Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

26570460 .. 26574542

Gene Structure 4083 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G011860.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGGTTCAAGTGGTGCTGTTGCTGACACCAATTACAGAGAAAATAAAGCAACAGAAGCCCATGATCAATACCTGCAGAAAGGAGTGAGACACTTGTGTGAAGGAGGGCTGACTAGAGTTCCAACCAAGTACATACTGCCCAAGGAGGAACGACCCAATTCAGCAACAAGAGAGACTATTCTCAAGTTACCAGTTATTGATTTCGCTCAGTTGCAAGGCTCCAGCAGCAGATCCCAGGCATTGAACTCCCTCGCAAAATCTTGCGAAGAATTTGGAATTTTTCAGTTGATAAACCATGGTATCACAGATGAAGTTATATCCAGAATGGCTGATGTAAGTAAAAGGTTTTTTGAGCTTCCTTTCGATGAGAGATCAAAGTACATGTCAAAGGATATGGCTTCCCCAGCTAGGTATGGAACAAGCTTTAACCAAAACAATGATGAAGTGTTCTGCTGGAGAGACTTTCTCAAGCTTAGTTGCCATCCTTTATCAGACAGTGTTCCTTCTTGGCCATCATCTCCTGTGAACCTAAGGGAAACAGTAGTGAACTATTCAAAGAACACGAAATTTTTGTATCTAGAGCTGTTGGAGGCTGTCATGGAGAGCCTTGGATTGATGGAAACTACAAAGAGTTCTGGTACAGAGAAAATAGACACCAGGACCAGTACTTTAGATGAATTTGAAGATGGAAGCCAACTGATTGTGGTGAACTGCTACCCTGCATGCCCTGAACCTGATTTAACCCTAGGCATTCCACCTCATTCTGATTATGGCATCCTCACTCTTCTCCTTCAAGACCGAGTCCAGGGTCTTCAAATACAGCACCAAGGAAAATGGGTGACCGTGGAACCACTTCCGAATTCATTCATCGTCAACGTTGGTGATCATCTTGAGATATTTAGCAATGGGAGATACAAAAGCGTGCTGCATAGGGTTGTTGTCAACTCATCCAAGTCTCGAATCTCTGTTGCTTCATTGCACAGCCTGCCATTCGACACCGTTGTTCGGCCTTCACCTAAACTCGTCGACGAAGCCAATCCTGTTCGTTACAGGGACACAGACTTTGCCAATTTTCTCGAGTATATTGCTTCGCGTGACCACCAGACGAACGGTAAGAGTTTCTTGCAATCGAGGAAATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

381

Amino Acids

42.89

Weight (kDa)

6.09

Isoelectric Point (pI)

