Rh1BG199500
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0012646
Physical Location & Seq
Forward (+)
31585151 .. 31585822
672 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG199500.1

Sequence Viewer

Length: 672 bp
ATGTATTGCTCAATTAGTGTCATCAAAGCTCCCCCAGTGGGTATTAATTTTGATGATGAAGGCGAGGCCGATCAAGAAAGAAAGCCGATTGGGAGAAAGAAAAAACTTAGATATGTTAACCAAGGCTCTGTGCATCATGGGGAGTGGTATTTGGAAGAGTACACAAGCCTTGTTGATGAGGGTGCAATTTTGCTTCTTCGAAAAAACGAGCGGTACAAAGCACTAGCTTCATCAATGTCGTCAGGAATTCCAAGGGAAAAGAAGAGGAAACACAGAGAGATTGATCGATTGGAGGAGAAGAAGCCTAGAAAGAAAAAAGCTTCCAGACAACTAGTAATGCAGGACTCGGATTTACTTGATAGGCAAACCCAAACAGCTACCAGTCCCACAATGCCTATTCAACAACAAGAACCTGACAGTGGTGGTGATGATAATTTCGTGTTCTTCAAGGATATTGATATTGGAACATGGGAGTTTCATTCTCTGGATGATTTTGTCATGGCTTGTCCTCCTTCACTTACGGAATGTGATCAAGAAGCATTAGCAACCCTTGAGTTTCCTTCTCTGGATGATTTTGTCATGGCTTGTTCTCCTCCACTTATGGATTGTGATCAAGAAGCATTAGCAACCCTTGAGTTTCCAAAATATACTTATCAAACCCCTAATATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

223

Amino Acids

25.5

Weight (kDa)

