Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

5153903 .. 5156404

Gene Structure 2502 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g05870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGTTACCTGACATGGGTACAAATAGTACTGCTGATGGTACAAACCATATCGAAAATGAAGAAACAGAAATACAATACCTTCAGAAGGGAGTGAGACATTTATGTGAAAGAGGGCTGACGAGGGTTCCAAGCAAGTACATATTGCCCATCCAAGGACGACCCAACTTGGGAGACACTGGGAATGCTAGCAAGCATAACCTCAAGTTGCCAGTTATTGATTTTACTCAGTTGCAAGGGTCCAACAGATCCCTAGTAATACAGTCCCTTGCAAACGCTTGCGAAGAATTCGGGTTTTTTCAGTTGATAAACCATGGTATCAAAGACGATGTTATTCTTGAAATGATTGATGTAAGCAGAAGATTTTTCGAGCTCCCTTTCAATGAGAGATCAAAGTACATGTCAAAGGATATGTCTTCCCCAGCTAGGTATGGAACAAGCTTTAACCAGAACAATGATAAAGTATTTTGCTGGAGAGACTTTCTGAAACTTAGCTGCCATCCTTTACAAGACACTGTGTCCTGTTGGCCTTCTTCTCCAGCGGACTTAAGGGAGGCAGTGGTGAACTACTCGAAGAGCACAAAGTTTTTGTATCTAATGCTAATGGAGGCAATCATGGAGAGCCTAGGATTGGTGGAAACTACAAAAGGTGGTGAGGCTAAAGGCAGTTTGGAGGAATTTGAAGATGGAAGCCAACTCATTGTGGCGAATTGCTACCCTGCGTGCCCTGAACCTGATTTAACACTAGGCATGCCACCCCATTCGGACTATGGCCTCCTCACTCTTCTCCTTCAAGATGAAGTTGAGGGTCTTCAAATACAGAATCAAGGAAGTTGGGTAACCGTGGAACCACTTCCAAATTCTTTTGTTGTCAATGTTGGTGATCATCTTGAGATATTTAGCAATGGGAGATACAAGAGCGTGGTCCATAGGGTTCTGGTCAACTCTCGCAAGTCTCGAATATCCGTAGCTTCATTGCACAGCCTGCCATTCAAGAGCACAGTTCGGCCATCACCTAAACTCATTGACGAAGTAAACCCTACACGTTACAAGGATACAGACTTCGCCAGTTTCCTCCAATACATTTCTAATTCTTCCCACGACGAAATGGACGCCAAGACTTTCCTACAGTCCAGGAAATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

382

Amino Acids

42.9

Weight (kDa)

5.63

Isoelectric Point (pI)

