Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003921

Physical Location & Seq

Genomic Coordinates Reverse (-)

31622195 .. 31626573

Gene Structure 4379 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG151300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGTTCATCGGCAAACGAGAATTTGGAATTTTTCAGTTGATAAACCATGGTATCACAGATGAAGTTATATCAAGAATGGCTGATGTAAGTAAAAGGTTTTTTGAGCTTCCTTTCGATGAGAGATCAAAGTACATGTCAAAGGATATGGCTTCCCCAGCTAGGTATGGAACAAGCTTTAACCAAAACAATGATGAAGTGTTCTGCTGGAGAGACTTTCTCAAGCTTAGTTGCCATCCTTTATCAGACAGTGTTCCTTCTTGGCCATCATCTCCTGTGGACCTAAGGGAAACAGTAGTGAACTATTCAAAGAACACGAAATTTTTGTATCTAGAGCTGTTGGAGGCTGTCATGGAGAGCCTTGGATTGATGGAAACTACAAAGAGTTCTGGTACAGAGAAAATAGACACCAGGACCAGTACTTTAGAAGAATTTGAAGATGGAAGCCAACTGATTGTGGTGAACTGCTACCCTGCATGCCCTGAACCTGATTTAACCCTAGGCATTCCACCTCATTCTGATTATGGCATCCTCACTCTTCTCCTTCAAGACCGAGTCCAGGGTCTTCAAATACAGCACCAAGGAAAATGGGTGACCGTGGAACCACTTCCGAATTCATTCATCGTCAACGTTGGTGATCATCTTGAGATATTTAGCAATGGGAGATACAAAAGCGTGCTGCATAGGGTTGTTGTCAACTCATCCAAGTCTCGAATCTCTGTTGCTTCATTGCACAGCCTGCCATTCGACACCGTTGTTCGGCCTTCACTTAAACTCGTCGACGAAGCCAACCCTATTCGTTACAGGGACACAGACTTTGCCAATTTTCTCGAGTATATTGCTTCGCGTGACCACCAGACGAACAGTAAGAGTTTCTTGCAATCGAGGAAATTGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

2OG-FeII_Oxy DIOX_N

Protein Analysis

298

Amino Acids

33.95

Weight (kDa)

5.79

Isoelectric Point (pI)

39.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DIOX_N	PF14226	6 - 86	5.2e-19	non-haem dioxygenase in morphine synthesis N-terminal
2OG-FeII_Oxy	PF03171	149 - 243	1.1e-35	2OG-Fe(II) oxygenase superfamily

