Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0012646

Physical Location & Seq

Genomic Coordinates Forward (+)

43587034 .. 43587804

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG229500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGGAATTATCACTGGTTAGTCTTTTCAAACACTCAATCATAAAGCAGGGCTTCACACCACCCTCATGTTGCTTCACTGAATCTATCTTCCTTTTATTCAAGTTATGTATTGCCAAATCAGTGTCATCAAAGATCCCCCAGTGGGTATTAATTTTGATGATGAAGGCGAGGCCGATTAAGAAAGAAAGCCGATTGGGAGAAAGAGAAAACTTAGATATGTTAACCAATGTGCATCATGGGGAGTGGTATTTGGAAGAGTACACAAGCCTTGTTGATGAGGGTGCGATTTTGCTTATTCGAAAAAACGAGCGGTACAAAGCACCAGCTTCATCAATGTCGTCAGGAATTCCAAGGGAAAAGAAGAGGAAACACAGAGAAATTGATCGATTGGAGGAGAAGAAGCCTAGAAAGAAAAAAGCTTCCAGACTACTAGTAATGCAGGACTCGGATTTACTTGATAGTCAAAGCCAAACTGCTACCAGTCCCACAGTGCCTATTCAACAACAGGAACCTGACAGTGGTGGTGATGATAATTTTGTGTTCTCCAAGGATATTGATATTGGAACATGGGAGTTTCCTTCTCTGGATGATTTTGTCATGGCTCGTCCTCCTTCACTTACGGAATGTGATCAAGAAGCATTAGCAACCCTTGAGTTTCCTTCTCTGGACGATTTTGTCATGGCTTGTTCTCCTCCACTTATGGATTGTGATCAAGAAGCATTAGCAACCCTTGAGTTTCCAAAATATACTTATCAAACCCCTAATATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

256

Amino Acids

29.18

Weight (kDa)