51.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	69 - 170	2.5e-28	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	231 - 325	5e-35	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	539
AclWI	GGATC	1 cut(s)	240
AcoI	YGGCCR	1 cut(s)	1004
AcsI	RAATTY	3 cut(s)	284, 674, 856
AcuI	CTGAAG	1 cut(s)	65
AcyI	GRCGYC	1 cut(s)	1110
AfaI	GTAC	5 cut(s)	19, 28, 40, 137, 395
AfiI	CCNNNNNNNGG	6 cut(s)	14, 85, 152, 167, 423, 628
AflII	CTTAAG	1 cut(s)	544
AflIII	ACRYGT	2 cut(s)	396, 1040
AgsI	TTSAA	6 cut(s)	338, 379, 680, 791, 812, 991
AhdI	GACNNNNNGTC	1 cut(s)	514
AjnI	CCWGG	1 cut(s)	1130
AluBI	AGCT	5 cut(s)	370, 422, 438, 492, 968
AluI	AGCT	5 cut(s)	370, 422, 438, 492, 968
Alw21I	GWGCWC	3 cut(s)	372, 578, 998
Alw26I	GTCTC	4 cut(s)	88, 165, 468, 957
AlwI	GGATC	1 cut(s)	240
AoxI	GGCC	3 cut(s)	524, 769, 1004
ApeKI	GCWGC	1 cut(s)	492
ApoI	RAATTY	3 cut(s)	284, 674, 856
ArsI	GACNNNNNNTTYG	4 cut(s)	383, 395, 415, 427
Asp700I	GAANNNNTTC	1 cut(s)	849
AspA2I	CCTAGG	1 cut(s)	622
AspS9I	GGNCC	2 cut(s)	237, 922
AsuHPI	GGTGA	4 cut(s)	571, 662, 890, 1002
AsuNHI	GCTAGC	1 cut(s)	185
AvaII	GGWCC	2 cut(s)	237, 922
AvrII	CCTAGG	1 cut(s)	622
BaeGI	GKGCMC	1 cut(s)	725
BaeI	ACNNNNGTAYC	2 cut(s)	298, 331
BanII	GRGCYC	1 cut(s)	372
BbsI	GAAGAC	2 cut(s)	405, 800
Bbv12I	GWGCWC	3 cut(s)	372, 578, 998
BbvI	GCAGC	1 cut(s)	479
BccI	CCATC	5 cut(s)	29, 155, 504, 677, 1015
BciT130I	CCWGG	1 cut(s)	1132
BciVI	GTATCC	1 cut(s)	1045
BclI	TGATCA	1 cut(s)	880
BcoDI	GTCTC	4 cut(s)	88, 165, 468, 957
BfaI	CTAG	5 cut(s)	186, 251, 423, 623, 743
BfmI	CTRYAG	1 cut(s)	1124
BfrI	CTTAAG	1 cut(s)	544
BfuI	GTATCC	1 cut(s)	1045
BisI	GCNGC	1 cut(s)	493
BlnI	CCTAGG	1 cut(s)	622
BlsI	GCNGC	1 cut(s)	494
BmcAI	AGTACT	1 cut(s)	28
Bme1390I	CCNGG	1 cut(s)	1132
Bme18I	GGWCC	2 cut(s)	237, 922
BmeRI	GACNNNNNGTC	1 cut(s)	514
BmgT120I	GGNCC	2 cut(s)	237, 922
BmiI	GGNNCC	3 cut(s)	126, 238, 846
BmrFI	CCNGG	1 cut(s)	1132
BmrI	ACTGGG	1 cut(s)	186
BmtI	GCTAGC	1 cut(s)	189
BmuI	ACTGGG	1 cut(s)	186
BpiI	GAAGAC	2 cut(s)	405, 800
BpmI	CTGGAG	2 cut(s)	490, 519
BpuEI	CTTGAG	2 cut(s)	185, 908
BsaHI	GRCGYC	1 cut(s)	1110
BsaJI	CCNNGG	4 cut(s)	151, 310, 622, 840
Bsc4I	CCNNNNNNNGG	6 cut(s)	14, 85, 152, 167, 423, 628
Bse1I	ACTGG	3 cut(s)	181, 209, 1065
Bse3DI	GCAATG	2 cut(s)	907, 971
BseBI	CCWGG	1 cut(s)	1132
BseDI	CCNNGG	4 cut(s)	151, 310, 622, 840
BseGI	GGATG	2 cut(s)	147, 496
BseLI	CCNNNNNNNGG	6 cut(s)	14, 85, 152, 167, 423, 628
