Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

15978730 .. 15981632

Gene Structure 2903 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG181400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTCTCCAGCAATGGCAGGTTTTACAACTGAGAATGAGGAGAGCCAGTACCAGAATGGAGTGAAGTGCTTGCATGAGAATGGAATAAGCAAAGTTCCAAGCAAGTACATACTGCCCGTATTGGAGCGACCCGGTATTACAAATCACGAGCAAGCAAATGTAACCAAGAATAATCTTAAGCTCCCCATCATTGACTTCCAAGAATTGCAGGGTCCCAATAGACCCCAAGTCCTTCAGTCCCTCGCCAATGCTTGTGAACAATACGGCTTCTTTCAGCTGGTAAACCATGACATTCCAAGCGATGTTATAAGCAATATGATCGAAGTGGGCACAAAGTTCTTTGAGCTACCGTTTGAGGAGAGAGCCAAGTACATGTCCTCGGATATGCGAGCTCCAGTTCGGTATGGAACTAGCTTTAACCAGAACAAGGATAAGGTGTTTTGTTGGAGGGACTTCTTGAAGCTATTGTGCCATCCCCTACCAGACGTTCTTCCTCACTGGCCTTCTTCACCTGTCGACATAAGGAATTTGGCGGCTACCTACGCAAAAGAAACCAAATACTTATTCCTAATGCTAATGGAGGCCATATTTGAGAGCTTAGGACTTGTGGATTCATCAGCTGCCAAGAAGAAAACGACAGAAGAAGATGAGGTGTTGAAAGAATTCGAAGATGGAAGCCAGCTAATGGTTGTCAATTGCTACCCGCCATGCCCAGAACCTGATCTAACCCTAGGGATGCCTCCTCACTCTGACTATGGATTCCTCACACTTCTTCTCCAAGATGAGGTAGAAGGACTTCAAATTCAATTCCAAGATAAATGGGTTACCGTTGAACCAATAGCCAACTCTTTCGTGGTCAACGTTGGTGATCATCTTGAGGTAAGTTTGAATAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

298

Amino Acids

33.75

Weight (kDa)

4.79

Isoelectric Point (pI)