4.99

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 211
AciI CCGC 1 cut(s) 211
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 2 cut(s) 161, 215
AfiI CCNNNNNNNGG 2 cut(s) 38, 419
AgsI TTSAA 2 cut(s) 401, 448
AhlI ACTAGT 1 cut(s) 331
AluBI AGCT 4 cut(s) 29, 227, 320, 377
AluI AGCT 4 cut(s) 29, 227, 320, 377
AoxI GGCC 1 cut(s) 66
ApoI RAATTY 1 cut(s) 246
AseI ATTAAT 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 437
AsuII TTCGAA 1 cut(s) 199
BclI TGATCA 2 cut(s) 529, 610
BcuI ACTAGT 1 cut(s) 331
BfaI CTAG 3 cut(s) 224, 306, 332
BmrI ACTGGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 142
BmuI ACTGGG 1 cut(s) 29
Bpu14I TTCGAA 1 cut(s) 199
BpuEI CTTGAG 2 cut(s) 572, 653
Bsa29I ATCGAT 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 609
BsaJI CCNNGG 2 cut(s) 121, 251
Bsc4I CCNNNNNNNGG 2 cut(s) 38, 419
Bse1I ACTGG 2 cut(s) 35, 381
Bse8I GATNNNNATC 1 cut(s) 609
BseCI ATCGAT 1 cut(s) 286
BseDI CCNNGG 2 cut(s) 121, 251
BseGI GGATG 2 cut(s) 493, 574
BseJI GATNNNNATC 1 cut(s) 609
BseLI CCNNNNNNNGG 2 cut(s) 38, 419
BseNI ACTGG 2 cut(s) 35, 381
BseRI GAGGAG 2 cut(s) 308, 582
BshFI GGCC 1 cut(s) 68
BshVI ATCGAT 1 cut(s) 286
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 2 cut(s) 38, 419
BsmFI GGGAC 1 cut(s) 369
BsnI GGCC 1 cut(s) 68
Bsp119I TTCGAA 1 cut(s) 199
Bsp143I GATC 4 cut(s) 70, 283, 529, 610
BspACI CCGC 1 cut(s) 211
BspANI GGCC 1 cut(s) 68
BspDI ATCGAT 1 cut(s) 286
BspT104I TTCGAA 1 cut(s) 199
BsrBI CCGCTC 1 cut(s) 211
BsrI ACTGG 2 cut(s) 35, 381
BssECI CCNNGG 2 cut(s) 121, 251
BssMI GATC 4 cut(s) 70, 283, 529, 610
BssT1I CCWWGG 2 cut(s) 121, 251
Bst4CI ACNGT 1 cut(s) 419
Bst6I CTCTTC 2 cut(s) 150, 257
BstBI TTCGAA 1 cut(s) 199
BstDEI CTNAG 1 cut(s) 107
BstF5I GGATG 2 cut(s) 493, 574
BstKTI GATC 4 cut(s) 73, 286, 532, 613
BstMBI GATC 4 cut(s) 70, 283, 529, 610
Bsu15I ATCGAT 1 cut(s) 286
BsuRI GGCC 1 cut(s) 68
BsuTUI ATCGAT 1 cut(s) 286
BtsCI GGATG 2 cut(s) 493, 574
BtsIMutI CAGTG 2 cut(s) 42, 424
ClaI ATCGAT 1 cut(s) 286
Csp6I GTAC 2 cut(s) 160, 214
CviAII CATG 4 cut(s) 137, 468, 499, 580
CviQI GTAC 2 cut(s) 160, 214
DdeI CTNAG 1 cut(s) 107
DpnI GATC 4 cut(s) 72, 285, 531, 612
DpnII GATC 4 cut(s) 70, 283, 529, 610
Eam1104I CTCTTC 2 cut(s) 150, 257
EarI CTCTTC 2 cut(s) 150, 257
Eco130I CCWWGG 2 cut(s) 121, 251
EcoRI GAATTC 1 cut(s) 246
EcoT14I CCWWGG 2 cut(s) 121, 251
ErhI CCWWGG 2 cut(s) 121, 251
FaeI CATG 4 cut(s) 140, 471, 502, 583
FaiI YATR 9 cut(s) 114, 138, 469, 500, 581, 602, 648, 668, 670
FaqI GGGAC 1 cut(s) 369
FatI CATG 4 cut(s) 136, 467, 498, 579
FbaI TGATCA 2 cut(s) 529, 610
FokI GGATG 2 cut(s) 500, 581
FspBI CTAG 3 cut(s) 224, 306, 332
HaeIII GGCC 1 cut(s) 68
Hin1II CATG 4 cut(s) 140, 471, 502, 583
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 318
HinfI GANTC 1 cut(s) 344
HpaI GTTAAC 1 cut(s) 118
HphI GGTGA 1 cut(s) 437
Hpy166II GTNNAC 2 cut(s) 118, 162
Hpy188I TCNGA 1 cut(s) 349
Hpy188III TCNNGA 7 cut(s) 74, 243, 324, 485, 533, 566, 614
Hpy8I GTNNAC 2 cut(s) 118, 162
HpyAV CCTTC 3 cut(s) 53, 522, 570
HpyCH4III ACNGT 1 cut(s) 419
HpyCH4V TGCA 3 cut(s) 133, 185, 340
HpyF3I CTNAG 1 cut(s) 107
Hsp92II CATG 4 cut(s) 140, 471, 502, 583
Ksp22I TGATCA 2 cut(s) 529, 610
KspAI GTTAAC 1 cut(s) 118
Kzo9I GATC 4 cut(s) 70, 283, 529, 610
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 8 cut(s) 48, 228, 326, 337, 394, 426, 470, 551
LweI GCATC 1 cut(s) 142
MaeI CTAG 3 cut(s) 224, 306, 332
MalI GATC 4 cut(s) 72, 285, 531, 612
MbiI CCGCTC 1 cut(s) 211
MboI GATC 4 cut(s) 70, 283, 529, 610
MboII GAAGA 5 cut(s) 167, 188, 274, 310, 436
MluCI AATT 5 cut(s) 12, 46, 186, 246, 433
MlyI GAGTC 1 cut(s) 338
MnlI CCTC 6 cut(s) 58, 172, 258, 286, 519, 603
MseI TTAA 2 cut(s) 45, 117
NdeII GATC 4 cut(s) 70, 283, 529, 610
NlaIII CATG 4 cut(s) 140, 471, 502, 583
NspV TTCGAA 1 cut(s) 199
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
PshBI ATTAAT 1 cut(s) 45
RsaI GTAC 2 cut(s) 161, 215
RsaNI GTAC 2 cut(s) 160, 214
SaqAI TTAA 2 cut(s) 45, 117
Sau3AI GATC 4 cut(s) 70, 283, 529, 610
SchI GAGTC 1 cut(s) 338
SetI ASST 5 cut(s) 31, 229, 322, 379, 415
SfaNI GCATC 1 cut(s) 142
SfuI TTCGAA 1 cut(s) 199
SmlI CTYRAG 2 cut(s) 551, 632
SmoI CTYRAG 2 cut(s) 551, 632
SpeI ACTAGT 1 cut(s) 331
Sse9I AATT 5 cut(s) 12, 46, 186, 246, 433
SsiI CCGC 1 cut(s) 211
SspMI CTAG 3 cut(s) 224, 306, 332
StyI CCWWGG 2 cut(s) 121, 251
TaaI ACNGT 1 cut(s) 419
TaqI TCGA 2 cut(s) 199, 286
TasI AATT 5 cut(s) 12, 46, 186, 246, 433
TatI WGTACW 1 cut(s) 159
Tru1I TTAA 2 cut(s) 45, 117
Tru9I TTAA 2 cut(s) 45, 117
TscAI CASTG 2 cut(s) 42, 424
TspDTI ATGAA 3 cut(s) 72, 219, 467
TspGWI ACGGA 1 cut(s) 536
TspRI CASTG 2 cut(s) 42, 424
VspI ATTAAT 1 cut(s) 45
XapI RAATTY 1 cut(s) 246
XspI CTAG 3 cut(s) 224, 306, 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.