Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0008059

Physical Location & Seq

Genomic Coordinates Reverse (-)

9484612 .. 9484953

Gene Structure 342 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g10020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGAAGGGCATTGTGATCTCAATGTTTCTTGTGCTAGCCACGGTTCACCTAATGGTGCATCAAGGGGAGGCAGTTGACTGCACCCAAGTGAGGAACTCGTTGATGCCTTGCGTTCCATACTTGATTGGCAAGGAACCCGAACCCGCAGATAAGTGCTGCAGTGGGGTGAGTGACATCAAGTCACTTGCCCAGACCACAAAGGACCGTCAGGATGTCTGCGAATGTGTTAAGGCAGCGGCCGCTCACATTCCCATTGATCAAAAAGCAGCCGCTGCACTCCCAAACAAGTGCCGTATAGACATTGGAATTCCAATCTCACCGGACACCTACTGTCAGCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

114

Amino Acids

12.17

Weight (kDa)

6.25

Isoelectric Point (pI)

30.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	13 - 100	1.9e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 102	8.9e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59330
fragaria_vesca	FvH4_7g10020
malus_domestica	MD02G1211600.v1.1 MD07G1105600.v1.1 MD09G1144900.v1.1 MD17G1131400.v1.1
prunus_persica	Prupe.2G129200_v2.0.a1 Prupe.3G183000_v2.0.a1
pyrus_communis	pycom02g17710 pycom07g09010 pycom07g09080 pycom09g06430 pycom17g12420
rosa_chinensis	RchiOBHm_Chr1g0347601
rosa_laevigata	RLG00000028734
rosa_multiflora	Rmu_sc0006589.1_g000010 Rmu_sc0010621.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307610
rosa_rugosa	Rorug01G0188200
rosa_samantha	Rh1AG205100 Rh1BG171000 Rh1CG190400 Rh1DG201200
rosa_wichuraiana	Rw0G018180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	242
AciI	CCGC	4 cut(s)	144, 236, 240, 270
AcoI	YGGCCR	1 cut(s)	237
AcsI	RAATTY	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	90
AhdI	GACNNNNNGTC	1 cut(s)	178
AleI	CACNNNNGTG	1 cut(s)	86
AlwNI	CAGNNNCTG	1 cut(s)	272
AoxI	GGCC	1 cut(s)	237
ApeKI	GCWGC	4 cut(s)	156, 233, 266, 272
ApoI	RAATTY	1 cut(s)	306
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	3 cut(s)	38, 178, 309
AsuNHI	GCTAGC	1 cut(s)	34
AvaII	GGWCC	1 cut(s)	202
BbvI	GCAGC	4 cut(s)	143, 245, 259, 278
BceAI	ACGGC	1 cut(s)	276
BclI	TGATCA	1 cut(s)	256
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	157
BisI	GCNGC	7 cut(s)	157, 234, 237, 240, 267, 270, 273
BlsI	GCNGC	7 cut(s)	158, 235, 238, 241, 268, 271, 274
Bme18I	GGWCC	1 cut(s)	202
BmeRI	GACNNNNNGTC	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	202
BmiI	GGNNCC	1 cut(s)	135
BmsI	GCATC	2 cut(s)	67, 93
BmtI	GCTAGC	1 cut(s)	38
BsaJI	CCNNGG	1 cut(s)	39
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	1 cut(s)	90
BseDI	CCNNGG	1 cut(s)	39
BseGI	GGATG	1 cut(s)	217
BseLI	CCNNNNNNNGG	1 cut(s)	90
BseX3I	CGGCCG	1 cut(s)	237
BseXI	GCAGC	4 cut(s)	143, 245, 259, 278
BsgI	GTGCAG	2 cut(s)	64, 258
Bsh1285I	CGRYCG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	239
BsiEI	CGRYCG	1 cut(s)	240
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	90
BsnI	GGCC	1 cut(s)	239
Bsp143I	GATC	2 cut(s)	15, 256
BspACI	CCGC	4 cut(s)	144, 236, 240, 270
BspANI	GGCC	1 cut(s)	239
BspLI	GGNNCC	1 cut(s)	135
BspMAI	CTGCAG	1 cut(s)	161
BspOI	GCTAGC	1 cut(s)	38
BsrBI	CCGCTC	1 cut(s)	242
BssECI	CCNNGG	1 cut(s)	39
BssMI	GATC	2 cut(s)	15, 256
Bst4CI	ACNGT	3 cut(s)	43, 206, 332
BstAPI	GCANNNNNTGC	1 cut(s)	272
BstC8I	GCNNGC	1 cut(s)	36
