FvH4_7g12150
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0012646
Physical Location & Seq
Forward (+)
11056707 .. 11057440
734 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g12150.t1

Sequence Viewer

Length: 627 bp
ATGTCGATCTCATCTGTCTCTTATTCCGGCGGGTTCGCGGCGTCGGAGCCGTCAATTTCAACGATGGCCTCCTCGCTGCCGTTGGGTACCCAGATCACATTCAACCCAACGGACTCACAACTCATGCAATTCCTTCTCCAAGACTTGGCCCCGGATTTCATCATCACCGATTGTGATCTCTTTGGCCACGAAGAGCCCTGGGCAATCTGGGACAAATATCTAGGGTTTCGAAACCAATTCAACCCAGACGAGCTTTATTTCTTCATGCCGGCCCTAAAGAAACTGAGCCCTAACGGCGGTTCGAGGATCAATCGAACAATTGGGGGTGGTAGTTGGACTCAGAAGGAGCCGTTCAAGATTGTGTGCGCTGATGAGGACGAGGGCAGGGCAATTGGGGTGAAGAGGAAGCTTAAATATCTGAACCAAGGTTCGGACCAAAATGCGCAATGGTGTTTGGATGAGTACACTAGTACTGTGGAGGGACACAAGTCATGTGCAATTTTTCGTCTCCGGCGAAACGAGCGGCAACACAAATCATTATCTGGTATTTGTGTTGAAGATTTCAATCAGACTCTACCATTAGGAGGAGCCTTGGGAAATTTGGGAGAGGTACTCTGCGGCTTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

209

Amino Acids

23.1

Weight (kDa)