44.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	63 - 169	2.3e-27	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	232 - 326	1.8e-35	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	81
AccI	GTMKAC	1 cut(s)	1026
AccII	CGCG	1 cut(s)	1093
AclI	AACGTT	1 cut(s)	876
AclWI	GGATC	1 cut(s)	225
AcoI	YGGCCR	1 cut(s)	509
AcsI	RAATTY	5 cut(s)	269, 276, 566, 677, 859
AfaI	GTAC	4 cut(s)	131, 380, 640, 667
AfiI	CCNNNNNNNGG	3 cut(s)	408, 805, 1005
AflIII	ACRYGT	1 cut(s)	381
AgsI	TTSAA	6 cut(s)	9, 244, 555, 683, 794, 815
AjnI	CCWGG	3 cut(s)	234, 656, 804
AleI	CACNNNNGTG	1 cut(s)	96
AluBI	AGCT	5 cut(s)	355, 407, 423, 472, 583
AluI	AGCT	5 cut(s)	355, 407, 423, 472, 583
Alw26I	GTCTC	4 cut(s)	82, 167, 453, 960
AlwI	GGATC	1 cut(s)	225
Ama87I	CYCGRG	1 cut(s)	1076
AoxI	GGCC	2 cut(s)	509, 1007
ApeKI	GCWGC	2 cut(s)	225, 925
ApoI	RAATTY	5 cut(s)	269, 276, 566, 677, 859
ArsI	GACNNNNNNTTYG	4 cut(s)	368, 400, 1046, 1078
Asp700I	GAANNNNTTC	2 cut(s)	852, 863
AspA2I	CCTAGG	1 cut(s)	745
AspS9I	GGNCC	1 cut(s)	660
AsuHPI	GGTGA	4 cut(s)	718, 850, 893, 1005
AvaI	CYCGRG	1 cut(s)	1076
AvaII	GGWCC	1 cut(s)	660
AvrII	CCTAGG	1 cut(s)	745
AxyI	CCTNAGG	1 cut(s)	530
BaeI	ACNNNNGTAYC	2 cut(s)	283, 316
BalI	TGGCCA	1 cut(s)	511
BbsI	GAAGAC	1 cut(s)	803
BbvI	GCAGC	2 cut(s)	237, 912
BccI	CCATC	4 cut(s)	489, 520, 610, 680
BcgI	CGANNNNNNTGC	2 cut(s)	1067, 1101
BciT130I	CCWGG	3 cut(s)	236, 658, 806
BclI	TGATCA	2 cut(s)	64, 883
BcoDI	GTCTC	4 cut(s)	82, 167, 453, 960
BfaI	CTAG	4 cut(s)	114, 408, 578, 746
BfmI	CTRYAG	1 cut(s)	74
BfuAI	ACCTGC	1 cut(s)	81
BisI	GCNGC	2 cut(s)	226, 926
BlnI	CCTAGG	1 cut(s)	745
BlsI	GCNGC	2 cut(s)	227, 927
BmcAI	AGTACT	1 cut(s)	667
Bme1390I	CCNGG	3 cut(s)	236, 658, 806
Bme18I	GGWCC	1 cut(s)	660
BmeT110I	CYCGRG	1 cut(s)	1076
BmgT120I	GGNCC	1 cut(s)	660
BmiI	GGNNCC	2 cut(s)	220, 849
BmrFI	CCNGG	3 cut(s)	236, 658, 806
BmsI	GCATC	1 cut(s)	783
BpiI	GAAGAC	1 cut(s)	803
BplI	GAGNNNNNCTC	2 cut(s)	450, 482
BpmI	CTGGAG	2 cut(s)	205, 475
BpuEI	CTTGAG	3 cut(s)	167, 452, 911
BsaJI	CCNNGG	8 cut(s)	141, 234, 295, 607, 745, 805, 826, 843
Bsc4I	CCNNNNNNNGG	3 cut(s)	408, 805, 1005
Bse1I	ACTGG	2 cut(s)	191, 663
Bse21I	CCTNAGG	1 cut(s)	530
Bse3DI	GCAATG	2 cut(s)	910, 974
BseBI	CCWGG	3 cut(s)	236, 658, 806
BseDI	CCNNGG	8 cut(s)	141, 234, 295, 607, 745, 805, 826, 843
BseGI	GGATG	3 cut(s)	481, 774, 947
BseLI	CCNNNNNNNGG	3 cut(s)	408, 805, 1005
BseMI	GCAATG	2 cut(s)	910, 974
BseMII	CTCAG	1 cut(s)	221
