Rorug06G0023100
NAC Family

(NAC) domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012646
Physical Location & Seq
Reverse (-)
2881870 .. 2882287
418 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0023100.1

Sequence Viewer

Length: 321 bp
ATGTATGGTGGAGGTAGGAGAGGCTCAATGGGCCTTTGTTCTGAATTGAAAGCAGAGTTGTGCTGCAATGGCCTAATGTCAGCTGATAAACATGAATTTCAATCGAAAATCGCAAACCTCATCACCTTGCTGGAAGAGGTTGAGGACAGATGTGAGAAGTACTACCATCAAGTGGAAGAAGTGATGTCATCATTTGAGATGGTAGTAGGTGCAGGAGCAGCAAAGTCTTACACAGCTCTGGCTCTCAAGGCCATGTCCAGGCACTTTGGCAGCTTAAGGGATGCAATAAGTCACATATATATGCAGAAAAGCGAAAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
NAM

Protein Analysis

106

Amino Acids

11.76

Weight (kDa)

6.06

Isoelectric Point (pI)

54.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
POX PF07526 24 - 97 1e-29 Associated with HOX
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 172
AcsI RAATTY 1 cut(s) 95
AfaI GTAC 1 cut(s) 161
AfiI CCNNNNNNNGG 2 cut(s) 172, 258
AflII CTTAAG 1 cut(s) 274
AgsI TTSAA 2 cut(s) 49, 101
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 3 cut(s) 83, 236, 273
AluI AGCT 3 cut(s) 83, 236, 273
AoxI GGCC 3 cut(s) 31, 70, 249
ApeKI GCWGC 3 cut(s) 63, 218, 270
ApoI RAATTY 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 31
AsuHPI GGTGA 1 cut(s) 115
BbvI GCAGC 3 cut(s) 50, 230, 282
BccI CCATC 2 cut(s) 174, 193
BciT130I CCWGG 1 cut(s) 259
BfrI CTTAAG 1 cut(s) 274
BisI GCNGC 3 cut(s) 64, 219, 271
BlsI GCNGC 3 cut(s) 65, 220, 272
BmcAI AGTACT 1 cut(s) 161
Bme1390I CCNGG 1 cut(s) 259
BmgT120I GGNCC 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 259
BmsI GCATC 1 cut(s) 271
BpuEI CTTGAG 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 258
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 286
BseLI CCNNNNNNNGG 2 cut(s) 172, 258
BseMI GCAATG 1 cut(s) 73
BseXI GCAGC 3 cut(s) 50, 230, 282
BsgI GTGCAG 1 cut(s) 231
BshFI GGCC 3 cut(s) 33, 72, 251
BslI CCNNNNNNNGG 2 cut(s) 172, 258
BsnI GGCC 3 cut(s) 33, 72, 251
BspANI GGCC 3 cut(s) 33, 72, 251
BspTI CTTAAG 1 cut(s) 274
BsrDI GCAATG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 129
BstAFI CTTAAG 1 cut(s) 274
BstF5I GGATG 1 cut(s) 286
BstMWI GCNNNNNNNGC 4 cut(s) 30, 69, 218, 248
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 257
BstV1I GCAGC 3 cut(s) 50, 230, 282
BsuRI GGCC 3 cut(s) 33, 72, 251
BtsCI GGATG 1 cut(s) 286
Cfr13I GGNCC 1 cut(s) 31
Csp6I GTAC 1 cut(s) 160
CviAII CATG 2 cut(s) 92, 253
CviJI RGCY 8 cut(s) 24, 33, 72, 83, 236, 242, 251, 273
CviKI_1 RGCY 8 cut(s) 24, 33, 72, 83, 236, 242, 251, 273
CviQI GTAC 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 129
EarI CTCTTC 1 cut(s) 129
EcoRII CCWGG 1 cut(s) 257
FaeI CATG 2 cut(s) 95, 256
FaiI YATR 7 cut(s) 6, 93, 254, 296, 298, 300, 302
FatI CATG 2 cut(s) 91, 252
Fnu4HI GCNGC 3 cut(s) 64, 219, 271
FokI GGATG 1 cut(s) 293
Fsp4HI GCNGC 3 cut(s) 64, 219, 271
GluI GCNGC 3 cut(s) 64, 219, 271
HaeIII GGCC 3 cut(s) 33, 72, 251
Hin1II CATG 2 cut(s) 95, 256
HphI GGTGA 1 cut(s) 115
Hpy188I TCNGA 1 cut(s) 43
HpyCH4V TGCA 4 cut(s) 66, 212, 284, 304
HpyF10VI GCNNNNNNNGC 4 cut(s) 30, 69, 218, 248
Hsp92II CATG 2 cut(s) 95, 256
LmnI GCTCC 1 cut(s) 215
LpnPI CCDG 5 cut(s) 116, 198, 224, 244, 271
Lsp1109I GCAGC 3 cut(s) 50, 230, 282
LweI GCATC 1 cut(s) 271
MaeIII GTNAC 1 cut(s) 290
MboII GAAGA 2 cut(s) 146, 188
MluCI AATT 2 cut(s) 44, 95
MnlI CCTC 5 cut(s) 5, 14, 128, 130, 136
MseI TTAA 1 cut(s) 275
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 83
MspCI CTTAAG 1 cut(s) 274
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 4 cut(s) 30, 69, 218, 248
NlaIII CATG 2 cut(s) 95, 256
NmuCI GTSAC 1 cut(s) 290
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 3 cut(s) 65, 220, 272
Psp6I CCWGG 1 cut(s) 257
PspGI CCWGG 1 cut(s) 257
PspPI GGNCC 1 cut(s) 31
PvuII CAGCTG 1 cut(s) 83
RsaI GTAC 1 cut(s) 161
RsaNI GTAC 1 cut(s) 160
RseI CAYNNNNRTG 1 cut(s) 299
SaqAI TTAA 1 cut(s) 275
SatI GCNGC 3 cut(s) 64, 219, 271
Sau96I GGNCC 1 cut(s) 31
ScaI AGTACT 1 cut(s) 161
ScrFI CCNGG 1 cut(s) 259
SetI ASST 8 cut(s) 16, 85, 120, 128, 141, 211, 238, 275
SfaNI GCATC 1 cut(s) 271
SmiMI CAYNNNNRTG 1 cut(s) 299
SmlI CTYRAG 2 cut(s) 245, 274
SmoI CTYRAG 2 cut(s) 245, 274
Sse9I AATT 2 cut(s) 44, 95
StyD4I CCNGG 1 cut(s) 257
TaqI TCGA 1 cut(s) 104
TasI AATT 2 cut(s) 44, 95
TatI WGTACW 1 cut(s) 159
Tru1I TTAA 1 cut(s) 275
Tru9I TTAA 1 cut(s) 275
TseFI GTSAC 1 cut(s) 290
TseI GCWGC 3 cut(s) 63, 218, 270
Tsp45I GTSAC 1 cut(s) 290
TspDTI ATGAA 1 cut(s) 108
Van91I CCANNNNNTGG 1 cut(s) 172
Vha464I CTTAAG 1 cut(s) 274
XapI RAATTY 1 cut(s) 95
ZrmI AGTACT 1 cut(s) 161
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.