Rroxscaffold_4G00307610

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Forward (+)
29065640 .. 29065984
345 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_4G00307610.1

Sequence Viewer

Length: 345 bp
ATGAAGGGCATTGTGATCTCAATGTTTCTTGTGATAGGCACGGTTCACCTAATGGTGCGTCAAGGGGAGGCAGTTGAGTGCACCCAAGTGAACCGGTTGTTGGTTCCTTGCATTCCCCACTTGACTGGCAAGGCTACTGAACCCACAGAGGAGTGCTGCCGTGGGGTGAGTGACATCAAGACACTCACCCCGACCACCAAGGACAGGCAGGAGGCCTGTGGATGTGTTAAGACAGCAGCTGCTCACATCCCCAATGTTGATCCAGCTTCTGCTGCTGCTCTCCCAACCGAGTGTAAAGTAGACATTGGAATTCCGATCTCAAAGAACACCAACTGTCAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

114

Amino Acids

12.13

Weight (kDa)

6.28

Isoelectric Point (pI)

34.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 16 - 101 2.8e-08 Probable lipid transfer
Tryp_alpha_amyl PF00234 27 - 112 2.6e-12 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AclWI GGATC 1 cut(s) 254
AcsI RAATTY 1 cut(s) 309
AfiI CCNNNNNNNGG 2 cut(s) 100, 204
AgeI ACCGGT 1 cut(s) 93
AjuI GAANNNNNNNTTGG 2 cut(s) 83, 115
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 2 cut(s) 239, 266
AluI AGCT 2 cut(s) 239, 266
Alw21I GWGCWC 1 cut(s) 83
Alw44I GTGCAC 1 cut(s) 79
AlwI GGATC 1 cut(s) 254
AlwNI CAGNNNCTG 2 cut(s) 239, 269
AoxI GGCC 1 cut(s) 213
ApaLI GTGCAC 1 cut(s) 79
ApeKI GCWGC 5 cut(s) 156, 236, 239, 272, 275
ApoI RAATTY 1 cut(s) 309
AsiGI ACCGGT 1 cut(s) 93
AsuHPI GGTGA 3 cut(s) 38, 178, 178
BaeGI GKGCMC 1 cut(s) 83
Bbv12I GWGCWC 1 cut(s) 83
BbvI GCAGC 5 cut(s) 143, 226, 248, 259, 262
BceAI ACGGC 1 cut(s) 144
BisI GCNGC 5 cut(s) 157, 237, 240, 273, 276
BlsI GCNGC 5 cut(s) 158, 238, 241, 274, 277
BmiI GGNNCC 1 cut(s) 105
BsaJI CCNNGG 2 cut(s) 160, 198
BsaWI WCCGGW 1 cut(s) 93
Bsc4I CCNNNNNNNGG 2 cut(s) 100, 204
Bse118I RCCGGY 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 130
BseDI CCNNGG 2 cut(s) 160, 198
BseGI GGATG 2 cut(s) 227, 246
BseLI CCNNNNNNNGG 2 cut(s) 100, 204
BseNI ACTGG 1 cut(s) 130
BseRI GAGGAG 1 cut(s) 164
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 5 cut(s) 143, 226, 248, 259, 262
BshFI GGCC 1 cut(s) 215
BshTI ACCGGT 1 cut(s) 93
BsiHKAI GWGCWC 1 cut(s) 83
BsiSI CCGG 1 cut(s) 94
BslI CCNNNNNNNGG 2 cut(s) 100, 204
BsmI GAATGC 1 cut(s) 111
BsnI GGCC 1 cut(s) 215
Bsp1286I GDGCHC 1 cut(s) 83
Bsp143I GATC 3 cut(s) 15, 259, 315
BspANI GGCC 1 cut(s) 215
BspLI GGNNCC 1 cut(s) 105
BspPI GGATC 1 cut(s) 254
BsrFI RCCGGY 1 cut(s) 93
BsrI ACTGG 1 cut(s) 130
BssAI RCCGGY 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 160, 198
BssMI GATC 3 cut(s) 15, 259, 315
BssT1I CCWWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 43, 335
BstDSI CCRYGG 1 cut(s) 160
BstF5I GGATG 2 cut(s) 227, 246
BstKTI GATC 3 cut(s) 18, 262, 318
