Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0008059

Physical Location & Seq

Genomic Coordinates Reverse (-)

11922044 .. 11922582

Gene Structure 539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1105600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 354 bp

ATGATGAAGGGCATTGTGATCCCAAAGTTGGTTATACTAGCCATGGCTCACCTAATGCTGCAGCAAGGAGAGGCCGTCGTCTCTTGTGGCCAGGTGGACTCGAACTTAGCGCCTTGCGTTTCCTACCTGACCAAACGGGGTAATCTTGACCCAGCTTGCTGCACAGGGGTGCAGAACATCAAGAACCTCGCCCAAACCACAGCTGATAAGCAGGCCGCTTGTGAATGTTGTAAGGCAGCGGCAAACCGCTTCCCCAGTGTTGACGAAGTTACAGCTTCTACTCTCCCAGGCAAGTGTGGGATTGTAATGAATATCCCCATCTCAAAGACCACCAACTGCCAGAGCATCAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2 Tryp_alpha_amyl

Protein Analysis

118

Amino Acids

12.26

Weight (kDa)

8.4

Isoelectric Point (pI)

40.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tryp_alpha_amyl	PF00234	29 - 113	5.3e-11	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G59330
fragaria_vesca	FvH4_7g10020
malus_domestica	MD02G1211600.v1.1 MD07G1105600.v1.1 MD09G1144900.v1.1 MD17G1131400.v1.1
prunus_persica	Prupe.2G129200_v2.0.a1 Prupe.3G183000_v2.0.a1
pyrus_communis	pycom02g17710 pycom07g09010 pycom07g09080 pycom09g06430 pycom17g12420
rosa_chinensis	RchiOBHm_Chr1g0347601
rosa_laevigata	RLG00000028734
rosa_multiflora	Rmu_sc0006589.1_g000010 Rmu_sc0010621.1_g000005
rosa_roxburghii	Rroxscaffold_4G00307610
rosa_rugosa	Rorug01G0188200
rosa_samantha	Rh1AG205100 Rh1BG171000 Rh1CG190400 Rh1DG201200
rosa_wichuraiana	Rw0G018180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	216, 239, 247
AclWI	GGATC	1 cut(s)	13
AcoI	YGGCCR	1 cut(s)	88
AfiI	CCNNNNNNNGG	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	90, 286
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	155, 203, 275, 351
AluI	AGCT	4 cut(s)	155, 203, 275, 351
Alw26I	GTCTC	1 cut(s)	85
AlwI	GGATC	1 cut(s)	13
AoxI	GGCC	3 cut(s)	72, 88, 213
ApeKI	GCWGC	4 cut(s)	58, 61, 159, 236
AspLEI	GCGC	1 cut(s)	112
AsuHPI	GGTGA	1 cut(s)	41
BalI	TGGCCA	1 cut(s)	90
BbvI	GCAGC	4 cut(s)	45, 73, 146, 248
BccI	CCATC	1 cut(s)	326
BceAI	ACGGC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	92, 288
BcoDI	GTCTC	1 cut(s)	85
BfaI	CTAG	1 cut(s)	38
BfmI	CTRYAG	1 cut(s)	59
BfoI	RGCGCY	1 cut(s)	113
BisI	GCNGC	6 cut(s)	59, 62, 160, 216, 237, 240
BlsI	GCNGC	6 cut(s)	60, 63, 161, 217, 238, 241
Bme1390I	CCNGG	2 cut(s)	92, 288
BmrFI	CCNGG	2 cut(s)	92, 288
BmrI	ACTGGG	1 cut(s)	249
BmuI	ACTGGG	1 cut(s)	249
BsaJI	CCNNGG	2 cut(s)	42, 286
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	1 cut(s)	28
Bse1I	ACTGG	1 cut(s)	255
BseBI	CCWGG	2 cut(s)	92, 288
BseDI	CCNNGG	2 cut(s)	42, 286
BseLI	CCNNNNNNNGG	1 cut(s)	28
BseNI	ACTGG	1 cut(s)	255
BseXI	GCAGC	4 cut(s)	45, 73, 146, 248
BseYI	CCCAGC	1 cut(s)	151
BsgI	GTGCAG	2 cut(s)	145, 191
BshFI	GGCC	3 cut(s)	74, 90, 215
BslI	CCNNNNNNNGG	1 cut(s)	28
BsmAI	GTCTC	1 cut(s)	85
BsmBI	CGTCTC	1 cut(s)	85
BsnI	GGCC	3 cut(s)	74, 90, 215
Bsp143I	GATC	1 cut(s)	18
Bsp19I	CCATGG	1 cut(s)	42
BspACI	CCGC	3 cut(s)	216, 239, 247
BspANI	GGCC	3 cut(s)	74, 90, 215
BspMAI	CTGCAG	1 cut(s)	63
BspPI	GGATC	1 cut(s)	13
BsrI	ACTGG	1 cut(s)	255
BssECI	CCNNGG	2 cut(s)	42, 286
BssMI	GATC	1 cut(s)	18