5.23

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAM PF02365 32 - 156 2.8e-16 No apical meristem (NAM) protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 444
Acc65I GGTACC 1 cut(s) 86
AccB1I GGYRCC 1 cut(s) 86
AccB7I CCANNNNNTGG 1 cut(s) 145
AccBSI CCGCTC 1 cut(s) 523
AccII CGCG 1 cut(s) 38
AciI CCGC 5 cut(s) 30, 38, 297, 523, 618
AclWI GGATC 1 cut(s) 314
AcoI YGGCCR 1 cut(s) 184
AcsI RAATTY 1 cut(s) 598
AcyI GRCGYC 1 cut(s) 41
AfaI GTAC 4 cut(s) 88, 464, 472, 612
AfiI CCNNNNNNNGG 4 cut(s) 145, 296, 430, 584
AgsI TTSAA 6 cut(s) 60, 103, 241, 355, 557, 565
AhlI ACTAGT 1 cut(s) 467
AjnI CCWGG 1 cut(s) 197
AluBI AGCT 2 cut(s) 253, 409
AluI AGCT 2 cut(s) 253, 409
Alw26I GTCTC 2 cut(s) 22, 512
AlwI GGATC 1 cut(s) 314
AoxI GGCC 4 cut(s) 66, 147, 184, 270
ApeKI GCWGC 1 cut(s) 76
ApoI RAATTY 1 cut(s) 598
Asp718I GGTACC 1 cut(s) 86
AspLEI GCGC 2 cut(s) 368, 445
AspS9I GGNCC 3 cut(s) 148, 271, 433
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 2 cut(s) 157, 409
AsuII TTCGAA 1 cut(s) 229
AvaII GGWCC 1 cut(s) 433
BalI TGGCCA 1 cut(s) 186
BanI GGYRCC 1 cut(s) 86
BanII GRGCYC 2 cut(s) 198, 290
BbvI GCAGC 1 cut(s) 63
BccI CCATC 1 cut(s) 58
BceAI ACGGC 4 cut(s) 34, 64, 310, 334
BciT130I CCWGG 1 cut(s) 199
BcnI CCSGG 1 cut(s) 152
BcoDI GTCTC 2 cut(s) 22, 512
BcuI ACTAGT 1 cut(s) 467
BfaI CTAG 2 cut(s) 221, 468
BglI GCCNNNNNGGC 1 cut(s) 294
BisI GCNGC 4 cut(s) 39, 77, 524, 619
BlsI GCNGC 4 cut(s) 40, 78, 525, 620
BmcAI AGTACT 1 cut(s) 472
Bme1390I CCNGG 2 cut(s) 152, 199
Bme18I GGWCC 1 cut(s) 433
BmgT120I GGNCC 3 cut(s) 148, 271, 433
BmiI GGNNCC 5 cut(s) 48, 88, 150, 348, 589
BmrFI CCNGG 2 cut(s) 152, 199
BoxI GACNNNNGTC 1 cut(s) 487
BplI GAGNNNNNCTC 1 cut(s) 597
Bpu14I TTCGAA 1 cut(s) 229
BpuMI CCSGG 1 cut(s) 152
BsaBI GATNNNNATC 2 cut(s) 174, 564
BsaHI GRCGYC 1 cut(s) 41
BsaJI CCNNGG 5 cut(s) 150, 197, 198, 424, 591
Bsc4I CCNNNNNNNGG 4 cut(s) 145, 296, 430, 584
Bse118I RCCGGY 1 cut(s) 268
Bse3DI GCAATG 1 cut(s) 452
Bse8I GATNNNNATC 2 cut(s) 174, 564
BseBI CCWGG 1 cut(s) 199
BseDI CCNNGG 5 cut(s) 150, 197, 198, 424, 591
BseGI GGATG 1 cut(s) 463
BseJI GATNNNNATC 2 cut(s) 174, 564
BseLI CCNNNNNNNGG 4 cut(s) 145, 296, 430, 584
BseMI GCAATG 1 cut(s) 452
BseMII CTCAG 2 cut(s) 275, 353
BseRI GAGGAG 2 cut(s) 61, 600
BseXI GCAGC 1 cut(s) 63
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 4 cut(s) 68, 149, 186, 272
BshNI GGYRCC 1 cut(s) 86
BsiSI CCGG 4 cut(s) 27, 152, 269, 511
BslFI GGGAC 2 cut(s) 224, 495
BslI CCNNNNNNNGG 4 cut(s) 145, 296, 430, 584
BsmAI GTCTC 2 cut(s) 22, 512
BsmBI CGTCTC 1 cut(s) 512
BsmFI GGGAC 2 cut(s) 224, 495
BsnI GGCC 4 cut(s) 68, 149, 186, 272
Bsp119I TTCGAA 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 198, 290
Bsp143I GATC 4 cut(s) 6, 93, 175, 306
BspACI CCGC 5 cut(s) 30, 38, 297, 523, 618
BspANI GGCC 4 cut(s) 68, 149, 186, 272
BspCNI CTCAG 2 cut(s) 276, 352