5.28

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0012646)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_7g12150
rosa_chinensis	RchiOBHm_Chr1g0350911
rosa_laevigata	RLG00000028443 RLG00000028444
rosa_multiflora	Rmu_sc0014584.1_g000008 Rmu_sc0014584.1_g000010
rosa_roxburghii	Rroxscaffold_4G00304380 Rroxscaffold_4G00304420
rosa_rugosa	Rorug01G0215100 Rorug06G0023100 Rorug06G0023200
rosa_samantha	Rh1AG229500 Rh1AG229700 Rh1AG229800 Rh1BG075100 Rh1BG199500 Rh1BG199700 Rh1DG227500
rosa_wichuraiana	Rw1G019890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	674
AccBSI	CCGCTC	1 cut(s)	310
AciI	CCGC	1 cut(s)	310
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	345
AfaI	GTAC	2 cut(s)	260, 314
AfiI	CCNNNNNNNGG	2 cut(s)	142, 518
AgsI	TTSAA	3 cut(s)	28, 100, 500
AhlI	ACTAGT	1 cut(s)	430
AluBI	AGCT	2 cut(s)	326, 419
AluI	AGCT	2 cut(s)	326, 419
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	170
ApoI	RAATTY	1 cut(s)	345
AseI	ATTAAT	1 cut(s)	149
AsuHPI	GGTGA	1 cut(s)	536
AsuII	TTCGAA	1 cut(s)	298
BclI	TGATCA	2 cut(s)	628, 709
BcuI	ACTAGT	1 cut(s)	430
BfaI	CTAG	2 cut(s)	405, 431
BmiI	GGNNCC	1 cut(s)	510
BmrI	ACTGGG	1 cut(s)	133
BmsI	GCATC	1 cut(s)	241
BmuI	ACTGGG	1 cut(s)	133
Bpu14I	TTCGAA	1 cut(s)	298
BpuEI	CTTGAG	2 cut(s)	671, 752
Bsa29I	ATCGAT	1 cut(s)	385
BsaBI	GATNNNNATC	1 cut(s)	708
BsaJI	CCNNGG	2 cut(s)	350, 546
Bsc4I	CCNNNNNNNGG	2 cut(s)	142, 518
Bse1I	ACTGG	3 cut(s)	18, 139, 480
Bse8I	GATNNNNATC	1 cut(s)	708
BseCI	ATCGAT	1 cut(s)	385
BseDI	CCNNGG	2 cut(s)	350, 546
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	708
BseLI	CCNNNNNNNGG	2 cut(s)	142, 518
BseNI	ACTGG	3 cut(s)	18, 139, 480
BseRI	GAGGAG	2 cut(s)	407, 681
BshFI	GGCC	1 cut(s)	172
BshVI	ATCGAT	1 cut(s)	385
BslFI	GGGAC	1 cut(s)	468
BslI	CCNNNNNNNGG	2 cut(s)	142, 518
BsmFI	GGGAC	1 cut(s)	468
BsnI	GGCC	1 cut(s)	172
Bsp119I	TTCGAA	1 cut(s)	298
Bsp143I	GATC	4 cut(s)	132, 382, 628, 709
BspACI	CCGC	1 cut(s)	310
BspANI	GGCC	1 cut(s)	172
BspDI	ATCGAT	1 cut(s)	385
BspLI	GGNNCC	1 cut(s)	510
BspPI	GGATC	1 cut(s)	127
BspT104I	TTCGAA	1 cut(s)	298
BsrBI	CCGCTC	1 cut(s)	310
BsrI	ACTGG	3 cut(s)	18, 139, 480
BssECI	CCNNGG	2 cut(s)	350, 546
BssMI	GATC	4 cut(s)	132, 382, 628, 709
BssT1I	CCWWGG	2 cut(s)	350, 546
Bst4CI	ACNGT	2 cut(s)	490, 518
Bst6I	CTCTTC	2 cut(s)	249, 356
BstBI	TTCGAA	1 cut(s)	298
BstDEI	CTNAG	1 cut(s)	211
BstF5I	GGATG	1 cut(s)	592
BstKTI	GATC	4 cut(s)	135, 385, 631, 712
BstMBI	GATC	4 cut(s)	132, 382, 628, 709
BstX2I	RGATCY	1 cut(s)	132
BstYI	RGATCY	1 cut(s)	132
Bsu15I	ATCGAT	1 cut(s)	385
BsuRI	GGCC	1 cut(s)	172
BsuTUI	ATCGAT	1 cut(s)	385
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	6 cut(s)	11, 75, 126, 146, 495, 523
ClaI	ATCGAT	1 cut(s)	385
Csp6I	GTAC	2 cut(s)	259, 313
CviAII	CATG	5 cut(s)	66, 236, 567, 598, 679
CviQI	GTAC	2 cut(s)	259, 313
DdeI	CTNAG	1 cut(s)	211
DpnI	GATC	4 cut(s)	134, 384, 630, 711
DpnII	GATC	4 cut(s)	132, 382, 628, 709
