAACATGAGGGCAGATGGGTAACTGTGGAACCACTTCCAAATTCATTCGTTGTCAATGTTGGTGATCATCTTGAGATATTCAGCAATGGGAGATACAAGAGCGTGCTCCACAGGGTTCTTGTCAACTCCTGCAAGTCTCGCATCTCTGTGGCCTCATTGCACAGCCTGCCATTCAACAGCATGGTTCGACCATCGCCAAAACTCATTGACCAAGCTAACCCTCTACGTTACAAGGACACAGACTTTGCCACTTTCCTTCGCTTTGTTTCTTCTCATGACATGAACGCCAAGACATTCTTAGAATCCAGGAAATTGACTTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

375

Amino Acids

42.56

Weight (kDa)

5.68

Isoelectric Point (pI)

53.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	3 cut(s)	266, 659, 841
AcuI	CTGAAG	1 cut(s)	44
AfaI	GTAC	2 cut(s)	116, 377
AfiI	CCNNNNNNNGG	3 cut(s)	146, 405, 610
AflII	CTTAAG	1 cut(s)	526
AflIII	ACRYGT	1 cut(s)	378
AgsI	TTSAA	7 cut(s)	9, 17, 215, 665, 776, 797, 976
AjnI	CCWGG	1 cut(s)	1106
AleI	CACNNNNGTG	1 cut(s)	81
AluBI	AGCT	8 cut(s)	21, 187, 257, 352, 420, 474, 546, 1016
AluI	AGCT	8 cut(s)	21, 187, 257, 352, 420, 474, 546, 1016
Alw21I	GWGCWC	3 cut(s)	354, 560, 909
Alw26I	GTCTC	4 cut(s)	67, 144, 450, 942
AoxI	GGCC	5 cut(s)	506, 588, 754, 790, 951
ApeKI	GCWGC	2 cut(s)	187, 474
ApoI	RAATTY	3 cut(s)	266, 659, 841
ArsI	GACNNNNNNTTYG	4 cut(s)	365, 397, 1028, 1060
Asp700I	GAANNNNTTC	1 cut(s)	834
AspA2I	CCTAGG	1 cut(s)	604
AspS9I	GGNCC	1 cut(s)	790
AsuC2I	CCSGG	1 cut(s)	401
AsuHPI	GGTGA	2 cut(s)	337, 875
AsuII	TTCGAA	1 cut(s)	319
AvrII	CCTAGG	1 cut(s)	604
AxyI	CCTNAGG	1 cut(s)	519
BaeI	ACNNNNGTAYC	2 cut(s)	280, 313
BanII	GRGCYC	1 cut(s)	354
BbsI	GAAGAC	1 cut(s)	495
Bbv12I	GWGCWC	3 cut(s)	354, 560, 909
BbvI	GCAGC	2 cut(s)	174, 461
BccI	CCATC	5 cut(s)	134, 599, 662, 810, 1000
BciT130I	CCWGG	1 cut(s)	1108
BclI	TGATCA	1 cut(s)	865
BcnI	CCSGG	1 cut(s)	401
BcoDI	GTCTC	4 cut(s)	67, 144, 450, 942
BfaI	CTAG	3 cut(s)	405, 605, 728
BfrI	CTTAAG	1 cut(s)	526
BglI	GCCNNNNNGGC	1 cut(s)	505
BisI	GCNGC	2 cut(s)	188, 475
BlnI	CCTAGG	1 cut(s)	604
BlsI	GCNGC	2 cut(s)	189, 476
Bme1390I	CCNGG	2 cut(s)	401, 1108
BmgT120I	GGNCC	1 cut(s)	790
BmiI	GGNNCC	1 cut(s)	831
BmrFI	CCNGG	2 cut(s)	401, 1108
BmsI	GCATC	2 cut(s)	218, 951
BpiI	GAAGAC	1 cut(s)	495
BpmI	CTGGAG	1 cut(s)	472
Bpu10I	CCTNAGC	1 cut(s)	711
Bpu14I	TTCGAA	1 cut(s)	319
BpuEI	CTTGAG	2 cut(s)	167, 893