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003921)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36690 AT2G36690
fragaria_vesca	FvH4_6g17160 FvH4_7g06780 FvH4_7g06780
malus_domestica	MD07G1074700.v1.1 MD12G1103300.v1.1
prunus_persica	Prupe.2G095000_v2.0.a1 Prupe.7G123400_v2.0.a1 Prupe.7G123400_v2.0.a1
pyrus_communis	pycom07g05870 pycom12g10180
rosa_chinensis	RchiOBHm_Chr1g0336381 RchiOBHm_Chr3g0471251
rosa_laevigata	RLG00000024194 RLG00000029370
rosa_multiflora	Rmu_sc0000393.1_g000004 Rmu_sc0000393.1_g000005 Rmu_sc0004870.1_g000002 Rmu_sc0005261.1_g000001
rosa_roxburghii	Rroxscaffold_4G00315710 Rroxscaffold_6G00410170
rosa_rugosa	Rorug01G0125400 Rorug03G0116300
rosa_samantha	Rh1AG144600 Rh1BG114200 Rh1CG136100 Rh1DG151300 Rh3AG165700 Rh3BG191100 Rh3CG181400 Rh3DG184600
rosa_wichuraiana	Rw1G011860 Rw3G015600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	777
AccII	CGCG	1 cut(s)	844
AclI	AACGTT	1 cut(s)	627
AcoI	YGGCCR	1 cut(s)	260
AcsI	RAATTY	5 cut(s)	20, 27, 317, 428, 610
AfaI	GTAC	3 cut(s)	131, 391, 418
AfiI	CCNNNNNNNGG	3 cut(s)	159, 556, 756
AflIII	ACRYGT	1 cut(s)	132
AgsI	TTSAA	4 cut(s)	306, 434, 545, 566
AjnI	CCWGG	2 cut(s)	407, 555
AluBI	AGCT	5 cut(s)	106, 158, 174, 223, 334
AluI	AGCT	5 cut(s)	106, 158, 174, 223, 334
Alw26I	GTCTC	2 cut(s)	204, 711
Ama87I	CYCGRG	1 cut(s)	827
AoxI	GGCC	2 cut(s)	260, 758
ApeKI	GCWGC	1 cut(s)	676
ApoI	RAATTY	5 cut(s)	20, 27, 317, 428, 610
ArsI	GACNNNNNNTTYG	4 cut(s)	119, 151, 797, 829
Asp700I	GAANNNNTTC	2 cut(s)	603, 614
AspA2I	CCTAGG	1 cut(s)	496
AspS9I	GGNCC	2 cut(s)	277, 411
AsuHPI	GGTGA	3 cut(s)	469, 601, 644
AvaI	CYCGRG	1 cut(s)	827
AvaII	GGWCC	2 cut(s)	277, 411
AvrII	CCTAGG	1 cut(s)	496
AxyI	CCTNAGG	1 cut(s)	281
BaeI	ACNNNNGTAYC	2 cut(s)	34, 67
BalI	TGGCCA	1 cut(s)	262
BbsI	GAAGAC	1 cut(s)	554
BbvI	GCAGC	1 cut(s)	663
BccI	CCATC	4 cut(s)	240, 271, 361, 431
BcgI	CGANNNNNNTGC	2 cut(s)	818, 852
BciT130I	CCWGG	2 cut(s)	409, 557
BclI	TGATCA	1 cut(s)	634
BcoDI	GTCTC	2 cut(s)	204, 711
BfaI	CTAG	3 cut(s)	159, 329, 497
BisI	GCNGC	1 cut(s)	677
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	1 cut(s)	678
BmcAI	AGTACT	1 cut(s)	418
Bme1390I	CCNGG	2 cut(s)	409, 557
Bme18I	GGWCC	2 cut(s)	277, 411
BmeT110I	CYCGRG	1 cut(s)	827
BmgT120I	GGNCC	2 cut(s)	277, 411
BmiI	GGNNCC	1 cut(s)	600
BmrFI	CCNGG	2 cut(s)	409, 557