51.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	61 - 166	2.5e-29	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	227 - 297	1.1e-22	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	8
AccB7I	CCANNNNNTGG	1 cut(s)	685
AccI	GTMKAC	1 cut(s)	516
AciI	CCGC	2 cut(s)	533, 704
AclI	AACGTT	1 cut(s)	861
AcsI	RAATTY	3 cut(s)	526, 662, 801
AcuI	CTGAAG	1 cut(s)	218
AfaI	GTAC	3 cut(s)	50, 107, 371
AfiI	CCNNNNNNNGG	3 cut(s)	427, 685, 784
AflII	CTTAAG	1 cut(s)	176
AflIII	ACRYGT	1 cut(s)	372
AgsI	TTSAA	6 cut(s)	460, 658, 800, 806, 833, 889
AhdI	GACNNNNNGTC	1 cut(s)	227
AjuI	GAANNNNNNNTTGG	2 cut(s)	548, 580
AluBI	AGCT	9 cut(s)	181, 277, 346, 392, 414, 463, 597, 620, 682
AluI	AGCT	9 cut(s)	181, 277, 346, 392, 414, 463, 597, 620, 682
Alw21I	GWGCWC	1 cut(s)	394
Alw26I	GTCTC	1 cut(s)	9
AlwNI	CAGNNNCTG	1 cut(s)	719
AoxI	GGCC	2 cut(s)	500, 582
ApeKI	GCWGC	1 cut(s)	620
ApoI	RAATTY	3 cut(s)	526, 662, 801
Asp700I	GAANNNNTTC	2 cut(s)	662, 795
AspA2I	CCTAGG	1 cut(s)	730
AspS9I	GGNCC	1 cut(s)	212
AsuC2I	CCSGG	1 cut(s)	132
AsuHPI	GGTGA	2 cut(s)	501, 878
AsuII	TTCGAA	1 cut(s)	666
AvaII	GGWCC	1 cut(s)	212
AvrII	CCTAGG	1 cut(s)	730
BaeGI	GKGCMC	1 cut(s)	332
BanII	GRGCYC	1 cut(s)	394
BarI	GAAGNNNNNNTAC	2 cut(s)	780, 812
BauI	CACGAG	1 cut(s)	146
Bbv12I	GWGCWC	1 cut(s)	394
BbvI	GCAGC	1 cut(s)	607
BccI	CCATC	3 cut(s)	194, 480, 665
BceAI	ACGGC	1 cut(s)	280
BcgI	CGANNNNNNTGC	2 cut(s)	301, 335
BclI	TGATCA	1 cut(s)	868
BcnI	CCSGG	1 cut(s)	132
BcoDI	GTCTC	1 cut(s)	9
BfaI	CTAG	2 cut(s)	411, 731
BfrI	CTTAAG	1 cut(s)	176
BfuAI	ACCTGC	1 cut(s)	8
BisI	GCNGC	2 cut(s)	534, 621
BlnI	CCTAGG	1 cut(s)	730
BlsI	GCNGC	2 cut(s)	535, 622
Bme1390I	CCNGG	1 cut(s)	132
Bme18I	GGWCC	1 cut(s)	212
BmeRI	GACNNNNNGTC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	212
BmiI	GGNNCC	2 cut(s)	213, 214
BmrFI	CCNGG	1 cut(s)	132
BmsI	GCATC	1 cut(s)	726
BpmI	CTGGAG	1 cut(s)	378
Bpu10I	CCTNAGC	1 cut(s)	598
Bpu14I	TTCGAA	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	896
BpuMI	CCSGG	1 cut(s)	132
BsaJI	CCNNGG	2 cut(s)	378, 730
BsaXI	ACNNNNNCTCC	4 cut(s)	32, 62, 759, 789
Bsc4I	CCNNNNNNNGG	3 cut(s)	427, 685, 784
Bse1I	ACTGG	3 cut(s)	46, 395, 503
Bse3DI	GCAATG	1 cut(s)	18
BseDI	CCNNGG	2 cut(s)	378, 730
BseGI	GGATG	2 cut(s)	472, 741
BseLI	CCNNNNNNNGG	3 cut(s)	427, 685, 784
BseMI	GCAATG	1 cut(s)	18
BseMII	CTCAG	1 cut(s)	21
BseNI	ACTGG	3 cut(s)	46, 395, 503
BseRI	GAGGAG	3 cut(s)	53, 371, 732
BseSI	GKGCMC	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	607
BshFI	GGCC	2 cut(s)	502, 584
BsiHKAI	GWGCWC	1 cut(s)	394
BsiSI	CCGG	1 cut(s)	132
BslFI	GGGAC	3 cut(s)	198, 223, 464
BslI	CCNNNNNNNGG	3 cut(s)	427, 685, 784
BsmAI	GTCTC	1 cut(s)	9
BsmFI	GGGAC	3 cut(s)	198, 223, 464
BsnI	GGCC	2 cut(s)	502, 584
Bsp119I	TTCGAA	1 cut(s)	666
Bsp1286I	GDGCHC	2 cut(s)	332, 394
Bsp143I	GATC	3 cut(s)	318, 721, 868
BspACI	CCGC	2 cut(s)	533, 704