BpuMI	CCSGG	1 cut(s)	401
BsaJI	CCNNGG	3 cut(s)	292, 399, 604
Bsc4I	CCNNNNNNNGG	3 cut(s)	146, 405, 610
Bse1I	ACTGG	1 cut(s)	191
Bse21I	CCTNAGG	1 cut(s)	519
Bse3DI	GCAATG	3 cut(s)	439, 892, 956
BseBI	CCWGG	1 cut(s)	1108
BseDI	CCNNGG	3 cut(s)	292, 399, 604
BseLI	CCNNNNNNNGG	3 cut(s)	146, 405, 610
BseMI	GCAATG	3 cut(s)	439, 892, 956
BseMII	CTCAG	5 cut(s)	221, 234, 484, 510, 702
BseNI	ACTGG	1 cut(s)	191
BseRI	GAGGAG	1 cut(s)	749
BseXI	GCAGC	2 cut(s)	174, 461
BshFI	GGCC	5 cut(s)	508, 590, 756, 792, 953
BsiHKAI	GWGCWC	3 cut(s)	354, 560, 909
BsiSI	CCGG	1 cut(s)	401
BslI	CCNNNNNNNGG	3 cut(s)	146, 405, 610
BsmAI	GTCTC	4 cut(s)	67, 144, 450, 942
BsnI	GGCC	5 cut(s)	508, 590, 756, 792, 953
Bsp119I	TTCGAA	1 cut(s)	319
Bsp1286I	GDGCHC	3 cut(s)	354, 560, 909
Bsp143I	GATC	1 cut(s)	865
Bsp19I	CCATGG	1 cut(s)	292
BspANI	GGCC	5 cut(s)	508, 590, 756, 792, 953
BspCNI	CTCAG	5 cut(s)	220, 233, 483, 511, 703
BspHI	TCATGA	2 cut(s)	1075, 1121
BspLI	GGNNCC	1 cut(s)	831
BspQI	GCTCTTC	1 cut(s)	548
BspT104I	TTCGAA	1 cut(s)	319
BspTI	CTTAAG	1 cut(s)	526
BsrDI	GCAATG	3 cut(s)	439, 892, 956
BsrI	ACTGG	1 cut(s)	191
BssECI	CCNNGG	3 cut(s)	292, 399, 604
BssMI	GATC	1 cut(s)	865
BssT1I	CCWWGG	2 cut(s)	292, 604
Bst2UI	CCWGG	1 cut(s)	1108
Bst4CI	ACNGT	2 cut(s)	496, 826
Bst6I	CTCTTC	2 cut(s)	548, 771
BstAFI	CTTAAG	1 cut(s)	526
BstAPI	GCANNNNNTGC	1 cut(s)	967
BstBI	TTCGAA	1 cut(s)	319
BstC8I	GCNNGC	6 cut(s)	169, 259, 706, 734, 905, 968
BstDEI	CTNAG	6 cut(s)	207, 220, 470, 519, 711, 1099
BstDSI	CCRYGG	1 cut(s)	292
BstKTI	GATC	1 cut(s)	868
BstMAI	GTCTC	4 cut(s)	67, 144, 450, 942
BstMBI	GATC	1 cut(s)	865
BstMWI	GCNNNNNNNGC	4 cut(s)	401, 505, 939, 967
BstNI	CCWGG	1 cut(s)	1108
BstNSI	RCATGY	3 cut(s)	382, 708, 736
BstSCI	CCNGG	2 cut(s)	399, 1106
BstV1I	GCAGC	2 cut(s)	174, 461
BstV2I	GAAGAC	1 cut(s)	495
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	5 cut(s)	508, 590, 756, 792, 953
BtgI	CCRYGG	1 cut(s)	292
BtgZI	GCGATG	1 cut(s)	978
BtsIMutI	CAGTG	1 cut(s)	492
Cac8I	GCNNGC	6 cut(s)	169, 259, 706, 734, 905, 968
CciI	TCATGA	2 cut(s)	1075, 1121
Cfr13I	GGNCC	1 cut(s)	790
Csp6I	GTAC	2 cut(s)	115, 376
CviQI	GTAC	2 cut(s)	115, 376