BmsI	GCATC	1 cut(s)	534
BpiI	GAAGAC	1 cut(s)	554
BplI	GAGNNNNNCTC	2 cut(s)	201, 233
BpmI	CTGGAG	1 cut(s)	226
BpuEI	CTTGAG	2 cut(s)	203, 662
BsaJI	CCNNGG	6 cut(s)	46, 358, 496, 556, 577, 594
Bsc4I	CCNNNNNNNGG	3 cut(s)	159, 556, 756
Bse1I	ACTGG	1 cut(s)	414
Bse21I	CCTNAGG	1 cut(s)	281
Bse3DI	GCAATG	2 cut(s)	661, 725
BseBI	CCWGG	2 cut(s)	409, 557
BseDI	CCNNGG	6 cut(s)	46, 358, 496, 556, 577, 594
BseGI	GGATG	3 cut(s)	232, 525, 698
BseLI	CCNNNNNNNGG	3 cut(s)	159, 556, 756
BseMI	GCAATG	2 cut(s)	661, 725
BseNI	ACTGG	1 cut(s)	414
BseXI	GCAGC	1 cut(s)	663
BseYI	CCCAGC	1 cut(s)	154
Bsh1236I	CGCG	1 cut(s)	844
BshFI	GGCC	2 cut(s)	262, 760
BsiHKCI	CYCGRG	1 cut(s)	827
BslFI	GGGAC	1 cut(s)	818
BslI	CCNNNNNNNGG	3 cut(s)	159, 556, 756
BsmAI	GTCTC	2 cut(s)	204, 711
BsmFI	GGGAC	1 cut(s)	818
BsmI	GAATGC	1 cut(s)	501
BsnI	GGCC	2 cut(s)	262, 760
BsoBI	CYCGRG	1 cut(s)	827
Bsp143I	GATC	2 cut(s)	122, 634
Bsp19I	CCATGG	1 cut(s)	46
BspANI	GGCC	2 cut(s)	262, 760
BspFNI	CGCG	1 cut(s)	844
BspLI	GGNNCC	1 cut(s)	600
BsrDI	GCAATG	2 cut(s)	661, 725
BsrI	ACTGG	1 cut(s)	414
BssECI	CCNNGG	6 cut(s)	46, 358, 496, 556, 577, 594
BssMI	GATC	2 cut(s)	122, 634
BssT1I	CCWWGG	4 cut(s)	46, 358, 496, 577
Bst2UI	CCWGG	2 cut(s)	409, 557
Bst4CI	ACNGT	5 cut(s)	248, 292, 595, 751, 863
Bst6I	CTCTTC	1 cut(s)	540
BstAPI	GCANNNNNTGC	1 cut(s)	736
BstC8I	GCNNGC	3 cut(s)	475, 674, 737
BstDEI	CTNAG	2 cut(s)	224, 281
BstDSI	CCRYGG	2 cut(s)	46, 594
BstEII	GGTNACC	1 cut(s)	589
BstF5I	GGATG	3 cut(s)	232, 525, 698
BstFNI	CGCG	1 cut(s)	844
BstKTI	GATC	2 cut(s)	125, 637
BstMAI	GTCTC	2 cut(s)	204, 711
BstMBI	GATC	2 cut(s)	122, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	155, 736
BstNI	CCWGG	2 cut(s)	409, 557
BstNSI	RCATGY	2 cut(s)	136, 477
BstPI	GGTNACC	1 cut(s)	589
BstSCI	CCNGG	2 cut(s)	407, 555
BstUI	CGCG	1 cut(s)	844
BstV1I	GCAGC	1 cut(s)	663
BstV2I	GAAGAC	1 cut(s)	554
Bsu36I	CCTNAGG	1 cut(s)	281
BsuRI	GGCC	2 cut(s)	262, 760
BtgI	CCRYGG	2 cut(s)	46, 594
BtsCI	GGATG	3 cut(s)	232, 525, 698
BtsIMutI	CAGTG	1 cut(s)	253
Cac8I	GCNNGC	3 cut(s)	475, 674, 737
Cfr13I	GGNCC	2 cut(s)	277, 411
Csp6I	GTAC	3 cut(s)	130, 390, 417
CviAII	CATG	4 cut(s)	47, 133, 349, 474
CviQI	GTAC	3 cut(s)	130, 390, 417
DdeI	CTNAG	2 cut(s)	224, 281
DpnI	GATC	2 cut(s)	124, 636
DpnII	GATC	2 cut(s)	122, 634
EaeI	YGGCCR	1 cut(s)	260