BseNI	ACTGG	2 cut(s)	191, 663
BseXI	GCAGC	2 cut(s)	237, 912
BseYI	CCCAGC	1 cut(s)	403
Bsh1236I	CGCG	1 cut(s)	1093
BshFI	GGCC	2 cut(s)	511, 1009
BsiHKCI	CYCGRG	1 cut(s)	1076
BslFI	GGGAC	1 cut(s)	1067
BslI	CCNNNNNNNGG	3 cut(s)	408, 805, 1005
BsmAI	GTCTC	4 cut(s)	82, 167, 453, 960
BsmFI	GGGAC	1 cut(s)	1067
BsmI	GAATGC	1 cut(s)	750
BsnI	GGCC	2 cut(s)	511, 1009
BsoBI	CYCGRG	1 cut(s)	1076
Bsp143I	GATC	4 cut(s)	64, 230, 371, 883
Bsp19I	CCATGG	1 cut(s)	295
BspANI	GGCC	2 cut(s)	511, 1009
BspCNI	CTCAG	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	1093
BspLI	GGNNCC	2 cut(s)	220, 849
BspMAI	CTGCAG	1 cut(s)	78
BspMI	ACCTGC	1 cut(s)	81
BspPI	GGATC	1 cut(s)	225
BsrDI	GCAATG	2 cut(s)	910, 974
BsrI	ACTGG	2 cut(s)	191, 663
BssECI	CCNNGG	8 cut(s)	141, 234, 295, 607, 745, 805, 826, 843
BssMI	GATC	4 cut(s)	64, 230, 371, 883
BssT1I	CCWWGG	5 cut(s)	141, 295, 607, 745, 826
Bst2UI	CCWGG	3 cut(s)	236, 658, 806
Bst4CI	ACNGT	5 cut(s)	497, 541, 844, 1000, 1112
Bst6I	CTCTTC	1 cut(s)	789
BstAPI	GCANNNNNTGC	1 cut(s)	985
BstC8I	GCNNGC	3 cut(s)	724, 923, 986
BstDEI	CTNAG	3 cut(s)	207, 473, 530
BstDSI	CCRYGG	2 cut(s)	295, 843
BstEII	GGTNACC	1 cut(s)	838
BstF5I	GGATG	3 cut(s)	481, 774, 947
BstFNI	CGCG	1 cut(s)	1093
BstKTI	GATC	4 cut(s)	67, 233, 374, 886
BstMAI	GTCTC	4 cut(s)	82, 167, 453, 960
BstMBI	GATC	4 cut(s)	64, 230, 371, 883
BstMWI	GCNNNNNNNGC	4 cut(s)	56, 225, 404, 985
BstNI	CCWGG	3 cut(s)	236, 658, 806
BstNSI	RCATGY	2 cut(s)	385, 726
BstPI	GGTNACC	1 cut(s)	838
BstSCI	CCNGG	3 cut(s)	234, 656, 804
BstSFI	CTRYAG	1 cut(s)	74
BstUI	CGCG	1 cut(s)	1093
BstV1I	GCAGC	2 cut(s)	237, 912
BstV2I	GAAGAC	1 cut(s)	803
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	530
BsuRI	GGCC	2 cut(s)	511, 1009
BtgI	CCRYGG	2 cut(s)	295, 843
BtsCI	GGATG	3 cut(s)	481, 774, 947
BtsIMutI	CAGTG	1 cut(s)	502
BveI	ACCTGC	1 cut(s)	81
Cac8I	GCNNGC	3 cut(s)	724, 923, 986
Cfr13I	GGNCC	1 cut(s)	660
Csp6I	GTAC	4 cut(s)	130, 379, 639, 666
CviAII	CATG	5 cut(s)	62, 296, 382, 598, 723
CviQI	GTAC	4 cut(s)	130, 379, 639, 666
DdeI	CTNAG	3 cut(s)	207, 473, 530
DpnI	GATC	4 cut(s)	66, 232, 373, 885
DpnII	GATC	4 cut(s)	64, 230, 371, 883
EaeI	YGGCCR	1 cut(s)	509
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Eco130I	CCWWGG	5 cut(s)	141, 295, 607, 745, 826
Eco47I	GGWCC	1 cut(s)	660
Eco81I	CCTNAGG	1 cut(s)	530
Eco88I	CYCGRG	1 cut(s)	1076
Eco91I	GGTNACC	1 cut(s)	838
EcoO65I	GGTNACC	1 cut(s)	838
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	3 cut(s)	234, 656, 804