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	2 cut(s)	92, 288
BstC8I	GCNNGC	2 cut(s)	157, 213
BstDEI	CTNAG	1 cut(s)	106
BstDSI	CCRYGG	1 cut(s)	42
BstH2I	RGCGCY	1 cut(s)	113
BstHHI	GCGC	1 cut(s)	112
BstKTI	GATC	1 cut(s)	21
BstMAI	GTCTC	1 cut(s)	85
BstMBI	GATC	1 cut(s)	18
BstNI	CCWGG	2 cut(s)	92, 288
BstSCI	CCNGG	2 cut(s)	90, 286
BstSFI	CTRYAG	1 cut(s)	59
BstV1I	GCAGC	4 cut(s)	45, 73, 146, 248
BsuRI	GGCC	3 cut(s)	74, 90, 215
BtgI	CCRYGG	1 cut(s)	42
BtsIMutI	CAGTG	1 cut(s)	262
Cac8I	GCNNGC	2 cut(s)	157, 213
CfoI	GCGC	1 cut(s)	112
CviAII	CATG	1 cut(s)	43
CviJI	RGCY	9 cut(s)	41, 47, 74, 90, 155, 203, 215, 275, 351
CviKI_1	RGCY	9 cut(s)	41, 47, 74, 90, 155, 203, 215, 275, 351
DdeI	CTNAG	1 cut(s)	106
DpnI	GATC	1 cut(s)	20
DpnII	GATC	1 cut(s)	18
EaeI	YGGCCR	1 cut(s)	88
Eco130I	CCWWGG	1 cut(s)	42
EcoRII	CCWGG	2 cut(s)	90, 286
EcoT14I	CCWWGG	1 cut(s)	42
ErhI	CCWWGG	1 cut(s)	42
Esp3I	CGTCTC	1 cut(s)	85
FaeI	CATG	1 cut(s)	46
FaiI	YATR	2 cut(s)	35, 44
FatI	CATG	1 cut(s)	42
Fnu4HI	GCNGC	6 cut(s)	59, 62, 160, 216, 237, 240
Fsp4HI	GCNGC	6 cut(s)	59, 62, 160, 216, 237, 240
FspBI	CTAG	1 cut(s)	38
GlaI	GCGC	1 cut(s)	111
GluI	GCNGC	6 cut(s)	59, 62, 160, 216, 237, 240
GsaI	CCCAGC	1 cut(s)	155
HaeII	RGCGCY	1 cut(s)	113
HaeIII	GGCC	3 cut(s)	74, 90, 215
HhaI	GCGC	1 cut(s)	112
Hin1II	CATG	1 cut(s)	46
Hin6I	GCGC	1 cut(s)	110
HinP1I	GCGC	1 cut(s)	110
HincII	GTYRAC	1 cut(s)	262
HindII	GTYRAC	1 cut(s)	262
HinfI	GANTC	1 cut(s)	98
HphI	GGTGA	1 cut(s)	41
Hpy166II	GTNNAC	2 cut(s)	97, 262
Hpy188III	TCNNGA	2 cut(s)	146, 181
Hpy8I	GTNNAC	2 cut(s)	97, 262
Hpy99I	CGWCG	1 cut(s)	80
HpyCH4V	TGCA	3 cut(s)	61, 162, 172
HpyF3I	CTNAG	1 cut(s)	106
Hsp92II	CATG	1 cut(s)	46
HspAI	GCGC	1 cut(s)	110
Kzo9I	GATC	1 cut(s)	18
LpnPI	CCDG	9 cut(s)	77, 104, 140, 150, 165, 197, 268, 273, 300
Lsp1109I	GCAGC	4 cut(s)	45, 73, 146, 248
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	268
MalI	GATC	1 cut(s)	20
MboI	GATC	1 cut(s)	18
MlsI	TGGCCA	1 cut(s)	90
MluNI	TGGCCA	1 cut(s)	90
MlyI	GAGTC	1 cut(s)	92
MnlI	CCTC	2 cut(s)	64, 197
Mox20I	TGGCCA	1 cut(s)	90
MscI	TGGCCA	1 cut(s)	90
MslI	CAYNNNNRTG	1 cut(s)	167
Msp20I	TGGCCA	1 cut(s)	90
MspA1I	CMGCKG	2 cut(s)	203, 239
MspR9I	CCNGG	2 cut(s)	92, 288
MvaI	CCWGG	2 cut(s)	92, 288
NcoI	CCATGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	18
NlaIII	CATG	1 cut(s)	46
OliI	CACNNNNGTG	1 cut(s)	167
PkrI	GCNGC	6 cut(s)	60, 63, 161, 217, 238, 241
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp6I	CCWGG	2 cut(s)	90, 286
PspFI	CCCAGC	1 cut(s)	151
PspGI	CCWGG	2 cut(s)	90, 286
PstI	CTGCAG	1 cut(s)	63
PvuII	CAGCTG	1 cut(s)	203
RseI	CAYNNNNRTG	1 cut(s)	167
SatI	GCNGC	6 cut(s)	59, 62, 160, 216, 237, 240
Sau3AI	GATC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	92, 288
SetI	ASST	8 cut(s)	54, 96, 129, 157, 189, 205, 277, 353
SfcI	CTRYAG	1 cut(s)	59
SmiMI	CAYNNNNRTG	1 cut(s)	167
SsiI	CCGC	3 cut(s)	216, 239, 247
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	90, 286
StyI	CCWWGG	1 cut(s)	42
TaqI	TCGA	1 cut(s)	101
TauI	GCSGC	2 cut(s)	218, 242
TscAI	CASTG	1 cut(s)	262
TseI	GCWGC	4 cut(s)	58, 61, 159, 236
TspDTI	ATGAA	2 cut(s)	20, 323
TspRI	CASTG	1 cut(s)	262
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.