DdeI	CTNAG	6 cut(s)	207, 220, 470, 519, 711, 1099
DpnI	GATC	1 cut(s)	867
DpnII	GATC	1 cut(s)	865
Eam1104I	CTCTTC	2 cut(s)	548, 771
EarI	CTCTTC	2 cut(s)	548, 771
Ecl136II	GAGCTC	1 cut(s)	352
Eco130I	CCWWGG	2 cut(s)	292, 604
Eco24I	GRGCYC	1 cut(s)	354
Eco53kI	GAGCTC	1 cut(s)	352
Eco57I	CTGAAG	1 cut(s)	44
Eco81I	CCTNAGG	1 cut(s)	519
EcoICRI	GAGCTC	1 cut(s)	352
EcoO109I	RGGNCCY	1 cut(s)	790
EcoRI	GAATTC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	1106
EcoT14I	CCWWGG	2 cut(s)	292, 604
EcoT38I	GRGCYC	1 cut(s)	354
ErhI	CCWWGG	2 cut(s)	292, 604
FalI	AAGNNNNNCTT	2 cut(s)	1082, 1114
FbaI	TGATCA	1 cut(s)	865
Fnu4HI	GCNGC	2 cut(s)	188, 475
FriOI	GRGCYC	1 cut(s)	354
Fsp4HI	GCNGC	2 cut(s)	188, 475
FspBI	CTAG	3 cut(s)	405, 605, 728
GluI	GCNGC	2 cut(s)	188, 475
GsuI	CTGGAG	1 cut(s)	472
HaeIII	GGCC	5 cut(s)	508, 590, 756, 792, 953
HapII	CCGG	1 cut(s)	401
HincII	GTYRAC	2 cut(s)	96, 925
HindII	GTYRAC	2 cut(s)	96, 925
HindIII	AAGCTT	1 cut(s)	255
HinfI	GANTC	1 cut(s)	1103
HpaII	CCGG	1 cut(s)	401
HphI	GGTGA	2 cut(s)	337, 875
Hpy166II	GTNNAC	3 cut(s)	96, 289, 925
Hpy188I	TCNGA	5 cut(s)	63, 223, 272, 465, 748
Hpy188III	TCNNGA	6 cut(s)	518, 541, 776, 872, 1076, 1122
Hpy8I	GTNNAC	3 cut(s)	96, 289, 925
Hpy99I	CGWCG	1 cut(s)	365
HpyAV	CCTTC	5 cut(s)	68, 519, 782, 803, 1067
HpyCH4III	ACNGT	2 cut(s)	496, 826
HpyCH4IV	ACGT	2 cut(s)	309, 1027
HpyCH4V	TGCA	3 cut(s)	704, 933, 961
HpyF10VI	GCNNNNNNNGC	4 cut(s)	401, 505, 939, 967
HpyF3I	CTNAG	6 cut(s)	207, 220, 470, 519, 711, 1099
HpySE526I	ACGT	2 cut(s)	309, 1027
Ksp22I	TGATCA	1 cut(s)	865
Kzo9I	GATC	1 cut(s)	865
LguI	GCTCTTC	1 cut(s)	548
LmnI	GCTCC	3 cut(s)	26, 357, 912
Lsp1109I	GCAGC	2 cut(s)	174, 461
LweI	GCATC	2 cut(s)	218, 951
MaeI	CTAG	3 cut(s)	405, 605, 728
MaeII	ACGT	2 cut(s)	309, 1027
MaeIII	GTNAC	2 cut(s)	820, 1028
MalI	GATC	1 cut(s)	867
MboI	GATC	1 cut(s)	865
MboII	GAAGA	7 cut(s)	308, 351, 500, 565, 677, 758, 1062
MhlI	GDGCHC	3 cut(s)	354, 560, 909
MluCI	AATT	6 cut(s)	266, 562, 659, 691, 841, 1112
MroXI	GAANNNNTTC	1 cut(s)	834
MseI	TTAA	4 cut(s)	162, 177, 527, 722
MslI	CAYNNNNRTG	2 cut(s)	81, 947
MspA1I	CMGCKG	1 cut(s)	474
MspCI	CTTAAG	1 cut(s)	526