Eam1104I	CTCTTC	1 cut(s)	540
EarI	CTCTTC	1 cut(s)	540
Eco130I	CCWWGG	4 cut(s)	46, 358, 496, 577
Eco47I	GGWCC	2 cut(s)	277, 411
Eco81I	CCTNAGG	1 cut(s)	281
Eco88I	CYCGRG	1 cut(s)	827
Eco91I	GGTNACC	1 cut(s)	589
EcoO65I	GGTNACC	1 cut(s)	589
EcoRI	GAATTC	1 cut(s)	610
EcoRII	CCWGG	2 cut(s)	407, 555
EcoT14I	CCWWGG	4 cut(s)	46, 358, 496, 577
ErhI	CCWWGG	4 cut(s)	46, 358, 496, 577
FaeI	CATG	4 cut(s)	50, 136, 352, 477
FalI	AAGNNNNNCTT	2 cut(s)	857, 889
FaqI	GGGAC	1 cut(s)	818
FatI	CATG	4 cut(s)	46, 132, 348, 473
FbaI	TGATCA	1 cut(s)	634
FblI	GTMKAC	1 cut(s)	777
Fnu4HI	GCNGC	1 cut(s)	677
FokI	GGATG	3 cut(s)	219, 512, 685
Fsp4HI	GCNGC	1 cut(s)	677
FspBI	CTAG	3 cut(s)	159, 329, 497
GluI	GCNGC	1 cut(s)	677
GsaI	CCCAGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	226
HaeIII	GGCC	2 cut(s)	262, 760
Hin1II	CATG	4 cut(s)	50, 136, 352, 477
HincII	GTYRAC	3 cut(s)	625, 694, 778
HindII	GTYRAC	3 cut(s)	625, 694, 778
HindIII	AAGCTT	2 cut(s)	172, 221
HinfI	GANTC	2 cut(s)	552, 711
HphI	GGTGA	3 cut(s)	469, 601, 644
Hpy166II	GTNNAC	6 cut(s)	277, 298, 460, 625, 694, 778
Hpy188I	TCNGA	3 cut(s)	244, 517, 609
Hpy188III	TCNNGA	6 cut(s)	72, 329, 545, 641, 708, 827
Hpy8I	GTNNAC	6 cut(s)	277, 298, 460, 625, 694, 778
Hpy99I	CGWCG	2 cut(s)	779, 782
HpyAV	CCTTC	3 cut(s)	264, 551, 771
HpyCH4III	ACNGT	5 cut(s)	248, 292, 595, 751, 863
HpyCH4IV	ACGT	1 cut(s)	627
HpyCH4V	TGCA	4 cut(s)	473, 679, 730, 877
HpyF10VI	GCNNNNNNNGC	2 cut(s)	155, 736
HpyF3I	CTNAG	2 cut(s)	224, 281
HpySE526I	ACGT	1 cut(s)	627
Hsp92II	CATG	4 cut(s)	50, 136, 352, 477
Ksp22I	TGATCA	1 cut(s)	634
Kzo9I	GATC	2 cut(s)	122, 634
Lsp1109I	GCAGC	1 cut(s)	663
LweI	GCATC	1 cut(s)	534
MaeI	CTAG	3 cut(s)	159, 329, 497
MaeII	ACGT	1 cut(s)	627
MaeIII	GTNAC	3 cut(s)	589, 797, 845
MalI	GATC	2 cut(s)	124, 636
MboI	GATC	2 cut(s)	122, 634
MboII	GAAGA	4 cut(s)	437, 446, 527, 554
MlsI	TGGCCA	1 cut(s)	262
MluCI	AATT	7 cut(s)	20, 27, 317, 428, 610, 820, 887
MluNI	TGGCCA	1 cut(s)	262
MlyI	GAGTC	1 cut(s)	561
MmeI	TCCRAC	1 cut(s)	318
MnlI	CCTC	4 cut(s)	334, 519, 539, 876
Mox20I	TGGCCA	1 cut(s)	262
MroXI	GAANNNNTTC	2 cut(s)	603, 614
MscI	TGGCCA	1 cut(s)	262
MseI	TTAA	3 cut(s)	177, 491, 768
Msp20I	TGGCCA	1 cut(s)	262
MspR9I	CCNGG	2 cut(s)	409, 557
Mva1269I	GAATGC	1 cut(s)	501
MvaI	CCWGG	2 cut(s)	409, 557
MvnI	CGCG	1 cut(s)	844
MwoI	GCNNNNNNNGC	2 cut(s)	155, 736