EcoT14I	CCWWGG	5 cut(s)	141, 295, 607, 745, 826
ErhI	CCWWGG	5 cut(s)	141, 295, 607, 745, 826
FaeI	CATG	5 cut(s)	65, 299, 385, 601, 726
FalI	AAGNNNNNCTT	2 cut(s)	1106, 1138
FaqI	GGGAC	1 cut(s)	1067
FatI	CATG	5 cut(s)	61, 295, 381, 597, 722
FbaI	TGATCA	2 cut(s)	64, 883
FblI	GTMKAC	1 cut(s)	1026
Fnu4HI	GCNGC	2 cut(s)	226, 926
FokI	GGATG	3 cut(s)	468, 761, 934
Fsp4HI	GCNGC	2 cut(s)	226, 926
FspBI	CTAG	4 cut(s)	114, 408, 578, 746
GluI	GCNGC	2 cut(s)	226, 926
GsaI	CCCAGC	1 cut(s)	407
GsuI	CTGGAG	2 cut(s)	205, 475
HaeIII	GGCC	2 cut(s)	511, 1009
Hin1II	CATG	5 cut(s)	65, 299, 385, 601, 726
HincII	GTYRAC	3 cut(s)	874, 943, 1027
HindII	GTYRAC	3 cut(s)	874, 943, 1027
HindIII	AAGCTT	2 cut(s)	421, 470
HinfI	GANTC	2 cut(s)	801, 960
HphI	GGTGA	4 cut(s)	718, 850, 893, 1005
Hpy166II	GTNNAC	6 cut(s)	526, 547, 709, 874, 943, 1027
Hpy188I	TCNGA	3 cut(s)	493, 766, 858
Hpy188III	TCNNGA	6 cut(s)	321, 578, 794, 890, 957, 1076
Hpy8I	GTNNAC	6 cut(s)	526, 547, 709, 874, 943, 1027
Hpy99I	CGWCG	2 cut(s)	1028, 1031
HpyAV	CCTTC	4 cut(s)	95, 513, 800, 1020
HpyCH4III	ACNGT	5 cut(s)	497, 541, 844, 1000, 1112
HpyCH4IV	ACGT	1 cut(s)	876
HpyCH4V	TGCA	6 cut(s)	76, 214, 722, 928, 979, 1126
HpyF10VI	GCNNNNNNNGC	4 cut(s)	56, 225, 404, 985
HpyF3I	CTNAG	3 cut(s)	207, 473, 530
HpySE526I	ACGT	1 cut(s)	876
Hsp92II	CATG	5 cut(s)	65, 299, 385, 601, 726
Ksp22I	TGATCA	2 cut(s)	64, 883
Kzo9I	GATC	4 cut(s)	64, 230, 371, 883
LmnI	GCTCC	1 cut(s)	224
Lsp1109I	GCAGC	2 cut(s)	237, 912
LweI	GCATC	1 cut(s)	783
MaeI	CTAG	4 cut(s)	114, 408, 578, 746
MaeII	ACGT	1 cut(s)	876
MaeIII	GTNAC	4 cut(s)	186, 838, 1046, 1094
MalI	GATC	4 cut(s)	66, 232, 373, 885
MboI	GATC	4 cut(s)	64, 230, 371, 883
MboII	GAAGA	4 cut(s)	278, 695, 776, 803
MflI	RGATCY	1 cut(s)	230
MlsI	TGGCCA	1 cut(s)	511
MluCI	AATT	9 cut(s)	31, 157, 269, 276, 566, 677, 859, 1069, 1136
MluNI	TGGCCA	1 cut(s)	511
MlyI	GAGTC	1 cut(s)	810
MmeI	TCCRAC	2 cut(s)	146, 567
MnlI	CCTC	7 cut(s)	98, 139, 260, 583, 768, 788, 1125
Mox20I	TGGCCA	1 cut(s)	511
MroXI	GAANNNNTTC	2 cut(s)	852, 863
MscI	TGGCCA	1 cut(s)	511
MseI	TTAA	2 cut(s)	426, 740
MslI	CAYNNNNRTG	1 cut(s)	96
Msp20I	TGGCCA	1 cut(s)	511
MspR9I	CCNGG	3 cut(s)	236, 658, 806
Mva1269I	GAATGC	1 cut(s)	750
MvaI	CCWGG	3 cut(s)	236, 658, 806
MvnI	CGCG	1 cut(s)	1093
MwoI	GCNNNNNNNGC	4 cut(s)	56, 225, 404, 985
NcoI	CCATGG	1 cut(s)	295
NdeII	GATC	4 cut(s)	64, 230, 371, 883
NlaIII	CATG	5 cut(s)	65, 299, 385, 601, 726
