Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0008059

Physical Location & Seq

Genomic Coordinates Reverse (-)

27282755 .. 27283690

Gene Structure 936 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG171000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGAAGGGCATTGTGATCTCAATGTTTCTTGTGCTAGGCACGGTTCACCTAATGGTGCATCAAGGGGAGGCAGTTGAGTGCACCCAAGTGAACCGGTTGTTGGCTCCTTGCATTCCCTACTTGACTGGCAAGGCTACTGAACCCACAGAGGAGTGCTGCCGTGGGGTGAGTGACATCAAGACACTCACCCCGACCACCGAGGACAGGCAGGAGGCCTGTGGATGTGTTAAGACAGCAGCTGCTCACATCCCCAATGTTGATCCAGCTGCAGCTGCTGCTCTCCCAACCGAGTGTAAAGTAGACATTGGAATTCCGATCTCAAAGAACACCAACTGTCAGGATGTCAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

116

Amino Acids

12.31

Weight (kDa)

5.52

Isoelectric Point (pI)

35.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	18 - 101	2.1e-08	Probable lipid transfer
Tryp_alpha_amyl	PF00234	27 - 112	4.6e-14	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59330
fragaria_vesca	FvH4_7g10020
malus_domestica	MD02G1211600.v1.1 MD07G1105600.v1.1 MD09G1144900.v1.1 MD17G1131400.v1.1
prunus_persica	Prupe.2G129200_v2.0.a1 Prupe.3G183000_v2.0.a1
pyrus_communis	pycom02g17710 pycom07g09010 pycom07g09080 pycom09g06430 pycom17g12420
rosa_chinensis	RchiOBHm_Chr1g0347601
rosa_laevigata	RLG00000028734
rosa_multiflora	Rmu_sc0006589.1_g000010 Rmu_sc0010621.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307610
rosa_rugosa	Rorug01G0188200
rosa_samantha	Rh1AG205100 Rh1BG171000 Rh1CG190400 Rh1DG201200
rosa_wichuraiana	Rw0G018180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	300
AclWI	GGATC	1 cut(s)	254
AcsI	RAATTY	1 cut(s)	309
AfiI	CCNNNNNNNGG	2 cut(s)	100, 204
AgeI	ACCGGT	1 cut(s)	93
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AleI	CACNNNNGTG	1 cut(s)	86
AluBI	AGCT	3 cut(s)	239, 266, 272
AluI	AGCT	3 cut(s)	239, 266, 272
Alw21I	GWGCWC	1 cut(s)	83
Alw44I	GTGCAC	1 cut(s)	79
AlwI	GGATC	1 cut(s)	254
AlwNI	CAGNNNCTG	2 cut(s)	239, 275
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	79
ApeKI	GCWGC	7 cut(s)	156, 236, 239, 266, 269, 272, 275
ApoI	RAATTY	1 cut(s)	309
AsiGI	ACCGGT	1 cut(s)	93
AsuHPI	GGTGA	3 cut(s)	38, 178, 178
BaeGI	GKGCMC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
BceAI	ACGGC	1 cut(s)	144
BfaI	CTAG	1 cut(s)	35
BfmI	CTRYAG	1 cut(s)	267
BisI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
BlsI	GCNGC	7 cut(s)	158, 238, 241, 268, 271, 274, 277
BmiI	GGNNCC	1 cut(s)	105
BmsI	GCATC	1 cut(s)	67
BsaJI	CCNNGG	2 cut(s)	160, 198
BsaWI	WCCGGW	1 cut(s)	93
Bsc4I	CCNNNNNNNGG	2 cut(s)	100, 204
Bse118I	RCCGGY	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	130
BseDI	CCNNGG	2 cut(s)	160, 198
BseGI	GGATG	3 cut(s)	227, 246, 346
BseLI	CCNNNNNNNGG	2 cut(s)	100, 204
BseNI	ACTGG	1 cut(s)	130
BseRI	GAGGAG	1 cut(s)	164
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
BshFI	GGCC	1 cut(s)	215
BshTI	ACCGGT	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	94
BslI	CCNNNNNNNGG	2 cut(s)	100, 204
BsmI	GAATGC	1 cut(s)	111
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp143I	GATC	3 cut(s)	15, 259, 315
BspANI	GGCC	1 cut(s)	215
BspLI	GGNNCC	1 cut(s)	105
BspMAI	CTGCAG	1 cut(s)	271
BspPI	GGATC	1 cut(s)	254
BsrFI	RCCGGY	1 cut(s)	93
BsrI	ACTGG	1 cut(s)	130
