Rorug01G0188200

Plant non-specific lipid-transfer proteins transfer phospholipids as well as galactolipids across membranes. May play a role in wax or cutin deposition in the cell walls of expanding epidermal cells and certain secretory tissues

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0008059
Physical Location & Seq
Forward (+)
26004391 .. 26008738
4348 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0188200.1

Sequence Viewer

Length: 936 bp
ATGTTGATGAACTACGATATTGATAATCATGTCGGATGCCATAACCTAGGCCAGGTGATGGGCTACGATTCAGTTAGAGCTCTAGTCTGTCAGTCACCGTATTTGTATAAATACGCTTTCGGGGTTTTGAGAAGAAAGATGATTGTCCACTGCGTGATTGATGAAATTGAAATTGAGTATGCTGGCAAGCTTAAGTGCTTTGTGCTCAACGCATATGTTGATTTGCAGATTGCCGAGGACTATGATATTAAGGCTGTGCCTGTGGTTTTGCTGTTTAAGAATGGGAAGAATTGTGACACTGCGTTTGGTACCATGCCAAAGGAGTTCTATGTTGCTGCCATTGAGAGGGTCCTGACGCCATTTTATTCCATATCTGCAGTCTGCACCGTGGTAGCATCAGAAAAAAAGTTGCCTATATCAAAAGAATTTGATGTTTTTAGGATCTCGCAACACATTTATGAGTCCCTCACTTCAAAAGCTTGCCAAAGCACAAACCTAGATCTGCTTCTATCAAAGTTGCAGGCAACTTTGAGGGATAAAAGGTTCTCCTTTGTTCTTGATGACATCTGGAACAAGAATTATAACCAGTTGGAATTCTTAATGCATCCCCTTGAGTCTGGAGCACATGGAAGCAAGATCATTGTCACAACACGTGATGAAAATGTTGCACATATGATGGGTAGCCTTGAAGCTCACCATCTCATGCCAATGTCTGAGGAAGATAGCTGGTTGTTATTCAAAAAACATGCCTTCAAAAATGCAGGTGTTGGTACACACTCACATCTTGAAAAAAGCGGTAGACAAATTGTTCAAAAGTGCAATGGTCTTCCTTTGGCTATTAAGTGCCTTGGGGATCTCTTATGTTCTAAATTGTTAGTGGAGGAATGGGAAAGTATATTGAACAGTGGCATGTGGGAGTTCTCACCGGATGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LTP_2 Tryp_alpha_amyl

Protein Analysis

311

Amino Acids

35.31

Weight (kDa)

6.07

Isoelectric Point (pI)