BstMBI GATC 3 cut(s) 15, 259, 315
BstMWI GCNNNNNNNGC 1 cut(s) 272
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 5 cut(s) 143, 226, 248, 259, 262
BstXI CCANNNNNNTGG 1 cut(s) 125
BsuRI GGCC 1 cut(s) 215
BtgI CCRYGG 1 cut(s) 160
BtsCI GGATG 2 cut(s) 227, 246
CaiI CAGNNNCTG 2 cut(s) 239, 269
Cfr10I RCCGGY 1 cut(s) 93
CseI GACGC 1 cut(s) 47
CspAI ACCGGT 1 cut(s) 93
CviJI RGCY 4 cut(s) 134, 215, 239, 266
CviKI_1 RGCY 4 cut(s) 134, 215, 239, 266
DpnI GATC 3 cut(s) 17, 261, 317
DpnII GATC 3 cut(s) 15, 259, 315
Eco130I CCWWGG 1 cut(s) 198
Eco147I AGGCCT 1 cut(s) 215
EcoRI GAATTC 1 cut(s) 309
EcoT14I CCWWGG 1 cut(s) 198
ErhI CCWWGG 1 cut(s) 198
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 5 cut(s) 157, 237, 240, 273, 276
FokI GGATG 2 cut(s) 233, 234
Fsp4HI GCNGC 5 cut(s) 157, 237, 240, 273, 276
GluI GCNGC 5 cut(s) 157, 237, 240, 273, 276
HaeIII GGCC 1 cut(s) 215
HapII CCGG 1 cut(s) 94
HgaI GACGC 1 cut(s) 47
HpaII CCGG 1 cut(s) 94
HphI GGTGA 3 cut(s) 38, 178, 178
Hpy166II GTNNAC 4 cut(s) 46, 81, 91, 301
Hpy188I TCNGA 1 cut(s) 315
Hpy188III TCNNGA 2 cut(s) 178, 338
Hpy8I GTNNAC 4 cut(s) 46, 81, 91, 301
HpyCH4III ACNGT 2 cut(s) 43, 335
HpyCH4V TGCA 2 cut(s) 81, 111
HpyF10VI GCNNNNNNNGC 1 cut(s) 272
Kzo9I GATC 3 cut(s) 15, 259, 315
LpnPI CCDG 7 cut(s) 107, 111, 190, 194, 229, 276, 323
Lsp1109I GCAGC 5 cut(s) 143, 226, 248, 259, 262
MaeIII GTNAC 1 cut(s) 170
MalI GATC 3 cut(s) 17, 261, 317
MboI GATC 3 cut(s) 15, 259, 315
MhlI GDGCHC 1 cut(s) 83
MluCI AATT 1 cut(s) 309
MnlI CCTC 3 cut(s) 61, 142, 205
MseI TTAA 1 cut(s) 228
MslI CAYNNNNRTG 1 cut(s) 86
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 94
Mva1269I GAATGC 1 cut(s) 111
MwoI GCNNNNNNNGC 1 cut(s) 272
NdeII GATC 3 cut(s) 15, 259, 315
NlaIV GGNNCC 1 cut(s) 105
NmuCI GTSAC 1 cut(s) 170
OliI CACNNNNGTG 1 cut(s) 86
PceI AGGCCT 1 cut(s) 215
PctI GAATGC 1 cut(s) 111
PinAI ACCGGT 1 cut(s) 93
PkrI GCNGC 5 cut(s) 158, 238, 241, 274, 277
PspN4I GGNNCC 1 cut(s) 105
PstNI CAGNNNCTG 2 cut(s) 239, 269
PvuII CAGCTG 1 cut(s) 239
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 1 cut(s) 228
SatI GCNGC 5 cut(s) 157, 237, 240, 273, 276
Sau3AI GATC 3 cut(s) 15, 259, 315
SduI GDGCHC 1 cut(s) 83
SetI ASST 3 cut(s) 51, 241, 268
SmiMI CAYNNNNRTG 1 cut(s) 86
Sse9I AATT 1 cut(s) 309
SseBI AGGCCT 1 cut(s) 215
StuI AGGCCT 1 cut(s) 215
StyI CCWWGG 1 cut(s) 198
TaaI ACNGT 2 cut(s) 43, 335
TasI AATT 1 cut(s) 309
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TseFI GTSAC 1 cut(s) 170
TseI GCWGC 5 cut(s) 156, 236, 239, 272, 275
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 1 cut(s) 17
VneI GTGCAC 1 cut(s) 79
XapI RAATTY 1 cut(s) 309
XmiI GTMKAC 1 cut(s) 300
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.