NlaIV	GGNNCC	2 cut(s)	220, 849
NmuCI	GTSAC	2 cut(s)	838, 1094
NspI	RCATGY	2 cut(s)	385, 726
OliI	CACNNNNGTG	1 cut(s)	96
PaeI	GCATGC	1 cut(s)	726
PaeR7I	CTCGAG	1 cut(s)	1076
PciI	ACATGT	1 cut(s)	381
PctI	GAATGC	1 cut(s)	750
PdmI	GAANNNNTTC	2 cut(s)	852, 863
PfeI	GAWTC	1 cut(s)	960
PflFI	GACNNNGTC	1 cut(s)	800
PkrI	GCNGC	2 cut(s)	227, 927
PleI	GAGTC	1 cut(s)	809
PpsI	GAGTC	1 cut(s)	809
PscI	ACATGT	1 cut(s)	381
Psp1406I	AACGTT	1 cut(s)	876
Psp6I	CCWGG	3 cut(s)	234, 656, 804
PspEI	GGTNACC	1 cut(s)	838
PspFI	CCCAGC	1 cut(s)	403
PspGI	CCWGG	3 cut(s)	234, 656, 804
PspN4I	GGNNCC	2 cut(s)	220, 849
PspPI	GGNCC	1 cut(s)	660
PstI	CTGCAG	1 cut(s)	78
PsuI	RGATCY	1 cut(s)	230
PsyI	GACNNNGTC	1 cut(s)	800
RsaI	GTAC	4 cut(s)	131, 380, 640, 667
RsaNI	GTAC	4 cut(s)	130, 379, 639, 666
RseI	CAYNNNNRTG	1 cut(s)	96
SalI	GTCGAC	1 cut(s)	1025
SaqAI	TTAA	2 cut(s)	426, 740
SatI	GCNGC	2 cut(s)	226, 926
Sau3AI	GATC	4 cut(s)	64, 230, 371, 883
Sau96I	GGNCC	1 cut(s)	660
ScaI	AGTACT	1 cut(s)	667
SchI	GAGTC	1 cut(s)	810
ScrFI	CCNGG	3 cut(s)	236, 658, 806
SfaNI	GCATC	1 cut(s)	783
SfcI	CTRYAG	1 cut(s)	74
Sfr274I	CTCGAG	1 cut(s)	1076
SgrDI	CGTCGACG	1 cut(s)	1025
SinI	GGWCC	1 cut(s)	660
SlaI	CTCGAG	1 cut(s)	1076
SmiMI	CAYNNNNRTG	1 cut(s)	96
SmlI	CTYRAG	4 cut(s)	182, 467, 890, 1076
SmoI	CTYRAG	4 cut(s)	182, 467, 890, 1076
SphI	GCATGC	1 cut(s)	726
Sse9I	AATT	9 cut(s)	31, 157, 269, 276, 566, 677, 859, 1069, 1136
SspMI	CTAG	4 cut(s)	114, 408, 578, 746
StyD4I	CCNGG	3 cut(s)	234, 656, 804
StyI	CCWWGG	5 cut(s)	141, 295, 607, 745, 826
TaaI	ACNGT	5 cut(s)	497, 541, 844, 1000, 1112
TaiI	ACGT	1 cut(s)	879
TaqI	TCGA	6 cut(s)	363, 958, 993, 1026, 1077, 1130
TaqII	GACCGA	1 cut(s)	813
TasI	AATT	9 cut(s)	31, 157, 269, 276, 566, 677, 859, 1069, 1136
TatI	WGTACW	3 cut(s)	129, 378, 665
TfiI	GAWTC	1 cut(s)	960
Tru1I	TTAA	2 cut(s)	426, 740
Tru9I	TTAA	2 cut(s)	426, 740
TscAI	CASTG	1 cut(s)	502
TseFI	GTSAC	2 cut(s)	838, 1094
TseI	GCWGC	2 cut(s)	225, 925
Tsp45I	GTSAC	2 cut(s)	838, 1094
TspDTI	ATGAA	6 cut(s)	324, 456, 690, 852, 856, 963
TspRI	CASTG	1 cut(s)	502
Tth111I	GACNNNGTC	1 cut(s)	800
VpaK11BI	GGWCC	1 cut(s)	660
XapI	RAATTY	5 cut(s)	269, 276, 566, 677, 859
XbaI	TCTAGA	1 cut(s)	577
XceI	RCATGY	2 cut(s)	385, 726
XhoI	CTCGAG	1 cut(s)	1076
XmaJI	CCTAGG	1 cut(s)	745
XmiI	GTMKAC	1 cut(s)	1026
XmnI	GAANNNNTTC	2 cut(s)	852, 863
XspI	CTAG	4 cut(s)	114, 408, 578, 746
ZrmI	AGTACT	1 cut(s)	667

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.