Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr9

Orthogroup ID

OG0008059

Physical Location & Seq

Genomic Coordinates Forward (+)

4715593 .. 4715946

Gene Structure 354 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom09g06430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGAAGGTCGTTGTTGTAGCGGCAGTGGCAGTGGCAGTGGGGTTGGCCATGTTGGTCTTGGTTGAACCGGGGCATGCCACGGTCACTTGCCAACAAGCAGTGTCATCTCTGACTCCTTGCCTTCCATATCTCACCAGCGGCGCTGAAACCCCGCCTGCGGCATGTTGCAGTGGGGTTTCGGGTCTGAAACAGCTCACTCAAACCACCGAAGATAGGCGTACAGCCTGCCAATGCCTTAAGGACGCGGCAAGCCAGAACCAAGGCATTAGGGAAGGCGCTGCTGCTGGTCTCCCTGAGGCGTGTCAAGTTCAAATCAACGTTCCCATTTCTAGTAGCGTTGACTGCAACCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

11.87

Weight (kDa)

5.12

Isoelectric Point (pI)

40.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	21 - 106	2.7e-09	Probable lipid transfer
Tryp_alpha_amyl	PF00234	30 - 115	5.4e-13	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59330
fragaria_vesca	FvH4_7g10020
malus_domestica	MD02G1211600.v1.1 MD07G1105600.v1.1 MD09G1144900.v1.1 MD17G1131400.v1.1
prunus_persica	Prupe.2G129200_v2.0.a1 Prupe.3G183000_v2.0.a1
pyrus_communis	pycom02g17710 pycom07g09010 pycom07g09080 pycom09g06430 pycom17g12420
rosa_chinensis	RchiOBHm_Chr1g0347601
rosa_laevigata	RLG00000028734
rosa_multiflora	Rmu_sc0006589.1_g000010 Rmu_sc0010621.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307610
rosa_rugosa	Rorug01G0188200
rosa_samantha	Rh1AG205100 Rh1BG171000 Rh1CG190400 Rh1DG201200
rosa_wichuraiana	Rw0G018180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	245
AciI	CCGC	5 cut(s)	20, 138, 152, 158, 245
AclI	AACGTT	1 cut(s)	318
AcoI	YGGCCR	1 cut(s)	45
AfaI	GTAC	1 cut(s)	220
AfiI	CCNNNNNNNGG	2 cut(s)	157, 213
AflII	CTTAAG	1 cut(s)	236
AgsI	TTSAA	2 cut(s)	65, 311
AluBI	AGCT	1 cut(s)	193
AluI	AGCT	1 cut(s)	193
Alw26I	GTCTC	1 cut(s)	293
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	2 cut(s)	278, 281
AspLEI	GCGC	2 cut(s)	143, 278
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	124
AxyI	CCTNAGG	1 cut(s)	294
BalI	TGGCCA	1 cut(s)	47
BbvI	GCAGC	2 cut(s)	265, 268
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	330
BfoI	RGCGCY	2 cut(s)	144, 279
BfrI	CTTAAG	1 cut(s)	236
BisI	GCNGC	6 cut(s)	21, 139, 159, 246, 279, 282
BlsI	GCNGC	6 cut(s)	22, 140, 160, 247, 280, 283
Bme1390I	CCNGG	1 cut(s)	69
BmrFI	CCNGG	1 cut(s)	69
BpuMI	CCSGG	1 cut(s)	69
BsaI	GGTCTC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	68, 78, 259
Bsc4I	CCNNNNNNNGG	2 cut(s)	157, 213
Bse1I	ACTGG	1 cut(s)	349
Bse21I	CCTNAGG	1 cut(s)	294
BseDI	CCNNGG	3 cut(s)	68, 78, 259
BseLI	CCNNNNNNNGG	2 cut(s)	157, 213
BseMII	CTCAG	1 cut(s)	285
BseNI	ACTGG	1 cut(s)	349
BseXI	GCAGC	2 cut(s)	265, 268
Bsh1236I	CGCG	1 cut(s)	245
BshFI	GGCC	1 cut(s)	47
BsiSI	CCGG	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	157, 213
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	293
BspACI	CCGC	5 cut(s)	20, 138, 152, 158, 245
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	1 cut(s)	286
BspFNI	CGCG	1 cut(s)	245
BspTI	CTTAAG	1 cut(s)	236
BspTNI	GGTCTC	1 cut(s)	293
BsrI	ACTGG	1 cut(s)	349
BssECI	CCNNGG	3 cut(s)	68, 78, 259
BssT1I	CCWWGG	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	82
BstAFI	CTTAAG	1 cut(s)	236
BstC8I	GCNNGC	4 cut(s)	75, 156, 226, 250
BstDEI	CTNAG	1 cut(s)	294
BstDSI	CCRYGG	1 cut(s)	78
BstFNI	CGCG	1 cut(s)	245
BstH2I	RGCGCY	2 cut(s)	144, 279
BstHHI	GCGC	2 cut(s)	143, 278
BstMAI	GTCTC	1 cut(s)	293
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 342