DrdI	GACNNNNNNGTC	1 cut(s)	674
DseDI	GACNNNNNNGTC	1 cut(s)	674
Eam1104I	CTCTTC	2 cut(s)	249, 356
EarI	CTCTTC	2 cut(s)	249, 356
Eco130I	CCWWGG	2 cut(s)	350, 546
EcoRI	GAATTC	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	350, 546
ErhI	CCWWGG	2 cut(s)	350, 546
FaeI	CATG	5 cut(s)	69, 239, 570, 601, 682
FalI	AAGNNNNNCTT	2 cut(s)	35, 67
FaqI	GGGAC	1 cut(s)	468
FatI	CATG	5 cut(s)	65, 235, 566, 597, 678
FbaI	TGATCA	2 cut(s)	628, 709
FokI	GGATG	1 cut(s)	599
FspBI	CTAG	2 cut(s)	405, 431
HaeIII	GGCC	1 cut(s)	172
Hin1II	CATG	5 cut(s)	69, 239, 570, 601, 682
HincII	GTYRAC	1 cut(s)	222
HindII	GTYRAC	1 cut(s)	222
HindIII	AAGCTT	1 cut(s)	417
HinfI	GANTC	2 cut(s)	80, 443
HpaI	GTTAAC	1 cut(s)	222
HphI	GGTGA	1 cut(s)	536
Hpy166II	GTNNAC	2 cut(s)	222, 261
Hpy188I	TCNGA	1 cut(s)	448
Hpy188III	TCNNGA	6 cut(s)	342, 423, 584, 632, 665, 713
Hpy8I	GTNNAC	2 cut(s)	222, 261
HpyAV	CCTTC	4 cut(s)	157, 588, 621, 669
HpyCH4III	ACNGT	2 cut(s)	490, 518
HpyCH4V	TGCA	2 cut(s)	232, 439
HpyF3I	CTNAG	1 cut(s)	211
Hsp92II	CATG	5 cut(s)	69, 239, 570, 601, 682
Ksp22I	TGATCA	2 cut(s)	628, 709
KspAI	GTTAAC	1 cut(s)	222
Kzo9I	GATC	4 cut(s)	132, 382, 628, 709
LweI	GCATC	1 cut(s)	241
MaeI	CTAG	2 cut(s)	405, 431
MalI	GATC	4 cut(s)	134, 384, 630, 711
MbiI	CCGCTC	1 cut(s)	310
MboI	GATC	4 cut(s)	132, 382, 628, 709
MboII	GAAGA	4 cut(s)	79, 266, 373, 409
MflI	RGATCY	1 cut(s)	132
MluCI	AATT	5 cut(s)	5, 150, 345, 378, 532
MlyI	GAGTC	1 cut(s)	437
MnlI	CCTC	7 cut(s)	73, 162, 271, 357, 385, 618, 702
MseI	TTAA	3 cut(s)	149, 177, 221
MslI	CAYNNNNRTG	1 cut(s)	64
NdeII	GATC	4 cut(s)	132, 382, 628, 709
NlaIII	CATG	5 cut(s)	69, 239, 570, 601, 682
NlaIV	GGNNCC	1 cut(s)	510
NspV	TTCGAA	1 cut(s)	298
PfeI	GAWTC	1 cut(s)	80
PleI	GAGTC	1 cut(s)	437
PpsI	GAGTC	1 cut(s)	437
PshBI	ATTAAT	1 cut(s)	149
PspN4I	GGNNCC	1 cut(s)	510
PsuI	RGATCY	1 cut(s)	132
RsaI	GTAC	2 cut(s)	260, 314
RsaNI	GTAC	2 cut(s)	259, 313
RseI	CAYNNNNRTG	1 cut(s)	64
SaqAI	TTAA	3 cut(s)	149, 177, 221
Sau3AI	GATC	4 cut(s)	132, 382, 628, 709
SchI	GAGTC	1 cut(s)	437
SetI	ASST	3 cut(s)	328, 421, 514
SfaNI	GCATC	1 cut(s)	241
SfuI	TTCGAA	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	64
SmlI	CTYRAG	2 cut(s)	650, 731
SmoI	CTYRAG	2 cut(s)	650, 731
SpeI	ACTAGT	1 cut(s)	430
Sse9I	AATT	5 cut(s)	5, 150, 345, 378, 532
SsiI	CCGC	1 cut(s)	310
SspMI	CTAG	2 cut(s)	405, 431
StyI	CCWWGG	2 cut(s)	350, 546
TaaI	ACNGT	2 cut(s)	490, 518
TaqI	TCGA	2 cut(s)	298, 385
TasI	AATT	5 cut(s)	5, 150, 345, 378, 532
TatI	WGTACW	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	80
Tru1I	TTAA	3 cut(s)	149, 177, 221
Tru9I	TTAA	3 cut(s)	149, 177, 221
TscAI	CASTG	6 cut(s)	18, 82, 126, 146, 495, 523
TspDTI	ATGAA	2 cut(s)	176, 318
TspGWI	ACGGA	1 cut(s)	635
TspRI	CASTG	6 cut(s)	18, 82, 126, 146, 495, 523
VspI	ATTAAT	1 cut(s)	149
XapI	RAATTY	1 cut(s)	345
XspI	CTAG	2 cut(s)	405, 431

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.