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 5 cut(s) 48, 88, 150, 348, 589
BspPI GGATC 1 cut(s) 314
BspQI GCTCTTC 1 cut(s) 186
BspT104I TTCGAA 1 cut(s) 229
BspT107I GGYRCC 1 cut(s) 86
BsrBI CCGCTC 1 cut(s) 523
BsrDI GCAATG 1 cut(s) 452
BsrFI RCCGGY 1 cut(s) 268
BssAI RCCGGY 1 cut(s) 268
BssECI CCNNGG 5 cut(s) 150, 197, 198, 424, 591
BssMI GATC 4 cut(s) 6, 93, 175, 306
BssNI GRCGYC 1 cut(s) 41
BssT1I CCWWGG 2 cut(s) 424, 591
Bst2UI CCWGG 1 cut(s) 199
Bst4CI ACNGT 1 cut(s) 475
Bst6I CTCTTC 2 cut(s) 186, 395
BstACI GRCGYC 1 cut(s) 41
BstBI TTCGAA 1 cut(s) 229
BstC8I GCNNGC 1 cut(s) 270
BstDEI CTNAG 2 cut(s) 284, 339
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 1 cut(s) 38
BstHHI GCGC 2 cut(s) 368, 445
BstKTI GATC 4 cut(s) 9, 96, 178, 309
BstMAI GTCTC 2 cut(s) 22, 512
BstMBI GATC 4 cut(s) 6, 93, 175, 306
BstMWI GCNNNNNNNGC 2 cut(s) 294, 520
BstNI CCWGG 1 cut(s) 199
BstPAI GACNNNNGTC 1 cut(s) 487
BstSCI CCNGG 2 cut(s) 150, 197
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 1 cut(s) 63
BsuRI GGCC 4 cut(s) 68, 149, 186, 272
BtsCI GGATG 1 cut(s) 463
Cac8I GCNNGC 1 cut(s) 270
CfoI GCGC 2 cut(s) 368, 445
Cfr10I RCCGGY 1 cut(s) 268
Cfr13I GGNCC 3 cut(s) 148, 271, 433
CseI GACGC 1 cut(s) 30
Csp6I GTAC 4 cut(s) 87, 463, 471, 611
CviAII CATG 3 cut(s) 124, 265, 492
CviQI GTAC 4 cut(s) 87, 463, 471, 611
DdeI CTNAG 2 cut(s) 284, 339
DpnI GATC 4 cut(s) 8, 95, 177, 308
DpnII GATC 4 cut(s) 6, 93, 175, 306
EaeI YGGCCR 1 cut(s) 184
Eam1104I CTCTTC 2 cut(s) 186, 395
EarI CTCTTC 2 cut(s) 186, 395
Eco130I CCWWGG 2 cut(s) 424, 591
Eco24I GRGCYC 2 cut(s) 198, 290
Eco47I GGWCC 1 cut(s) 433
EcoRII CCWGG 1 cut(s) 197
EcoT14I CCWWGG 2 cut(s) 424, 591
EcoT38I GRGCYC 2 cut(s) 198, 290
ErhI CCWWGG 2 cut(s) 424, 591
Esp3I CGTCTC 1 cut(s) 512
FaeI CATG 3 cut(s) 127, 268, 495
FaiI YATR 3 cut(s) 125, 266, 493
FaqI GGGAC 2 cut(s) 224, 495
FatI CATG 3 cut(s) 123, 264, 491
FauI CCCGC 1 cut(s) 23
Fnu4HI GCNGC 4 cut(s) 39, 77, 524, 619
FokI GGATG 1 cut(s) 470
FriOI GRGCYC 2 cut(s) 198, 290
Fsp4HI GCNGC 4 cut(s) 39, 77, 524, 619
FspBI CTAG 2 cut(s) 221, 468
FspI TGCGCA 1 cut(s) 444
GlaI GCGC 2 cut(s) 367, 444
GluI GCNGC 4 cut(s) 39, 77, 524, 619
HaeIII GGCC 4 cut(s) 68, 149, 186, 272
HapII CCGG 4 cut(s) 27, 152, 269, 511
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 368, 445
Hin1I GRCGYC 1 cut(s) 41
Hin1II CATG 3 cut(s) 127, 268, 495
Hin6I GCGC 2 cut(s) 366, 443
HinP1I GCGC 2 cut(s) 366, 443
HindIII AAGCTT 1 cut(s) 407
HinfI GANTC 3 cut(s) 113, 337, 571
HpaII CCGG 4 cut(s) 27, 152, 269, 511
HphI GGTGA 2 cut(s) 157, 409
Hpy166II GTNNAC 1 cut(s) 465
Hpy188I TCNGA 5 cut(s) 46, 342, 420, 433, 570
Hpy188III TCNNGA 1 cut(s) 355
Hpy8I GTNNAC 1 cut(s) 465
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 2 cut(s) 143, 337
HpyCH4III ACNGT 1 cut(s) 475
HpyCH4V TGCA 2 cut(s) 127, 497
HpyF10VI GCNNNNNNNGC 2 cut(s) 294, 520
HpyF3I CTNAG 2 cut(s) 284, 339
Hsp92I GRCGYC 1 cut(s) 41