BspANI	GGCC	2 cut(s)	502, 584
BspCNI	CTCAG	1 cut(s)	22
BspLI	GGNNCC	2 cut(s)	213, 214
BspMI	ACCTGC	1 cut(s)	8
BspT104I	TTCGAA	1 cut(s)	666
BspTI	CTTAAG	1 cut(s)	176
BsrDI	GCAATG	1 cut(s)	18
BsrI	ACTGG	3 cut(s)	46, 395, 503
BssECI	CCNNGG	2 cut(s)	378, 730
BssMI	GATC	3 cut(s)	318, 721, 868
BssSI	CACGAG	1 cut(s)	146
BssT1I	CCWWGG	1 cut(s)	730
Bst2BI	CACGAG	1 cut(s)	146
Bst4CI	ACNGT	2 cut(s)	351, 829
BstAFI	CTTAAG	1 cut(s)	176
BstBI	TTCGAA	1 cut(s)	666
BstC8I	GCNNGC	4 cut(s)	71, 153, 390, 680
BstDEI	CTNAG	2 cut(s)	30, 598
BstEII	GGTNACC	1 cut(s)	823
BstF5I	GGATG	2 cut(s)	472, 741
BstKTI	GATC	3 cut(s)	321, 724, 871
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	3 cut(s)	318, 721, 868
BstMWI	GCNNNNNNNGC	1 cut(s)	542
BstNSI	RCATGY	1 cut(s)	376
BstPI	GGTNACC	1 cut(s)	823
BstSCI	CCNGG	1 cut(s)	130
BstSLI	GKGCMC	1 cut(s)	332
BstV1I	GCAGC	1 cut(s)	607
BsuRI	GGCC	2 cut(s)	502, 584
BtgZI	GCGATG	1 cut(s)	315
BtsCI	GGATG	2 cut(s)	472, 741
BtsIMutI	CAGTG	1 cut(s)	496
BveI	ACCTGC	1 cut(s)	8
Cac8I	GCNNGC	4 cut(s)	71, 153, 390, 680
CaiI	CAGNNNCTG	1 cut(s)	719
Cfr13I	GGNCC	1 cut(s)	212
Csp6I	GTAC	3 cut(s)	49, 106, 370
CviAII	CATG	4 cut(s)	74, 287, 373, 708
CviQI	GTAC	3 cut(s)	49, 106, 370
DdeI	CTNAG	2 cut(s)	30, 598
DpnI	GATC	3 cut(s)	320, 723, 870
DpnII	GATC	3 cut(s)	318, 721, 868
DriI	GACNNNNNGTC	1 cut(s)	227
Eam1105I	GACNNNNNGTC	1 cut(s)	227
Ecl136II	GAGCTC	1 cut(s)	392
Eco130I	CCWWGG	1 cut(s)	730
Eco24I	GRGCYC	1 cut(s)	394
Eco47I	GGWCC	1 cut(s)	212
Eco53kI	GAGCTC	1 cut(s)	392
Eco57I	CTGAAG	1 cut(s)	218
Eco91I	GGTNACC	1 cut(s)	823
EcoICRI	GAGCTC	1 cut(s)	392
EcoO109I	RGGNCCY	1 cut(s)	212
EcoO65I	GGTNACC	1 cut(s)	823
EcoRI	GAATTC	1 cut(s)	662
EcoT14I	CCWWGG	1 cut(s)	730
EcoT38I	GRGCYC	1 cut(s)	394
ErhI	CCWWGG	1 cut(s)	730
FaeI	CATG	4 cut(s)	77, 290, 376, 711
FaqI	GGGAC	3 cut(s)	198, 223, 464
FatI	CATG	4 cut(s)	73, 286, 372, 707
FauI	CCCGC	1 cut(s)	711
FbaI	TGATCA	1 cut(s)	868
FblI	GTMKAC	1 cut(s)	516
Fnu4HI	GCNGC	2 cut(s)	534, 621
FokI	GGATG	2 cut(s)	459, 748
FriOI	GRGCYC	1 cut(s)	394
Fsp4HI	GCNGC	2 cut(s)	534, 621
FspBI	CTAG	2 cut(s)	411, 731
GluI	GCNGC	2 cut(s)	534, 621
GsuI	CTGGAG	1 cut(s)	378
HaeIII	GGCC	2 cut(s)	502, 584
HapII	CCGG	1 cut(s)	132
Hin1II	CATG	4 cut(s)	77, 290, 376, 711
HincII	GTYRAC	2 cut(s)	517, 859
HindII	GTYRAC	2 cut(s)	517, 859
HinfI	GANTC	2 cut(s)	611, 759
HpaII	CCGG	1 cut(s)	132
HphI	GGTGA	2 cut(s)	501, 878
Hpy166II	GTNNAC	4 cut(s)	257, 283, 517, 859
Hpy188I	TCNGA	2 cut(s)	382, 751
Hpy188III	TCNNGA	3 cut(s)	146, 457, 875
Hpy8I	GTNNAC	4 cut(s)	257, 283, 517, 859
HpyAV	CCTTC	3 cut(s)	242, 513, 785
HpyCH4III	ACNGT	2 cut(s)	351, 829
HpyCH4IV	ACGT	2 cut(s)	486, 861
HpyCH4V	TGCA	2 cut(s)	73, 208
HpyF10VI	GCNNNNNNNGC	1 cut(s)	542
HpyF3I	CTNAG	2 cut(s)	30, 598
HpySE526I	ACGT	2 cut(s)	486, 861
Hsp92II	CATG	4 cut(s)	77, 290, 376, 711
KflI	GGGWCCC	1 cut(s)	212
Ksp22I	TGATCA	1 cut(s)	868