BssAI	RCCGGY	1 cut(s)	93
BssECI	CCNNGG	2 cut(s)	160, 198
BssMI	GATC	3 cut(s)	15, 259, 315
Bst4CI	ACNGT	2 cut(s)	43, 335
BstAPI	GCANNNNNTGC	1 cut(s)	275
BstDSI	CCRYGG	1 cut(s)	160
BstF5I	GGATG	3 cut(s)	227, 246, 346
BstKTI	GATC	3 cut(s)	18, 262, 318
BstMBI	GATC	3 cut(s)	15, 259, 315
BstMWI	GCNNNNNNNGC	2 cut(s)	272, 275
BstSFI	CTRYAG	1 cut(s)	267
BstSLI	GKGCMC	1 cut(s)	83
BstV1I	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
BsuRI	GGCC	1 cut(s)	215
BtgI	CCRYGG	1 cut(s)	160
BtsCI	GGATG	3 cut(s)	227, 246, 346
CaiI	CAGNNNCTG	2 cut(s)	239, 275
Cfr10I	RCCGGY	1 cut(s)	93
CspAI	ACCGGT	1 cut(s)	93
CviJI	RGCY	6 cut(s)	104, 134, 215, 239, 266, 272
CviKI_1	RGCY	6 cut(s)	104, 134, 215, 239, 266, 272
DpnI	GATC	3 cut(s)	17, 261, 317
DpnII	GATC	3 cut(s)	15, 259, 315
Eco147I	AGGCCT	1 cut(s)	215
EcoRI	GAATTC	1 cut(s)	309
FblI	GTMKAC	1 cut(s)	300
Fnu4HI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
FokI	GGATG	2 cut(s)	233, 234
Fsp4HI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
FspBI	CTAG	1 cut(s)	35
GluI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
HaeIII	GGCC	1 cut(s)	215
HapII	CCGG	1 cut(s)	94
HpaII	CCGG	1 cut(s)	94
HphI	GGTGA	3 cut(s)	38, 178, 178
Hpy166II	GTNNAC	4 cut(s)	46, 81, 91, 301
Hpy188I	TCNGA	1 cut(s)	315
Hpy188III	TCNNGA	2 cut(s)	178, 338
Hpy8I	GTNNAC	4 cut(s)	46, 81, 91, 301
HpyCH4III	ACNGT	2 cut(s)	43, 335
HpyCH4V	TGCA	4 cut(s)	58, 81, 111, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	272, 275
Kzo9I	GATC	3 cut(s)	15, 259, 315
LmnI	GCTCC	1 cut(s)	109
LpnPI	CCDG	7 cut(s)	107, 111, 190, 194, 229, 276, 323
Lsp1109I	GCAGC	7 cut(s)	143, 226, 248, 253, 259, 262, 281
LweI	GCATC	1 cut(s)	67
MaeI	CTAG	1 cut(s)	35
MaeIII	GTNAC	1 cut(s)	170
MalI	GATC	3 cut(s)	17, 261, 317
MboI	GATC	3 cut(s)	15, 259, 315
MhlI	GDGCHC	1 cut(s)	83
MluCI	AATT	1 cut(s)	309
MnlI	CCTC	4 cut(s)	61, 142, 193, 205
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	1 cut(s)	86
MspA1I	CMGCKG	3 cut(s)	239, 266, 272
MspI	CCGG	1 cut(s)	94
Mva1269I	GAATGC	1 cut(s)	111
MwoI	GCNNNNNNNGC	2 cut(s)	272, 275
NdeII	GATC	3 cut(s)	15, 259, 315
NlaIV	GGNNCC	1 cut(s)	105
NmuCI	GTSAC	1 cut(s)	170
OliI	CACNNNNGTG	1 cut(s)	86
PceI	AGGCCT	1 cut(s)	215
PctI	GAATGC	1 cut(s)	111
PinAI	ACCGGT	1 cut(s)	93
PkrI	GCNGC	7 cut(s)	158, 238, 241, 268, 271, 274, 277
PspN4I	GGNNCC	1 cut(s)	105
PstI	CTGCAG	1 cut(s)	271
PstNI	CAGNNNCTG	2 cut(s)	239, 275
PvuII	CAGCTG	3 cut(s)	239, 266, 272
RseI	CAYNNNNRTG	1 cut(s)	86
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	7 cut(s)	157, 237, 240, 267, 270, 273, 276
Sau3AI	GATC	3 cut(s)	15, 259, 315
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	4 cut(s)	51, 241, 268, 274
SfaNI	GCATC	1 cut(s)	67
SfcI	CTRYAG	1 cut(s)	267
SmiMI	CAYNNNNRTG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	309
SseBI	AGGCCT	1 cut(s)	215
SspMI	CTAG	1 cut(s)	35
StuI	AGGCCT	1 cut(s)	215
TaaI	ACNGT	2 cut(s)	43, 335
TasI	AATT	1 cut(s)	309
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	7 cut(s)	156, 236, 239, 266, 269, 272, 275
Tsp45I	GTSAC	1 cut(s)	170
TspDTI	ATGAA	1 cut(s)	17
VneI	GTGCAC	1 cut(s)	79
XapI	RAATTY	1 cut(s)	309
XmiI	GTMKAC	1 cut(s)	300
XspI	CTAG	1 cut(s)	35

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.