Rh1AG229700
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0012646
Physical Location & Seq
Forward (+)
43591699 .. 43592031
333 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG229700.1

Sequence Viewer

Length: 333 bp
ATGTCGATTTCATCTTCTTCTTATTCCGGTGGGTTTCTCACGTCCGAGCCCTCAAATTCGATGGTGGCCTCCTCGTCTTCTTCTGGGTCTGTGATGCCAACGCTGCCGTTAGGTATGAAGATGTCATTCATCCCCACCGATTCACTGCTCATCAGGTTTATTCTCCACGATTCTGCCCCGAATTTTATTATTACTGATTGCGATCTATTTGGCCAGGAAGAGCCCTGGGAAATCTGGGACAGATATCTAGGGTTTCTAAACCAATACAACCCAGATGAACTTTACTTCTTCATGCCTTCGTTAAAGAAACTGAGATGCCAACGCTGCCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

110

Amino Acids

12.47

Weight (kDa)

4.9

Isoelectric Point (pI)

61.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcoI YGGCCR 1 cut(s) 211
AcsI RAATTY 2 cut(s) 55, 181
AjiI CACGTC 1 cut(s) 42
AjnI CCWGG 2 cut(s) 213, 224
AoxI GGCC 2 cut(s) 66, 211
ApeKI GCWGC 2 cut(s) 103, 324
ApoI RAATTY 2 cut(s) 55, 181
BalI TGGCCA 1 cut(s) 213
BanII GRGCYC 2 cut(s) 51, 225
BbsI GAAGAC 1 cut(s) 69
BbvI GCAGC 2 cut(s) 90, 311
BccI CCATC 1 cut(s) 55
BceAI ACGGC 2 cut(s) 91, 312
BciT130I CCWGG 2 cut(s) 215, 226
BfaI CTAG 1 cut(s) 248
BisI GCNGC 2 cut(s) 104, 325
BlsI GCNGC 2 cut(s) 105, 326
Bme1390I CCNGG 2 cut(s) 215, 226
BmgBI CACGTC 1 cut(s) 42
BmrFI CCNGG 2 cut(s) 215, 226
BmsI GCATC 2 cut(s) 84, 305
BpiI GAAGAC 1 cut(s) 69
BsaBI GATNNNNATC 1 cut(s) 201
BsaJI CCNNGG 2 cut(s) 224, 225
BsaWI WCCGGW 1 cut(s) 26
Bse8I GATNNNNATC 1 cut(s) 201
BseBI CCWGG 2 cut(s) 215, 226
BseDI CCNNGG 2 cut(s) 224, 225
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 201
BseMII CTCAG 1 cut(s) 302
BseRI GAGGAG 1 cut(s) 61
BseXI GCAGC 2 cut(s) 90, 311
BshFI GGCC 2 cut(s) 68, 213
BsiSI CCGG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 251
BsnI GGCC 2 cut(s) 68, 213
Bsp1286I GDGCHC 2 cut(s) 51, 225
Bsp143I GATC 1 cut(s) 202
BspANI GGCC 2 cut(s) 68, 213
BspCNI CTCAG 1 cut(s) 303
BspQI GCTCTTC 1 cut(s) 213
BssECI CCNNGG 2 cut(s) 224, 225
BssMI GATC 1 cut(s) 202
Bst2UI CCWGG 2 cut(s) 215, 226
Bst6I CTCTTC 1 cut(s) 213
BstDEI CTNAG 1 cut(s) 311
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 1 cut(s) 205
BstMBI GATC 1 cut(s) 202
BstMWI GCNNNNNNNGC 2 cut(s) 103, 324
BstNI CCWGG 2 cut(s) 215, 226
BstSCI CCNGG 2 cut(s) 213, 224
BstV1I GCAGC 2 cut(s) 90, 311
BstV2I GAAGAC 1 cut(s) 69
BsuRI GGCC 2 cut(s) 68, 213
BtrI CACGTC 1 cut(s) 42
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 143
CviAII CATG 1 cut(s) 292
CviJI RGCY 4 cut(s) 49, 68, 213, 223
CviKI_1 RGCY 4 cut(s) 49, 68, 213, 223