Kzo9I	GATC	3 cut(s)	318, 721, 868
LmnI	GCTCC	3 cut(s)	124, 186, 397
Lsp1109I	GCAGC	1 cut(s)	607
LweI	GCATC	1 cut(s)	726
MaeI	CTAG	2 cut(s)	411, 731
MaeII	ACGT	2 cut(s)	486, 861
MaeIII	GTNAC	2 cut(s)	160, 823
MalI	GATC	3 cut(s)	320, 723, 870
MboI	GATC	3 cut(s)	318, 721, 868
MboII	GAAGA	7 cut(s)	482, 498, 640, 653, 656, 680, 764
MfeI	CAATTG	1 cut(s)	694
MhlI	GDGCHC	2 cut(s)	332, 394
MluCI	AATT	7 cut(s)	203, 526, 662, 694, 801, 806, 892
MmeI	TCCRAC	1 cut(s)	425
MroXI	GAANNNNTTC	2 cut(s)	662, 795
MseI	TTAA	2 cut(s)	177, 417
MslI	CAYNNNNRTG	1 cut(s)	78
MspA1I	CMGCKG	2 cut(s)	277, 620
MspCI	CTTAAG	1 cut(s)	176
MspI	CCGG	1 cut(s)	132
MspR9I	CCNGG	1 cut(s)	132
MunI	CAATTG	1 cut(s)	694
MwoI	GCNNNNNNNGC	1 cut(s)	542
NciI	CCSGG	1 cut(s)	132
NdeII	GATC	3 cut(s)	318, 721, 868
NlaIII	CATG	4 cut(s)	77, 290, 376, 711
NlaIV	GGNNCC	2 cut(s)	213, 214
NspI	RCATGY	1 cut(s)	376
NspV	TTCGAA	1 cut(s)	666
PciI	ACATGT	1 cut(s)	372
PcsI	WCGNNNNNNNCGW	1 cut(s)	858
PdmI	GAANNNNTTC	2 cut(s)	662, 795
PfeI	GAWTC	2 cut(s)	611, 759
PflMI	CCANNNNNTGG	1 cut(s)	685
PkrI	GCNGC	2 cut(s)	535, 622
PpuMI	RGGWCCY	1 cut(s)	212
PscI	ACATGT	1 cut(s)	372
PsiI	TTATAA	1 cut(s)	308
Psp124BI	GAGCTC	1 cut(s)	394
Psp1406I	AACGTT	1 cut(s)	861
Psp5II	RGGWCCY	1 cut(s)	212
PspEI	GGTNACC	1 cut(s)	823
PspN4I	GGNNCC	2 cut(s)	213, 214
PspPI	GGNCC	1 cut(s)	212
PspPPI	RGGWCCY	1 cut(s)	212
PstNI	CAGNNNCTG	1 cut(s)	719
PvuII	CAGCTG	2 cut(s)	277, 620
RsaI	GTAC	3 cut(s)	50, 107, 371
RsaNI	GTAC	3 cut(s)	49, 106, 370
RseI	CAYNNNNRTG	1 cut(s)	78
SacI	GAGCTC	1 cut(s)	394
SalI	GTCGAC	1 cut(s)	515
SaqAI	TTAA	2 cut(s)	177, 417
SatI	GCNGC	2 cut(s)	534, 621
Sau3AI	GATC	3 cut(s)	318, 721, 868
Sau96I	GGNCC	1 cut(s)	212
ScrFI	CCNGG	1 cut(s)	132
SduI	GDGCHC	2 cut(s)	332, 394
SfaNI	GCATC	1 cut(s)	726
SfuI	TTCGAA	1 cut(s)	666
SinI	GGWCC	1 cut(s)	212
SmiMI	CAYNNNNRTG	1 cut(s)	78
SmlI	CTYRAG	2 cut(s)	176, 875
SmoI	CTYRAG	2 cut(s)	176, 875
Sse9I	AATT	7 cut(s)	203, 526, 662, 694, 801, 806, 892
SsiI	CCGC	2 cut(s)	533, 704
SspMI	CTAG	2 cut(s)	411, 731
SstI	GAGCTC	1 cut(s)	394
StyD4I	CCNGG	1 cut(s)	130
StyI	CCWWGG	1 cut(s)	730
TaaI	ACNGT	2 cut(s)	351, 829
TaiI	ACGT	2 cut(s)	489, 864
TaqI	TCGA	3 cut(s)	321, 516, 666
TasI	AATT	7 cut(s)	203, 526, 662, 694, 801, 806, 892
TatI	WGTACW	2 cut(s)	105, 369
TauI	GCSGC	1 cut(s)	536
TfiI	GAWTC	2 cut(s)	611, 759
Tru1I	TTAA	2 cut(s)	177, 417
Tru9I	TTAA	2 cut(s)	177, 417
TscAI	CASTG	1 cut(s)	503
TseI	GCWGC	1 cut(s)	620
TspDTI	ATGAA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	503
Van91I	CCANNNNNTGG	1 cut(s)	685
Vha464I	CTTAAG	1 cut(s)	176
VpaK11BI	GGWCC	1 cut(s)	212
XapI	RAATTY	3 cut(s)	526, 662, 801
XceI	RCATGY	1 cut(s)	376
XcmI	CCANNNNNNNNNTGG	2 cut(s)	53, 850
XmaJI	CCTAGG	1 cut(s)	730
XmiI	GTMKAC	1 cut(s)	516
XmnI	GAANNNNTTC	2 cut(s)	662, 795
XspI	CTAG	2 cut(s)	411, 731

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.