48.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NB-ARC PF00931 138 - 253 3.7e-21 NB-ARC domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 582
AarI CACCTGC 1 cut(s) 752
Acc36I ACCTGC 1 cut(s) 752
Acc65I GGTACC 1 cut(s) 308
AccB1I GGYRCC 1 cut(s) 308
AccB7I CCANNNNNTGG 1 cut(s) 58
AccI GTMKAC 1 cut(s) 799
AciI CCGC 1 cut(s) 795
AclWI GGATC 2 cut(s) 449, 861
AcsI RAATTY 2 cut(s) 425, 593
AcvI CACGTG 1 cut(s) 653
AcyI GRCGYC 1 cut(s) 356
AdeI CACNNNGTG 1 cut(s) 154
AfaI GTAC 2 cut(s) 310, 772
AfiI CCNNNNNNNGG 3 cut(s) 52, 58, 345
AflII CTTAAG 1 cut(s) 191
AflIII ACRYGT 1 cut(s) 650
AgsI TTSAA 8 cut(s) 170, 474, 689, 739, 754, 788, 812, 901
AjnI CCWGG 1 cut(s) 51
AloI GAACNNNNNNTCC 2 cut(s) 527, 559
AluBI AGCT 5 cut(s) 80, 190, 479, 692, 726
AluI AGCT 5 cut(s) 80, 190, 479, 692, 726
Alw21I GWGCWC 3 cut(s) 82, 207, 625
AlwI GGATC 2 cut(s) 449, 861
AoxI GGCC 1 cut(s) 49
ApeKI GCWGC 1 cut(s) 335
ApoI RAATTY 2 cut(s) 425, 593
ArsI GACNNNNNNTTYG 2 cut(s) 287, 319
Asp718I GGTACC 1 cut(s) 308
AspA2I CCTAGG 1 cut(s) 46
AspS9I GGNCC 1 cut(s) 349
AsuHPI GGTGA 4 cut(s) 67, 87, 686, 915
AvaII GGWCC 1 cut(s) 349
AvrII CCTAGG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 308
BanII GRGCYC 1 cut(s) 82
BbrPI CACGTG 1 cut(s) 653
BbsI GAAGAC 1 cut(s) 818
Bbv12I GWGCWC 3 cut(s) 82, 207, 625
BbvI GCAGC 1 cut(s) 322
BccI CCATC 3 cut(s) 52, 670, 705
BciT130I CCWGG 1 cut(s) 53
BfaI CTAG 3 cut(s) 47, 83, 497
BfmI CTRYAG 1 cut(s) 375
BfrI CTTAAG 1 cut(s) 191
BfuAI ACCTGC 1 cut(s) 752
BglII AGATCT 1 cut(s) 499
BisI GCNGC 1 cut(s) 336
BlnI CCTAGG 1 cut(s) 46
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 1 cut(s) 53
Bme18I GGWCC 1 cut(s) 349
BmgT120I GGNCC 1 cut(s) 349
BmiI GGNNCC 2 cut(s) 310, 350
BmrFI CCNGG 1 cut(s) 53
BmsI GCATC 3 cut(s) 26, 404, 613
BpiI GAAGAC 1 cut(s) 818
BpmI CTGGAG 1 cut(s) 639
BpuEI CTTGAG 1 cut(s) 632
BsaAI YACGTR 1 cut(s) 653
BsaHI GRCGYC 1 cut(s) 356
BsaJI CCNNGG 4 cut(s) 46, 234, 387, 847
BsaWI WCCGGW 1 cut(s) 925
Bsc4I CCNNNNNNNGG 3 cut(s) 52, 58, 345
Bse1I ACTGG 1 cut(s) 586
Bse3DI GCAATG 1 cut(s) 826
BseBI CCWGG 1 cut(s) 53
BseDI CCNNGG 4 cut(s) 46, 234, 387, 847
BseGI GGATG 3 cut(s) 41, 604, 934
BseLI CCNNNNNNNGG 3 cut(s) 52, 58, 345
BseMI GCAATG 1 cut(s) 826
BseMII CTCAG 1 cut(s) 705
BseNI ACTGG 1 cut(s) 586
BseXI GCAGC 1 cut(s) 322
BsgI GTGCAG 1 cut(s) 367
BshFI GGCC 1 cut(s) 51
BshNI GGYRCC 1 cut(s) 308
BsiHKAI GWGCWC 3 cut(s) 82, 207, 625
BsiSI CCGG 1 cut(s) 926
BslFI GGGAC 1 cut(s) 448
BslI CCNNNNNNNGG 3 cut(s) 52, 58, 345
BsmFI GGGAC 1 cut(s) 448
BsnI GGCC 1 cut(s) 51
Bsp1286I GDGCHC 3 cut(s) 82, 207, 625
Bsp143I GATC 4 cut(s) 441, 499, 636, 853
BspACI CCGC 1 cut(s) 795
BspANI GGCC 1 cut(s) 51
BspCNI CTCAG 1 cut(s) 706
BspLI GGNNCC 2 cut(s) 310, 350
BspMAI CTGCAG 1 cut(s) 379
BspMI ACCTGC 1 cut(s) 752
BspPI GGATC 2 cut(s) 449, 861
BspT107I GGYRCC 1 cut(s) 308
BspTI CTTAAG 1 cut(s) 191
BsrDI GCAATG 1 cut(s) 826
BsrI ACTGG 1 cut(s) 586