DdeI CTNAG 1 cut(s) 311
DpnI GATC 1 cut(s) 204
DpnII GATC 1 cut(s) 202
EaeI YGGCCR 1 cut(s) 211
Eam1104I CTCTTC 1 cut(s) 213
EarI CTCTTC 1 cut(s) 213
Eco24I GRGCYC 2 cut(s) 51, 225
Eco32I GATATC 1 cut(s) 245
EcoRII CCWGG 2 cut(s) 213, 224
EcoRV GATATC 1 cut(s) 245
EcoT38I GRGCYC 2 cut(s) 51, 225
FaeI CATG 1 cut(s) 295
FaiI YATR 2 cut(s) 116, 293
FaqI GGGAC 1 cut(s) 251
FatI CATG 1 cut(s) 291
Fnu4HI GCNGC 2 cut(s) 104, 325
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 2 cut(s) 51, 225
Fsp4HI GCNGC 2 cut(s) 104, 325
FspBI CTAG 1 cut(s) 248
GluI GCNGC 2 cut(s) 104, 325
HaeIII GGCC 2 cut(s) 68, 213
HapII CCGG 1 cut(s) 27
Hin1II CATG 1 cut(s) 295
HinfI GANTC 2 cut(s) 140, 170
HpaII CCGG 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 306
HpyCH4IV ACGT 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 2 cut(s) 103, 324
HpyF3I CTNAG 1 cut(s) 311
HpySE526I ACGT 1 cut(s) 41
Hsp92II CATG 1 cut(s) 295
Kzo9I GATC 1 cut(s) 202
LguI GCTCTTC 1 cut(s) 213
LpnPI CCDG 9 cut(s) 40, 69, 139, 200, 211, 220, 227, 238, 285
Lsp1109I GCAGC 2 cut(s) 90, 311
LweI GCATC 2 cut(s) 84, 305
MaeI CTAG 1 cut(s) 248
MaeII ACGT 1 cut(s) 41
MalI GATC 1 cut(s) 204
MboI GATC 1 cut(s) 202
MboII GAAGA 7 cut(s) 6, 9, 69, 72, 130, 230, 280
MhlI GDGCHC 2 cut(s) 51, 225
MlsI TGGCCA 1 cut(s) 213
MluCI AATT 2 cut(s) 55, 181
MluNI TGGCCA 1 cut(s) 213
MnlI CCTC 3 cut(s) 61, 79, 82
Mox20I TGGCCA 1 cut(s) 213
MscI TGGCCA 1 cut(s) 213
MseI TTAA 1 cut(s) 302
Msp20I TGGCCA 1 cut(s) 213
MspI CCGG 1 cut(s) 27
MspR9I CCNGG 2 cut(s) 215, 226
MvaI CCWGG 2 cut(s) 215, 226
MwoI GCNNNNNNNGC 2 cut(s) 103, 324
NdeII GATC 1 cut(s) 202
NlaIII CATG 1 cut(s) 295
PasI CCCWGGG 1 cut(s) 225
PciSI GCTCTTC 1 cut(s) 213
PfeI GAWTC 2 cut(s) 140, 170
PkrI GCNGC 2 cut(s) 105, 326
Psp6I CCWGG 2 cut(s) 213, 224
PspGI CCWGG 2 cut(s) 213, 224
SapI GCTCTTC 1 cut(s) 213
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 2 cut(s) 104, 325
Sau3AI GATC 1 cut(s) 202
ScrFI CCNGG 2 cut(s) 215, 226
SduI GDGCHC 2 cut(s) 51, 225
SetI ASST 3 cut(s) 44, 115, 158
SfaNI GCATC 2 cut(s) 84, 305
Sse9I AATT 2 cut(s) 55, 181
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 2 cut(s) 213, 224
TaiI ACGT 1 cut(s) 44
TaqI TCGA 2 cut(s) 5, 59
TasI AATT 2 cut(s) 55, 181
TfiI GAWTC 2 cut(s) 140, 170
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 150
TseI GCWGC 2 cut(s) 103, 324
TspDTI ATGAA 4 cut(s) 118, 131, 280, 291
TspRI CASTG 1 cut(s) 150
XapI RAATTY 2 cut(s) 55, 181
XspI CTAG 1 cut(s) 248
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.