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	217
BstKTI	GATC	2 cut(s)	18, 259
BstMBI	GATC	2 cut(s)	15, 256
BstMCI	CGRYCG	1 cut(s)	240
BstMWI	GCNNNNNNNGC	2 cut(s)	239, 272
BstSFI	CTRYAG	1 cut(s)	157
BstV1I	GCAGC	4 cut(s)	143, 245, 259, 278
BstZI	CGGCCG	1 cut(s)	237
BsuRI	GGCC	1 cut(s)	239
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	217
BtsI	GCAGTG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	166
Cac8I	GCNNGC	1 cut(s)	36
CaiI	CAGNNNCTG	1 cut(s)	272
CciNI	GCGGCCGC	1 cut(s)	237
Cfr13I	GGNCC	1 cut(s)	202
CviJI	RGCY	3 cut(s)	38, 239, 269
CviKI_1	RGCY	3 cut(s)	38, 239, 269
DpnI	GATC	2 cut(s)	17, 258
DpnII	GATC	2 cut(s)	15, 256
DriI	GACNNNNNGTC	1 cut(s)	178
EaeI	YGGCCR	1 cut(s)	237
EagI	CGGCCG	1 cut(s)	237
Eam1105I	GACNNNNNGTC	1 cut(s)	178
EclXI	CGGCCG	1 cut(s)	237
Eco47I	GGWCC	1 cut(s)	202
Eco52I	CGGCCG	1 cut(s)	237
EcoRI	GAATTC	1 cut(s)	306
FaiI	YATR	2 cut(s)	118, 296
FauI	CCCGC	1 cut(s)	151
FbaI	TGATCA	1 cut(s)	256
Fnu4HI	GCNGC	7 cut(s)	157, 234, 237, 240, 267, 270, 273
FokI	GGATG	1 cut(s)	224
Fsp4HI	GCNGC	7 cut(s)	157, 234, 237, 240, 267, 270, 273
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	7 cut(s)	157, 234, 237, 240, 267, 270, 273
HaeIII	GGCC	1 cut(s)	239
HapII	CCGG	1 cut(s)	320
HincII	GTYRAC	1 cut(s)	76
HindII	GTYRAC	1 cut(s)	76
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	3 cut(s)	38, 178, 309
Hpy166II	GTNNAC	2 cut(s)	46, 76
Hpy188III	TCNNGA	1 cut(s)	209
Hpy8I	GTNNAC	2 cut(s)	46, 76
HpyCH4III	ACNGT	3 cut(s)	43, 206, 332
HpyCH4V	TGCA	4 cut(s)	58, 81, 159, 275
HpyF10VI	GCNNNNNNNGC	2 cut(s)	239, 272
Ksp22I	TGATCA	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	15, 256
LpnPI	CCDG	3 cut(s)	194, 203, 333
Lsp1109I	GCAGC	4 cut(s)	143, 245, 259, 278
LweI	GCATC	2 cut(s)	67, 93
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	2 cut(s)	170, 180
MalI	GATC	2 cut(s)	17, 258
MbiI	CCGCTC	1 cut(s)	242
MboI	GATC	2 cut(s)	15, 256
MluCI	AATT	1 cut(s)	306
MnlI	CCTC	2 cut(s)	61, 84
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	2 cut(s)	236, 272
MspI	CCGG	1 cut(s)	320
MwoI	GCNNNNNNNGC	2 cut(s)	239, 272
NdeII	GATC	2 cut(s)	15, 256
NheI	GCTAGC	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	135
NmuCI	GTSAC	2 cut(s)	170, 180
NotI	GCGGCCGC	1 cut(s)	237
OliI	CACNNNNGTG	1 cut(s)	86
PkrI	GCNGC	7 cut(s)	158, 235, 238, 241, 268, 271, 274
PspN4I	GGNNCC	1 cut(s)	135
PspPI	GGNCC	1 cut(s)	202
PstI	CTGCAG	1 cut(s)	161
PstNI	CAGNNNCTG	1 cut(s)	272
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	7 cut(s)	157, 234, 237, 240, 267, 270, 273
Sau3AI	GATC	2 cut(s)	15, 256
Sau96I	GGNCC	1 cut(s)	202
SetI	ASST	2 cut(s)	51, 329
SfaNI	GCATC	2 cut(s)	67, 93
SfcI	CTRYAG	1 cut(s)	157
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	306
SsiI	CCGC	4 cut(s)	144, 236, 240, 270
SspMI	CTAG	1 cut(s)	35
TaaI	ACNGT	3 cut(s)	43, 206, 332
TasI	AATT	1 cut(s)	306
TauI	GCSGC	3 cut(s)	239, 242, 272
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	166
TseFI	GTSAC	2 cut(s)	170, 180
TseI	GCWGC	4 cut(s)	156, 233, 266, 272
Tsp45I	GTSAC	2 cut(s)	170, 180
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	166
VpaK11BI	GGWCC	1 cut(s)	202
XapI	RAATTY	1 cut(s)	306
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.