NcoI	CCATGG	1 cut(s)	46
NdeII	GATC	2 cut(s)	122, 634
NlaIII	CATG	4 cut(s)	50, 136, 352, 477
NlaIV	GGNNCC	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	589, 845
NspI	RCATGY	2 cut(s)	136, 477
PaeI	GCATGC	1 cut(s)	477
PaeR7I	CTCGAG	1 cut(s)	827
PciI	ACATGT	1 cut(s)	132
PctI	GAATGC	1 cut(s)	501
PdmI	GAANNNNTTC	2 cut(s)	603, 614
PfeI	GAWTC	1 cut(s)	711
PflFI	GACNNNGTC	1 cut(s)	551
PkrI	GCNGC	1 cut(s)	678
PleI	GAGTC	1 cut(s)	560
PpsI	GAGTC	1 cut(s)	560
PscI	ACATGT	1 cut(s)	132
Psp1406I	AACGTT	1 cut(s)	627
Psp6I	CCWGG	2 cut(s)	407, 555
PspEI	GGTNACC	1 cut(s)	589
PspFI	CCCAGC	1 cut(s)	154
PspGI	CCWGG	2 cut(s)	407, 555
PspN4I	GGNNCC	1 cut(s)	600
PspPI	GGNCC	2 cut(s)	277, 411
PsyI	GACNNNGTC	1 cut(s)	551
RsaI	GTAC	3 cut(s)	131, 391, 418
RsaNI	GTAC	3 cut(s)	130, 390, 417
SalI	GTCGAC	1 cut(s)	776
SaqAI	TTAA	3 cut(s)	177, 491, 768
SatI	GCNGC	1 cut(s)	677
Sau3AI	GATC	2 cut(s)	122, 634
Sau96I	GGNCC	2 cut(s)	277, 411
ScaI	AGTACT	1 cut(s)	418
SchI	GAGTC	1 cut(s)	561
ScrFI	CCNGG	2 cut(s)	409, 557
SfaNI	GCATC	1 cut(s)	534
Sfr274I	CTCGAG	1 cut(s)	827
SgrDI	CGTCGACG	1 cut(s)	776
SinI	GGWCC	2 cut(s)	277, 411
SlaI	CTCGAG	1 cut(s)	827
SmlI	CTYRAG	3 cut(s)	218, 641, 827
SmoI	CTYRAG	3 cut(s)	218, 641, 827
SphI	GCATGC	1 cut(s)	477
Sse9I	AATT	7 cut(s)	20, 27, 317, 428, 610, 820, 887
SspMI	CTAG	3 cut(s)	159, 329, 497
StyD4I	CCNGG	2 cut(s)	407, 555
StyI	CCWWGG	4 cut(s)	46, 358, 496, 577
TaaI	ACNGT	5 cut(s)	248, 292, 595, 751, 863
TaiI	ACGT	1 cut(s)	630
TaqI	TCGA	6 cut(s)	114, 709, 744, 777, 828, 881
TaqII	GACCGA	1 cut(s)	564
TasI	AATT	7 cut(s)	20, 27, 317, 428, 610, 820, 887
TatI	WGTACW	2 cut(s)	129, 416
TfiI	GAWTC	1 cut(s)	711
Tru1I	TTAA	3 cut(s)	177, 491, 768
Tru9I	TTAA	3 cut(s)	177, 491, 768
TscAI	CASTG	1 cut(s)	253
TseFI	GTSAC	2 cut(s)	589, 845
TseI	GCWGC	1 cut(s)	676
Tsp45I	GTSAC	2 cut(s)	589, 845
TspDTI	ATGAA	5 cut(s)	75, 207, 603, 607, 714
TspRI	CASTG	1 cut(s)	253
Tth111I	GACNNNGTC	1 cut(s)	551
VpaK11BI	GGWCC	2 cut(s)	277, 411
XapI	RAATTY	5 cut(s)	20, 27, 317, 428, 610
XbaI	TCTAGA	1 cut(s)	328
XceI	RCATGY	2 cut(s)	136, 477
XhoI	CTCGAG	1 cut(s)	827
XmaJI	CCTAGG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	777
XmnI	GAANNNNTTC	2 cut(s)	603, 614
XspI	CTAG	3 cut(s)	159, 329, 497
ZrmI	AGTACT	1 cut(s)	418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.