BssECI CCNNGG 4 cut(s) 46, 234, 387, 847
BssMI GATC 4 cut(s) 441, 499, 636, 853
BssNI GRCGYC 1 cut(s) 356
BssT1I CCWWGG 2 cut(s) 46, 847
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 3 cut(s) 99, 388, 905
BstACI GRCGYC 1 cut(s) 356
BstAFI CTTAAG 1 cut(s) 191
BstBAI YACGTR 1 cut(s) 653
BstC8I GCNNGC 4 cut(s) 184, 188, 481, 522
BstDEI CTNAG 1 cut(s) 714
BstDSI CCRYGG 1 cut(s) 387
BstENI CCTNNNNNAGG 1 cut(s) 50
BstF5I GGATG 3 cut(s) 41, 604, 934
BstKTI GATC 4 cut(s) 444, 502, 639, 856
BstMBI GATC 4 cut(s) 441, 499, 636, 853
BstNI CCWGG 1 cut(s) 53
BstNSI RCATGY 2 cut(s) 749, 913
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 322
BstV2I GAAGAC 1 cut(s) 818
BstX2I RGATCY 3 cut(s) 441, 499, 853
BstYI RGATCY 3 cut(s) 441, 499, 853
BsuRI GGCC 1 cut(s) 51
BtgI CCRYGG 1 cut(s) 387
BtsCI GGATG 3 cut(s) 41, 604, 934
BtsI GCAGTG 2 cut(s) 148, 297
BtsIMutI CAGTG 3 cut(s) 148, 297, 910
BveI ACCTGC 1 cut(s) 752
Cac8I GCNNGC 4 cut(s) 184, 188, 481, 522
Cfr13I GGNCC 1 cut(s) 349
CseI GACGC 1 cut(s) 364
Csp6I GTAC 2 cut(s) 309, 771
CviAII CATG 6 cut(s) 29, 313, 626, 703, 746, 910
CviQI GTAC 2 cut(s) 309, 771
DdeI CTNAG 1 cut(s) 714
DpnI GATC 4 cut(s) 443, 501, 638, 855
DpnII GATC 4 cut(s) 441, 499, 636, 853
DraIII CACNNNGTG 1 cut(s) 154
Ecl136II GAGCTC 1 cut(s) 80
Eco130I CCWWGG 2 cut(s) 46, 847
Eco24I GRGCYC 1 cut(s) 82
Eco47I GGWCC 1 cut(s) 349
Eco53kI GAGCTC 1 cut(s) 80
Eco72I CACGTG 1 cut(s) 653
EcoICRI GAGCTC 1 cut(s) 80
EcoNI CCTNNNNNAGG 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 349
EcoRI GAATTC 1 cut(s) 593
EcoRII CCWGG 1 cut(s) 51
EcoT14I CCWWGG 2 cut(s) 46, 847
EcoT22I ATGCAT 1 cut(s) 606
EcoT38I GRGCYC 1 cut(s) 82
ErhI CCWWGG 2 cut(s) 46, 847
FaeI CATG 6 cut(s) 32, 316, 629, 706, 749, 913
FaqI GGGAC 1 cut(s) 448
FatI CATG 6 cut(s) 28, 312, 625, 702, 745, 909
FauNDI CATATG 2 cut(s) 214, 672
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 2 cut(s) 48, 591
FriOI GRGCYC 1 cut(s) 82
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 3 cut(s) 47, 83, 497
GluI GCNGC 1 cut(s) 336
GsuI CTGGAG 1 cut(s) 639
HaeIII GGCC 1 cut(s) 51
HapII CCGG 1 cut(s) 926
HgaI GACGC 1 cut(s) 364
Hin1I GRCGYC 1 cut(s) 356
Hin1II CATG 6 cut(s) 32, 316, 629, 706, 749, 913
HindIII AAGCTT 2 cut(s) 188, 477
HinfI GANTC 3 cut(s) 68, 461, 614
HpaII CCGG 1 cut(s) 926
HphI GGTGA 4 cut(s) 67, 87, 686, 915
Hpy166II GTNNAC 3 cut(s) 148, 773, 800
Hpy188I TCNGA 3 cut(s) 35, 400, 715
Hpy188III TCNNGA 5 cut(s) 352, 557, 568, 618, 785
Hpy8I GTNNAC 3 cut(s) 148, 773, 800
HpyAV CCTTC 1 cut(s) 760
HpyCH4III ACNGT 3 cut(s) 99, 388, 905
HpyCH4IV ACGT 1 cut(s) 652
HpyCH4V TGCA 8 cut(s) 226, 377, 384, 520, 604, 668, 761, 819
HpyF3I CTNAG 1 cut(s) 714
HpySE526I ACGT 1 cut(s) 652
Hsp92I GRCGYC 1 cut(s) 356
Hsp92II CATG 6 cut(s) 32, 316, 629, 706, 749, 913
KpnI GGTACC 1 cut(s) 312
Kzo9I GATC 4 cut(s) 441, 499, 636, 853
LmnI GCTCC 1 cut(s) 620
Lsp1109I GCAGC 1 cut(s) 322
LweI GCATC 3 cut(s) 26, 404, 613
MaeI CTAG 3 cut(s) 47, 83, 497