Hsp92II CATG 3 cut(s) 127, 268, 495
HspAI GCGC 2 cut(s) 366, 443
KpnI GGTACC 1 cut(s) 90
KroI GCCGGC 1 cut(s) 268
KroNI GCCGGC 1 cut(s) 270
Kzo9I GATC 4 cut(s) 6, 93, 175, 306
LguI GCTCTTC 1 cut(s) 186
LmnI GCTCC 3 cut(s) 46, 346, 587
Lsp1109I GCAGC 1 cut(s) 63
MaeI CTAG 2 cut(s) 221, 468
MalI GATC 4 cut(s) 8, 95, 177, 308
MbiI CCGCTC 1 cut(s) 523
MboI GATC 4 cut(s) 6, 93, 175, 306
MboII GAAGA 4 cut(s) 203, 253, 412, 569
MfeI CAATTG 2 cut(s) 318, 390
MhlI GDGCHC 2 cut(s) 198, 290
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 7 cut(s) 54, 128, 236, 318, 390, 498, 598
MluNI TGGCCA 1 cut(s) 186
MlyI GAGTC 3 cut(s) 107, 331, 565
MmeI TCCRAC 2 cut(s) 24, 314
MnlI CCTC 9 cut(s) 79, 82, 297, 367, 373, 396, 472, 578, 601
Mox20I TGGCCA 1 cut(s) 186
MroNI GCCGGC 1 cut(s) 268
MscI TGGCCA 1 cut(s) 186
MseI TTAA 2 cut(s) 411, 625
Msp20I TGGCCA 1 cut(s) 186
MspI CCGG 4 cut(s) 27, 152, 269, 511
MspR9I CCNGG 2 cut(s) 152, 199
MunI CAATTG 2 cut(s) 318, 390
MvaI CCWGG 1 cut(s) 199
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 2 cut(s) 294, 520
NaeI GCCGGC 1 cut(s) 270
NciI CCSGG 1 cut(s) 152
NdeII GATC 4 cut(s) 6, 93, 175, 306
NgoMIV GCCGGC 1 cut(s) 268
NlaIII CATG 3 cut(s) 127, 268, 495
NlaIV GGNNCC 5 cut(s) 48, 88, 150, 348, 589
NsbI TGCGCA 1 cut(s) 444
NspV TTCGAA 1 cut(s) 229
PasI CCCWGGG 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 186
PcsI WCGNNNNNNNCGW 1 cut(s) 511
PdiI GCCGGC 1 cut(s) 270
PflMI CCANNNNNTGG 1 cut(s) 145
PkrI GCNGC 4 cut(s) 40, 78, 525, 620
PleI GAGTC 3 cut(s) 107, 331, 565
PpsI GAGTC 3 cut(s) 107, 331, 565
PshAI GACNNNNGTC 1 cut(s) 487
Psp6I CCWGG 1 cut(s) 197
PspGI CCWGG 1 cut(s) 197
PspN4I GGNNCC 5 cut(s) 48, 88, 150, 348, 589
PspPI GGNCC 3 cut(s) 148, 271, 433
RsaI GTAC 4 cut(s) 88, 464, 472, 612
RsaNI GTAC 4 cut(s) 87, 463, 471, 611
SapI GCTCTTC 1 cut(s) 186
SaqAI TTAA 2 cut(s) 411, 625
SatI GCNGC 4 cut(s) 39, 77, 524, 619
Sau3AI GATC 4 cut(s) 6, 93, 175, 306
Sau96I GGNCC 3 cut(s) 148, 271, 433
ScaI AGTACT 1 cut(s) 472
SchI GAGTC 3 cut(s) 107, 331, 565
ScrFI CCNGG 2 cut(s) 152, 199
SduI GDGCHC 2 cut(s) 198, 290
SetI ASST 4 cut(s) 255, 411, 430, 612
SfuI TTCGAA 1 cut(s) 229
SinI GGWCC 1 cut(s) 433
SpeI ACTAGT 1 cut(s) 467
Sse9I AATT 7 cut(s) 54, 128, 236, 318, 390, 498, 598
SsiI CCGC 5 cut(s) 30, 38, 297, 523, 618
SspMI CTAG 2 cut(s) 221, 468
StyD4I CCNGG 2 cut(s) 150, 197
StyI CCWWGG 2 cut(s) 424, 591
TaaI ACNGT 1 cut(s) 475
TaqI TCGA 4 cut(s) 5, 229, 302, 313
TasI AATT 7 cut(s) 54, 128, 236, 318, 390, 498, 598
TatI WGTACW 2 cut(s) 462, 470
TauI GCSGC 3 cut(s) 41, 526, 621
Tru1I TTAA 2 cut(s) 411, 625
Tru9I TTAA 2 cut(s) 411, 625
TseI GCWGC 1 cut(s) 76
TspDTI ATGAA 2 cut(s) 148, 253
TspGWI ACGGA 1 cut(s) 125
Van91I CCANNNNNTGG 1 cut(s) 145
VpaK11BI GGWCC 1 cut(s) 433
XapI RAATTY 1 cut(s) 598
XspI CTAG 2 cut(s) 221, 468
ZrmI AGTACT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.