BseMI	GCAATG	2 cut(s)	907, 971
BseMII	CTCAG	1 cut(s)	239
BseNI	ACTGG	3 cut(s)	181, 209, 1065
BseRI	GAGGAG	1 cut(s)	764
BseSI	GKGCMC	1 cut(s)	725
BseXI	GCAGC	1 cut(s)	479
BseYI	CCCAGC	1 cut(s)	418
BshFI	GGCC	3 cut(s)	526, 771, 1006
BsiHKAI	GWGCWC	3 cut(s)	372, 578, 998
BslFI	GGGAC	1 cut(s)	247
BslI	CCNNNNNNNGG	6 cut(s)	14, 85, 152, 167, 423, 628
BsmAI	GTCTC	4 cut(s)	88, 165, 468, 957
BsmFI	GGGAC	1 cut(s)	247
BsmI	GAATGC	1 cut(s)	187
BsnI	GGCC	3 cut(s)	526, 771, 1006
Bsp1286I	GDGCHC	4 cut(s)	372, 578, 725, 998
Bsp143I	GATC	3 cut(s)	245, 386, 880
Bsp19I	CCATGG	1 cut(s)	310
BspACI	CCGC	1 cut(s)	539
BspANI	GGCC	3 cut(s)	526, 771, 1006
BspCNI	CTCAG	1 cut(s)	238
BspLI	GGNNCC	3 cut(s)	126, 238, 846
BspOI	GCTAGC	1 cut(s)	189
BspPI	GGATC	1 cut(s)	240
BspQI	GCTCTTC	1 cut(s)	566
BspTI	CTTAAG	1 cut(s)	544
BsrDI	GCAATG	2 cut(s)	907, 971
BsrI	ACTGG	3 cut(s)	181, 209, 1065
BssECI	CCNNGG	4 cut(s)	151, 310, 622, 840
BssMI	GATC	3 cut(s)	245, 386, 880
BssNI	GRCGYC	1 cut(s)	1110
BssT1I	CCWWGG	3 cut(s)	151, 310, 622
Bst2UI	CCWGG	1 cut(s)	1132
Bst4CI	ACNGT	5 cut(s)	261, 514, 841, 1000, 1128
Bst6I	CTCTTC	2 cut(s)	566, 786
BstACI	GRCGYC	1 cut(s)	1110
BstAFI	CTTAAG	1 cut(s)	544
BstAPI	GCANNNNNTGC	1 cut(s)	982
BstC8I	GCNNGC	6 cut(s)	187, 191, 277, 721, 749, 983
BstDEI	CTNAG	2 cut(s)	225, 488
BstDSI	CCRYGG	2 cut(s)	310, 840
BstEII	GGTNACC	1 cut(s)	835
BstENI	CCTNNNNNAGG	1 cut(s)	83
BstF5I	GGATG	2 cut(s)	147, 496
BstKTI	GATC	3 cut(s)	248, 389, 883
BstMAI	GTCTC	4 cut(s)	88, 165, 468, 957
BstMBI	GATC	3 cut(s)	245, 386, 880
BstMWI	GCNNNNNNNGC	1 cut(s)	982
BstNI	CCWGG	1 cut(s)	1132
BstNSI	RCATGY	2 cut(s)	400, 751
BstPI	GGTNACC	1 cut(s)	835
BstSCI	CCNGG	1 cut(s)	1130
BstSFI	CTRYAG	1 cut(s)	1124
BstSLI	GKGCMC	1 cut(s)	725
BstV1I	GCAGC	1 cut(s)	479
BstV2I	GAAGAC	2 cut(s)	405, 800
BstX2I	RGATCY	1 cut(s)	245
BstYI	RGATCY	1 cut(s)	245
BsuI	GTATCC	1 cut(s)	1045
BsuRI	GGCC	3 cut(s)	526, 771, 1006
BtgI	CCRYGG	2 cut(s)	310, 840
BtsCI	GGATG	2 cut(s)	147, 496
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	3 cut(s)	174, 510, 561
Cac8I	GCNNGC	6 cut(s)	187, 191, 277, 721, 749, 983
Cfr13I	GGNCC	2 cut(s)	237, 922
CseI	GACGC	1 cut(s)	1118
Csp6I	GTAC	5 cut(s)	18, 27, 39, 136, 394
CviAII	CATG	5 cut(s)	13, 311, 397, 613, 748
CviQI	GTAC	5 cut(s)	18, 27, 39, 136, 394
DdeI	CTNAG	2 cut(s)	225, 488
DpnI	GATC	3 cut(s)	247, 388, 882
DpnII	GATC	3 cut(s)	245, 386, 880
DriI	GACNNNNNGTC	1 cut(s)	514
EaeI	YGGCCR	1 cut(s)	1004