MaeII ACGT 1 cut(s) 652
MaeIII GTNAC 3 cut(s) 93, 293, 643
MalI GATC 4 cut(s) 443, 501, 638, 855
MboI GATC 4 cut(s) 441, 499, 636, 853
MboII GAAGA 4 cut(s) 144, 298, 731, 818
MflI RGATCY 3 cut(s) 441, 499, 853
MhlI GDGCHC 3 cut(s) 82, 207, 625
MluCI AATT 8 cut(s) 165, 171, 289, 425, 577, 593, 804, 869
MlyI GAGTC 2 cut(s) 470, 623
MmeI TCCRAC 2 cut(s) 13, 570
MnlI CCTC 6 cut(s) 229, 339, 476, 525, 709, 874
Mph1103I ATGCAT 1 cut(s) 606
MseI TTAA 5 cut(s) 192, 249, 276, 599, 840
MslI CAYNNNNRTG 2 cut(s) 456, 707
MspCI CTTAAG 1 cut(s) 191
MspI CCGG 1 cut(s) 926
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
NdeI CATATG 2 cut(s) 214, 672
NdeII GATC 4 cut(s) 441, 499, 636, 853
NlaIII CATG 6 cut(s) 32, 316, 629, 706, 749, 913
NlaIV GGNNCC 2 cut(s) 310, 350
NmeAIII GCCGAG 1 cut(s) 259
NmuCI GTSAC 3 cut(s) 93, 293, 643
NsiI ATGCAT 1 cut(s) 606
NspI RCATGY 2 cut(s) 749, 913
PaqCI CACCTGC 1 cut(s) 752
PfeI GAWTC 1 cut(s) 68
PflMI CCANNNNNTGG 1 cut(s) 58
PkrI GCNGC 1 cut(s) 337
PleI GAGTC 2 cut(s) 469, 622
PmaCI CACGTG 1 cut(s) 653
PmlI CACGTG 1 cut(s) 653
PpsI GAGTC 2 cut(s) 469, 622
Ppu21I YACGTR 1 cut(s) 653
PpuMI RGGWCCY 1 cut(s) 349
PsiI TTATAA 1 cut(s) 582
Psp124BI GAGCTC 1 cut(s) 82
Psp5II RGGWCCY 1 cut(s) 349
Psp6I CCWGG 1 cut(s) 51
PspCI CACGTG 1 cut(s) 653
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 2 cut(s) 310, 350
PspPI GGNCC 1 cut(s) 349
PspPPI RGGWCCY 1 cut(s) 349
PstI CTGCAG 1 cut(s) 379
PsuI RGATCY 3 cut(s) 441, 499, 853
RsaI GTAC 2 cut(s) 310, 772
RsaNI GTAC 2 cut(s) 309, 771
RseI CAYNNNNRTG 2 cut(s) 456, 707
SacI GAGCTC 1 cut(s) 82
SaqAI TTAA 5 cut(s) 192, 249, 276, 599, 840
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 4 cut(s) 441, 499, 636, 853
Sau96I GGNCC 1 cut(s) 349
SchI GAGTC 2 cut(s) 470, 623
ScrFI CCNGG 1 cut(s) 53
SduI GDGCHC 3 cut(s) 82, 207, 625
SfaNI GCATC 3 cut(s) 26, 404, 613
SfcI CTRYAG 1 cut(s) 375
SinI GGWCC 1 cut(s) 349
SmiMI CAYNNNNRTG 2 cut(s) 456, 707
SmlI CTYRAG 2 cut(s) 191, 611
SmoI CTYRAG 2 cut(s) 191, 611
Sse9I AATT 8 cut(s) 165, 171, 289, 425, 577, 593, 804, 869
SsiI CCGC 1 cut(s) 795
SspMI CTAG 3 cut(s) 47, 83, 497
SstI GAGCTC 1 cut(s) 82
StyD4I CCNGG 1 cut(s) 51
StyI CCWWGG 2 cut(s) 46, 847
TaaI ACNGT 3 cut(s) 99, 388, 905
TaiI ACGT 1 cut(s) 655
TasI AATT 8 cut(s) 165, 171, 289, 425, 577, 593, 804, 869
TfiI GAWTC 1 cut(s) 68
Tru1I TTAA 5 cut(s) 192, 249, 276, 599, 840
Tru9I TTAA 5 cut(s) 192, 249, 276, 599, 840
TscAI CASTG 3 cut(s) 155, 304, 910
TseFI GTSAC 3 cut(s) 93, 293, 643
TseI GCWGC 1 cut(s) 335
Tsp45I GTSAC 3 cut(s) 93, 293, 643
TspDTI ATGAA 3 cut(s) 23, 177, 672
TspRI CASTG 3 cut(s) 155, 304, 910
Van91I CCANNNNNTGG 1 cut(s) 58
Vha464I CTTAAG 1 cut(s) 191
VpaK11BI GGWCC 1 cut(s) 349
XagI CCTNNNNNAGG 1 cut(s) 50
XapI RAATTY 2 cut(s) 425, 593
XceI RCATGY 2 cut(s) 749, 913
XmaJI CCTAGG 1 cut(s) 46
XmiI GTMKAC 1 cut(s) 799
XspI CTAG 3 cut(s) 47, 83, 497
Zsp2I ATGCAT 1 cut(s) 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.