MspI	CCGG	1 cut(s)	401
MspR9I	CCNGG	2 cut(s)	401, 1108
MvaI	CCWGG	1 cut(s)	1108
MwoI	GCNNNNNNNGC	4 cut(s)	401, 505, 939, 967
NciI	CCSGG	1 cut(s)	401
NcoI	CCATGG	1 cut(s)	292
NdeII	GATC	1 cut(s)	865
NlaIV	GGNNCC	1 cut(s)	831
NmeAIII	GCCGAG	1 cut(s)	287
NspI	RCATGY	3 cut(s)	382, 708, 736
NspV	TTCGAA	1 cut(s)	319
OliI	CACNNNNGTG	1 cut(s)	81
PaeI	GCATGC	2 cut(s)	708, 736
PagI	TCATGA	2 cut(s)	1075, 1121
PciI	ACATGT	1 cut(s)	378
PciSI	GCTCTTC	1 cut(s)	548
PdmI	GAANNNNTTC	1 cut(s)	834
PfeI	GAWTC	1 cut(s)	1103
PfoI	TCCNGGA	1 cut(s)	1106
PkrI	GCNGC	2 cut(s)	189, 476
PscI	ACATGT	1 cut(s)	378
Psp124BI	GAGCTC	1 cut(s)	354
Psp6I	CCWGG	1 cut(s)	1106
PspGI	CCWGG	1 cut(s)	1106
PspN4I	GGNNCC	1 cut(s)	831
PspPI	GGNCC	1 cut(s)	790
PvuII	CAGCTG	1 cut(s)	474
RsaI	GTAC	2 cut(s)	116, 377
RsaNI	GTAC	2 cut(s)	115, 376
RseI	CAYNNNNRTG	2 cut(s)	81, 947
SacI	GAGCTC	1 cut(s)	354
SapI	GCTCTTC	1 cut(s)	548
SaqAI	TTAA	4 cut(s)	162, 177, 527, 722
SatI	GCNGC	2 cut(s)	188, 475
Sau3AI	GATC	1 cut(s)	865
Sau96I	GGNCC	1 cut(s)	790
ScrFI	CCNGG	2 cut(s)	401, 1108
SduI	GDGCHC	3 cut(s)	354, 560, 909
SfaNI	GCATC	2 cut(s)	218, 951
SfuI	TTCGAA	1 cut(s)	319
SmiMI	CAYNNNNRTG	2 cut(s)	81, 947
SmlI	CTYRAG	3 cut(s)	182, 526, 872
SmoI	CTYRAG	3 cut(s)	182, 526, 872
SphI	GCATGC	2 cut(s)	708, 736
Sse9I	AATT	6 cut(s)	266, 562, 659, 691, 841, 1112
SspMI	CTAG	3 cut(s)	405, 605, 728
SstI	GAGCTC	1 cut(s)	354
StyD4I	CCNGG	2 cut(s)	399, 1106
StyI	CCWWGG	2 cut(s)	292, 604
TaaI	ACNGT	2 cut(s)	496, 826
TaiI	ACGT	2 cut(s)	312, 1030
TaqI	TCGA	7 cut(s)	249, 319, 348, 360, 551, 786, 988
TasI	AATT	6 cut(s)	266, 562, 659, 691, 841, 1112
TatI	WGTACW	2 cut(s)	114, 375
TfiI	GAWTC	1 cut(s)	1103
Tru1I	TTAA	4 cut(s)	162, 177, 527, 722
Tru9I	TTAA	4 cut(s)	162, 177, 527, 722
TscAI	CASTG	1 cut(s)	499
TseI	GCWGC	2 cut(s)	187, 474
TspDTI	ATGAA	5 cut(s)	51, 795, 834, 1097, 1110
TspRI	CASTG	1 cut(s)	499
Vha464I	CTTAAG	1 cut(s)	526
XapI	RAATTY	3 cut(s)	266, 659, 841
XceI	RCATGY	3 cut(s)	382, 708, 736
XcmI	CCANNNNNNNNNTGG	1 cut(s)	749
XmaJI	CCTAGG	1 cut(s)	604
XmnI	GAANNNNTTC	1 cut(s)	834
XspI	CTAG	3 cut(s)	405, 605, 728

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.