Eam1104I	CTCTTC	2 cut(s)	566, 786
Eam1105I	GACNNNNNGTC	1 cut(s)	514
EarI	CTCTTC	2 cut(s)	566, 786
Ecl136II	GAGCTC	1 cut(s)	370
Eco130I	CCWWGG	3 cut(s)	151, 310, 622
Eco24I	GRGCYC	1 cut(s)	372
Eco47I	GGWCC	2 cut(s)	237, 922
Eco53kI	GAGCTC	1 cut(s)	370
Eco57I	CTGAAG	1 cut(s)	65
Eco91I	GGTNACC	1 cut(s)	835
EcoICRI	GAGCTC	1 cut(s)	370
EcoNI	CCTNNNNNAGG	1 cut(s)	83
EcoO65I	GGTNACC	1 cut(s)	835
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	1 cut(s)	1130
EcoT14I	CCWWGG	3 cut(s)	151, 310, 622
EcoT38I	GRGCYC	1 cut(s)	372
ErhI	CCWWGG	3 cut(s)	151, 310, 622
FaeI	CATG	5 cut(s)	16, 314, 400, 616, 751
FaqI	GGGAC	1 cut(s)	247
FatI	CATG	5 cut(s)	12, 310, 396, 612, 747
FbaI	TGATCA	1 cut(s)	880
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	2 cut(s)	134, 483
FriOI	GRGCYC	1 cut(s)	372
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	5 cut(s)	186, 251, 423, 623, 743
GluI	GCNGC	1 cut(s)	493
GsaI	CCCAGC	1 cut(s)	422
GsuI	CTGGAG	2 cut(s)	490, 519
HaeIII	GGCC	3 cut(s)	526, 771, 1006
HgaI	GACGC	1 cut(s)	1118
Hin1I	GRCGYC	1 cut(s)	1110
Hin1II	CATG	5 cut(s)	16, 314, 400, 616, 751
HincII	GTYRAC	1 cut(s)	940
HindII	GTYRAC	1 cut(s)	940
HindIII	AAGCTT	1 cut(s)	436
HinfI	GANTC	1 cut(s)	820
HphI	GGTGA	4 cut(s)	571, 662, 890, 1002
Hpy166II	GTNNAC	3 cut(s)	562, 940, 1033
Hpy188I	TCNGA	3 cut(s)	84, 483, 763
Hpy188III	TCNNGA	5 cut(s)	335, 791, 887, 954, 991
Hpy8I	GTNNAC	3 cut(s)	562, 940, 1033
Hpy99I	CGWCG	1 cut(s)	1103
HpyAV	CCTTC	4 cut(s)	79, 89, 537, 797
HpyCH4III	ACNGT	5 cut(s)	261, 514, 841, 1000, 1128
HpyCH4IV	ACGT	1 cut(s)	1042
HpyCH4V	TGCA	3 cut(s)	232, 269, 976
HpyF10VI	GCNNNNNNNGC	1 cut(s)	982
HpyF3I	CTNAG	2 cut(s)	225, 488
HpySE526I	ACGT	1 cut(s)	1042
Hsp92I	GRCGYC	1 cut(s)	1110
Hsp92II	CATG	5 cut(s)	16, 314, 400, 616, 751
Ksp22I	TGATCA	1 cut(s)	880
Kzo9I	GATC	3 cut(s)	245, 386, 880
LguI	GCTCTTC	1 cut(s)	566
LmnI	GCTCC	1 cut(s)	375
Lsp1109I	GCAGC	1 cut(s)	479
MaeI	CTAG	5 cut(s)	186, 251, 423, 623, 743
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	3 cut(s)	3, 835, 1043
MalI	GATC	3 cut(s)	247, 388, 882
MboI	GATC	3 cut(s)	245, 386, 880
MflI	RGATCY	1 cut(s)	245
MhlI	GDGCHC	4 cut(s)	372, 578, 725, 998
MluCI	AATT	6 cut(s)	284, 674, 706, 856, 1087, 1136
MmeI	TCCRAC	1 cut(s)	264
MroXI	GAANNNNTTC	1 cut(s)	849
MseI	TTAA	3 cut(s)	441, 545, 737
MslI	CAYNNNNRTG	1 cut(s)	102
MspA1I	CMGCKG	1 cut(s)	539
MspCI	CTTAAG	1 cut(s)	544
MspR9I	CCNGG	1 cut(s)	1132