BstNSI	RCATGY	2 cut(s)	77, 165
BstSCI	CCNGG	1 cut(s)	67
BstUI	CGCG	1 cut(s)	245
BstV1I	GCAGC	2 cut(s)	265, 268
Bsu36I	CCTNAGG	1 cut(s)	294
BsuRI	GGCC	1 cut(s)	47
BtgI	CCRYGG	1 cut(s)	78
BtsI	GCAGTG	5 cut(s)	30, 36, 42, 105, 175
BtsIMutI	CAGTG	5 cut(s)	30, 36, 42, 105, 175
Cac8I	GCNNGC	4 cut(s)	75, 156, 226, 250
CfoI	GCGC	2 cut(s)	143, 278
CseI	GACGC	1 cut(s)	251
Csp6I	GTAC	1 cut(s)	219
CviAII	CATG	3 cut(s)	49, 74, 162
CviJI	RGCY	4 cut(s)	47, 193, 224, 252
CviKI_1	RGCY	4 cut(s)	47, 193, 224, 252
CviQI	GTAC	1 cut(s)	219
DdeI	CTNAG	1 cut(s)	294
EaeI	YGGCCR	1 cut(s)	45
Eco130I	CCWWGG	1 cut(s)	259
Eco31I	GGTCTC	1 cut(s)	293
Eco81I	CCTNAGG	1 cut(s)	294
EcoT14I	CCWWGG	1 cut(s)	259
ErhI	CCWWGG	1 cut(s)	259
FaeI	CATG	3 cut(s)	52, 77, 165
FaiI	YATR	4 cut(s)	50, 75, 127, 163
FatI	CATG	3 cut(s)	48, 73, 161
FauI	CCCGC	1 cut(s)	159
Fnu4HI	GCNGC	6 cut(s)	21, 139, 159, 246, 279, 282
Fsp4HI	GCNGC	6 cut(s)	21, 139, 159, 246, 279, 282
FspBI	CTAG	1 cut(s)	330
GlaI	GCGC	2 cut(s)	142, 277
GluI	GCNGC	6 cut(s)	21, 139, 159, 246, 279, 282
HaeII	RGCGCY	2 cut(s)	144, 279
HaeIII	GGCC	1 cut(s)	47
HapII	CCGG	1 cut(s)	68
HgaI	GACGC	1 cut(s)	251
HhaI	GCGC	2 cut(s)	143, 278
Hin1II	CATG	3 cut(s)	52, 77, 165
Hin6I	GCGC	2 cut(s)	141, 276
HinP1I	GCGC	2 cut(s)	141, 276
HincII	GTYRAC	1 cut(s)	340
HindII	GTYRAC	1 cut(s)	340
HinfI	GANTC	1 cut(s)	112
HpaII	CCGG	1 cut(s)	68
HphI	GGTGA	1 cut(s)	124
Hpy166II	GTNNAC	1 cut(s)	340
Hpy188I	TCNGA	2 cut(s)	111, 186
Hpy8I	GTNNAC	1 cut(s)	340
HpyAV	CCTTC	2 cut(s)	131, 266
HpyCH4III	ACNGT	1 cut(s)	82
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	2 cut(s)	168, 345
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 342
HpyF3I	CTNAG	1 cut(s)	294
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	52, 77, 165
HspAI	GCGC	2 cut(s)	141, 276
LpnPI	CCDG	7 cut(s)	81, 148, 168, 238, 266, 270, 306
Lsp1109I	GCAGC	2 cut(s)	265, 268
MaeI	CTAG	1 cut(s)	330
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	1 cut(s)	82
MboII	GAAGA	1 cut(s)	221
MlsI	TGGCCA	1 cut(s)	47
MluNI	TGGCCA	1 cut(s)	47
MlyI	GAGTC	1 cut(s)	106
MnlI	CCTC	1 cut(s)	289
Mox20I	TGGCCA	1 cut(s)	47
MscI	TGGCCA	1 cut(s)	47
MseI	TTAA	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	47
MspA1I	CMGCKG	1 cut(s)	138
MspCI	CTTAAG	1 cut(s)	236
MspI	CCGG	1 cut(s)	68
MspR9I	CCNGG	1 cut(s)	69
MvnI	CGCG	1 cut(s)	245
MwoI	GCNNNNNNNGC	2 cut(s)	26, 342
NciI	CCSGG	1 cut(s)	69
NlaIII	CATG	3 cut(s)	52, 77, 165
NmuCI	GTSAC	1 cut(s)	82
NspI	RCATGY	2 cut(s)	77, 165
PaeI	GCATGC	1 cut(s)	77
PkrI	GCNGC	6 cut(s)	22, 140, 160, 247, 280, 283
PleI	GAGTC	1 cut(s)	106
PpsI	GAGTC	1 cut(s)	106
Psp1406I	AACGTT	1 cut(s)	318
RsaI	GTAC	1 cut(s)	220
RsaNI	GTAC	1 cut(s)	219
SaqAI	TTAA	1 cut(s)	237
SatI	GCNGC	6 cut(s)	21, 139, 159, 246, 279, 282
SchI	GAGTC	1 cut(s)	106
ScrFI	CCNGG	1 cut(s)	69
SetI	ASST	3 cut(s)	9, 195, 321
SmlI	CTYRAG	1 cut(s)	236
SmoI	CTYRAG	1 cut(s)	236
SphI	GCATGC	1 cut(s)	77
SsiI	CCGC	5 cut(s)	20, 138, 152, 158, 245
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	67
StyI	CCWWGG	1 cut(s)	259
TaaI	ACNGT	1 cut(s)	82
TaiI	ACGT	1 cut(s)	321
TauI	GCSGC	4 cut(s)	23, 141, 161, 248
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	5 cut(s)	30, 36, 42, 105, 175
TseFI	GTSAC	1 cut(s)	82
TseI	GCWGC	2 cut(s)	278, 281
Tsp45I	GTSAC	1 cut(s)	82
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	5 cut(s)	30, 36, 42, 105, 175
Vha464I	CTTAAG	1 cut(s)	236
XceI	RCATGY	2 cut(s)	77, 165
XcmI	CCANNNNNNNNNTGG	1 cut(s)	55
XspI	CTAG	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.