Mva1269I	GAATGC	1 cut(s)	187
MvaI	CCWGG	1 cut(s)	1132
MwoI	GCNNNNNNNGC	1 cut(s)	982
NcoI	CCATGG	1 cut(s)	310
NdeII	GATC	3 cut(s)	245, 386, 880
NheI	GCTAGC	1 cut(s)	185
NlaIII	CATG	5 cut(s)	16, 314, 400, 616, 751
NlaIV	GGNNCC	3 cut(s)	126, 238, 846
NspI	RCATGY	2 cut(s)	400, 751
PaeI	GCATGC	1 cut(s)	751
PciI	ACATGT	1 cut(s)	396
PciSI	GCTCTTC	1 cut(s)	566
PcsI	WCGNNNNNNNCGW	1 cut(s)	952
PctI	GAATGC	1 cut(s)	187
PdmI	GAANNNNTTC	1 cut(s)	849
PfeI	GAWTC	1 cut(s)	820
PfoI	TCCNGGA	1 cut(s)	1130
PkrI	GCNGC	1 cut(s)	494
PscI	ACATGT	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	372
Psp6I	CCWGG	1 cut(s)	1130
PspEI	GGTNACC	1 cut(s)	835
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	1130
PspN4I	GGNNCC	3 cut(s)	126, 238, 846
PspPI	GGNCC	2 cut(s)	237, 922
PsuI	RGATCY	1 cut(s)	245
RsaI	GTAC	5 cut(s)	19, 28, 40, 137, 395
RsaNI	GTAC	5 cut(s)	18, 27, 39, 136, 394
RseI	CAYNNNNRTG	1 cut(s)	102
SacI	GAGCTC	1 cut(s)	372
SapI	GCTCTTC	1 cut(s)	566
SaqAI	TTAA	3 cut(s)	441, 545, 737
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	3 cut(s)	245, 386, 880
Sau96I	GGNCC	2 cut(s)	237, 922
ScaI	AGTACT	1 cut(s)	28
ScrFI	CCNGG	1 cut(s)	1132
SduI	GDGCHC	4 cut(s)	372, 578, 725, 998
SfcI	CTRYAG	1 cut(s)	1124
SinI	GGWCC	2 cut(s)	237, 922
SmiMI	CAYNNNNRTG	1 cut(s)	102
SmlI	CTYRAG	3 cut(s)	200, 544, 887
SmoI	CTYRAG	3 cut(s)	200, 544, 887
SphI	GCATGC	1 cut(s)	751
Sse9I	AATT	6 cut(s)	284, 674, 706, 856, 1087, 1136
SsiI	CCGC	1 cut(s)	539
SspMI	CTAG	5 cut(s)	186, 251, 423, 623, 743
SstI	GAGCTC	1 cut(s)	372
StyD4I	CCNGG	1 cut(s)	1130
StyI	CCWWGG	3 cut(s)	151, 310, 622
TaaI	ACNGT	5 cut(s)	261, 514, 841, 1000, 1128
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	4 cut(s)	51, 366, 569, 955
TasI	AATT	6 cut(s)	284, 674, 706, 856, 1087, 1136
TatI	WGTACW	3 cut(s)	26, 135, 393
TfiI	GAWTC	1 cut(s)	820
Tru1I	TTAA	3 cut(s)	441, 545, 737
Tru9I	TTAA	3 cut(s)	441, 545, 737
TscAI	CASTG	3 cut(s)	181, 517, 561
TseI	GCWGC	1 cut(s)	492
TspDTI	ATGAA	3 cut(s)	72, 810, 960
TspGWI	ACGGA	1 cut(s)	952
TspRI	CASTG	3 cut(s)	181, 517, 561
Vha464I	CTTAAG	1 cut(s)	544
VpaK11BI	GGWCC	2 cut(s)	237, 922
XagI	CCTNNNNNAGG	1 cut(s)	83
XapI	RAATTY	3 cut(s)	284, 674, 856
XceI	RCATGY	2 cut(s)	400, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	764
XmaJI	CCTAGG	1 cut(s)	622
XmnI	GAANNNNTTC	1 cut(s)	849
XspI	CTAG	5 cut(s)	186, 251, 423, 623, 743
ZrmI	AGTACT	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.